[ImageJ-builds] Build failed in Jenkins: jitk-tps #24

jenkins at imagej.net jenkins at imagej.net
Wed Feb 10 13:02:47 CST 2016


See <http://jenkins.imagej.net/job/jitk-tps/24/changes>

Changes:

[bogovicj] Remove methods to add or remove landmarks

[bogovicj] Update unit tests, with reformatting

[bogovicj] TPS object is now final, solve called in constructor.

[bogovicj] Make sure empty TPS object acts as identity

[bogovicj] bump this implementation to 2.0.0-SNAPSHOT

[bogovicj] Remove deepCopy methods

[bogovicj] Don't depend on com.sun.tools class

[bogovicj] Remove useless constructor

[bogovicj] Enable computeAffine option for float inputs

[bogovicj] Remove unused method

------------------------------------------
Started by an SCM change
Building remotely on maven in workspace <http://jenkins.imagej.net/job/jitk-tps/ws/>
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url git://github.com/saalfeldlab/jitk-tps # timeout=10
Fetching upstream changes from git://github.com/saalfeldlab/jitk-tps
 > git --version # timeout=10
 > git -c core.askpass=true fetch --tags --progress git://github.com/saalfeldlab/jitk-tps +refs/heads/*:refs/remotes/origin/*
 > git rev-parse origin/master^{commit} # timeout=10
Checking out Revision 05d5c703095efa41e16c179cef63817ab825874c (origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 05d5c703095efa41e16c179cef63817ab825874c
 > git rev-list 60c7a12872fa9b736ea5afa394ac5d9d4e747bd8 # timeout=10
 > git tag -a -f -m Jenkins Build #24 jenkins-jitk-tps-24 # timeout=10
[jitk-tps] $ /bin/sh -xe /tmp/hudson7985796140785317214.sh
+ git clean -dfx
Removing target/
[jitk-tps] $ /bin/sh -xe /tmp/hudson4446123448480469143.sh
+ mvn -U -Pdeploy-to-imagej clean deploy
[INFO] Scanning for projects...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building JavaITK thin plate spline 2.0.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ jitk-tps ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-rules) @ jitk-tps ---
Downloading: http://maven.imagej.net/content/groups/public/com/sun/tools/1.4.2/tools-1.4.2.pom

Downloading: http://repo.maven.apache.org/maven2/com/sun/tools/1.4.2/tools-1.4.2.pom

[INFO] Adding ignorable dependency: null:jcodings:null
[INFO]   Adding ignore: org/jcodings/*
[INFO] Adding ignorable dependency: null:jnr-constants:null
[INFO]   Adding ignore: com/kenai/constantine/*
[INFO]   Adding ignore: jnr/constants/*
[INFO] Adding ignorable dependency: null:jnr-ffi:null
[INFO]   Adding ignore: jnr/ffi/*
[INFO] Adding ignorable dependency: null:joda-time:null
[INFO]   Adding ignore: *
[INFO] Adding ignorable dependency: null:slf4j-log4j12:null
[INFO]   Adding ignore: org/slf4j/impl/*
[INFO] Adding ignorable dependency: batik:batik:null
[INFO]   Adding ignore: *
[INFO] Adding ignorable dependency: jama:jama:null
[INFO]   Adding ignore: Jama/*
[INFO] Adding ignorable dependency: com.sun:tools:null
[INFO]   Adding ignore: *
[INFO] 
[INFO] --- build-helper-maven-plugin:1.9.1:regex-property (sanitize-version) @ jitk-tps ---
[INFO] 
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ jitk-tps ---
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins-maven/workspace/jitk-tps && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins-maven/workspace/jitk-tps
[INFO] Storing buildNumber: 05d5c703095efa41e16c179cef63817ab825874c at timestamp: 1455130965477
[WARNING] Cannot get the branch information from the git repository: 
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref

[INFO] Executing: /bin/sh -c cd /data/devel/jenkins-maven/workspace/jitk-tps && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins-maven/workspace/jitk-tps
[INFO] Storing buildScmBranch: UNKNOWN
[INFO] 
[INFO] --- scijava-maven-plugin:0.5.1:set-rootdir (set-rootdir) @ jitk-tps ---
[INFO] Setting rootdir: /data/devel/jenkins-maven/workspace/jitk-tps
[INFO] 
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ jitk-tps ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins-maven/workspace/jitk-tps/src/main/resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ jitk-tps ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 3 source files to /data/devel/jenkins-maven/workspace/jitk-tps/target/classes
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] /data/devel/jenkins-maven/workspace/jitk-tps/src/main/java/jitk/spline/ThinPlateR2LogRSplineKernelTransform.java:[55,25] cannot find symbol
symbol  : class ThinPlateR2LogRSplineKernelTransformFinal
location: class jitk.spline.ThinPlateR2LogRSplineKernelTransform
[INFO] 1 error
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 6.498s
[INFO] Finished at: Wed Feb 10 13:02:46 CST 2016
[INFO] Final Memory: 18M/360M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.1:compile (default-compile) on project jitk-tps: Compilation failure
[ERROR] /data/devel/jenkins-maven/workspace/jitk-tps/src/main/java/jitk/spline/ThinPlateR2LogRSplineKernelTransform.java:[55,25] cannot find symbol
[ERROR] symbol  : class ThinPlateR2LogRSplineKernelTransformFinal
[ERROR] location: class jitk.spline.ThinPlateR2LogRSplineKernelTransform
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Build step 'Execute shell' marked build as failure
Archiving artifacts



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