[ImageJ-builds] Build failed in Jenkins: scripting-R #7

jenkins at imagej.net jenkins at imagej.net
Mon Sep 28 19:44:09 CDT 2015 

See <http://jenkins.imagej.net/job/scripting-R/7/>

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[...truncated 370 lines...]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins-maven/workspace/scripting-R/src/main/resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ scripting-r ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 4 source files to /data/devel/jenkins-maven/workspace/scripting-R/target/classes
[INFO] 
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ scripting-r ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins-maven/workspace/scripting-R/src/test/resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ scripting-r ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /data/devel/jenkins-maven/workspace/scripting-R/target/test-classes
[INFO] 
[INFO] --- maven-surefire-plugin:2.17:test (default-test) @ scripting-r ---
[INFO] Surefire report directory: /data/devel/jenkins-maven/workspace/scripting-R/target/surefire-reports
Downloading: http://repo.maven.apache.org/maven2/org/apache/maven/surefire/surefire-junit4/2.17/surefire-junit4-2.17.pom
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Downloaded: http://repo.maven.apache.org/maven2/org/apache/maven/surefire/surefire-providers/2.17/surefire-providers-2.17.pom (3 KB at 55.3 KB/sec)
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Downloaded: http://repo.maven.apache.org/maven2/org/apache/maven/surefire/surefire-junit4/2.17/surefire-junit4-2.17.jar (63 KB at 897.3 KB/sec)

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 T E S T S
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Running org.scijava.plugins.scripting.r.RTest
org.rosuda.REngine.Rserve.RserveException: Cannot connect: Connection refused
	at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:90)
	at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:60)
	at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:44)
	at org.scijava.plugins.scripting.r.RScriptEngine.<init>(RScriptEngine.java:65)
	at org.scijava.plugins.scripting.r.RScriptLanguage.getScriptEngine(RScriptLanguage.java:57)
	at org.scijava.script.ScriptModule.getEngine(ScriptModule.java:126)
	at org.scijava.script.ScriptModule.run(ScriptModule.java:147)
	at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
	at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:164)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
	at java.lang.Thread.run(Thread.java:662)
Caused by: java.net.ConnectException: Connection refused
	at java.net.PlainSocketImpl.socketConnect(Native Method)
	at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:351)
	at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:213)
	at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:200)
	at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
	at java.net.Socket.connect(Socket.java:529)
	at java.net.Socket.connect(Socket.java:478)
	at java.net.Socket.<init>(Socket.java:375)
	at java.net.Socket.<init>(Socket.java:189)
	at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:85)
	... 15 more
[ERROR] Module threw exception
java.lang.NullPointerException
	at org.scijava.script.AbstractScriptEngine.put(AbstractScriptEngine.java:97)
	at org.scijava.script.ScriptModule.run(ScriptModule.java:151)
	at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
	at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:164)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
	at java.lang.Thread.run(Thread.java:662)
org.rosuda.REngine.Rserve.RserveException: Cannot connect: Connection refused
	at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:90)
	at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:60)
	at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:44)
	at org.scijava.plugins.scripting.r.RScriptEngine.<init>(RScriptEngine.java:65)
	at org.scijava.plugins.scripting.r.RScriptLanguage.getScriptEngine(RScriptLanguage.java:57)
	at org.scijava.plugins.scripting.r.RTest.testLocals(RTest.java:82)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
	at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
	at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
	at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
	at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70)
	at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
	at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
	at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
	at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
	at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
	at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
	at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
	at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:264)
	at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
	at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:124)
	at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:200)
	at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:153)
	at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
Caused by: java.net.ConnectException: Connection refused
	at java.net.PlainSocketImpl.socketConnect(Native Method)
	at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:351)
	at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:213)
	at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:200)
	at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
	at java.net.Socket.connect(Socket.java:529)
	at java.net.Socket.connect(Socket.java:478)
	at java.net.Socket.<init>(Socket.java:375)
	at java.net.Socket.<init>(Socket.java:189)
	at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:85)
	... 28 more
org.rosuda.REngine.Rserve.RserveException: Cannot connect: Connection refused
	at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:90)
	at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:60)
	at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:44)
	at org.scijava.plugins.scripting.r.RScriptEngine.<init>(RScriptEngine.java:65)
	at org.scijava.plugins.scripting.r.RScriptLanguage.getScriptEngine(RScriptLanguage.java:57)
	at org.scijava.script.ScriptModule.getEngine(ScriptModule.java:126)
	at org.scijava.script.ScriptModule.run(ScriptModule.java:147)
	at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
	at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:164)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
	at java.lang.Thread.run(Thread.java:662)
Caused by: java.net.ConnectException: Connection refused
	at java.net.PlainSocketImpl.socketConnect(Native Method)
	at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:351)
	at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:213)
	at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:200)
	at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
	at java.net.Socket.connect(Socket.java:529)
	at java.net.Socket.connect(Socket.java:478)
	at java.net.Socket.<init>(Socket.java:375)
	at java.net.Socket.<init>(Socket.java:189)
	at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:85)
	... 15 more
[ERROR] Module threw exception
java.lang.NullPointerException
	at org.scijava.script.AbstractScriptEngine.put(AbstractScriptEngine.java:97)
	at org.scijava.script.ScriptModule.run(ScriptModule.java:151)
	at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
	at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:164)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
	at java.lang.Thread.run(Thread.java:662)
Tests run: 3, Failures: 0, Errors: 3, Skipped: 0, Time elapsed: 0.445 sec <<< FAILURE! - in org.scijava.plugins.scripting.r.RTest
testBasic(org.scijava.plugins.scripting.r.RTest)  Time elapsed: 0.322 sec  <<< ERROR!
java.util.concurrent.ExecutionException: java.lang.NullPointerException
	at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:222)
	at java.util.concurrent.FutureTask.get(FutureTask.java:83)
	at org.scijava.plugins.scripting.r.RTest.testBasic(RTest.java:59)
Caused by: java.lang.NullPointerException: null
	at org.scijava.script.AbstractScriptEngine.put(AbstractScriptEngine.java:97)
	at org.scijava.script.ScriptModule.run(ScriptModule.java:151)
	at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
	at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:164)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
	at java.lang.Thread.run(Thread.java:662)

testLocals(org.scijava.plugins.scripting.r.RTest)  Time elapsed: 0.042 sec  <<< ERROR!
java.lang.NullPointerException: null
	at org.scijava.script.AbstractScriptEngine.put(AbstractScriptEngine.java:97)
	at org.scijava.plugins.scripting.r.RTest.testLocals(RTest.java:84)

testString(org.scijava.plugins.scripting.r.RTest)  Time elapsed: 0.055 sec  <<< ERROR!
java.util.concurrent.ExecutionException: java.lang.NullPointerException
	at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:222)
	at java.util.concurrent.FutureTask.get(FutureTask.java:83)
	at org.scijava.plugins.scripting.r.RTest.testString(RTest.java:71)
Caused by: java.lang.NullPointerException: null
	at org.scijava.script.AbstractScriptEngine.put(AbstractScriptEngine.java:97)
	at org.scijava.script.ScriptModule.run(ScriptModule.java:151)
	at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
	at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
	at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:164)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
	at java.lang.Thread.run(Thread.java:662)


Results :

Tests in error: 
  RTest.testBasic:59 » Execution java.lang.NullPointerException
  RTest.testLocals:84 » NullPointer
  RTest.testString:71 » Execution java.lang.NullPointerException

Tests run: 3, Failures: 0, Errors: 3, Skipped: 0

[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 6.000s
[INFO] Finished at: Mon Sep 28 19:44:08 CDT 2015
[INFO] Final Memory: 12M/360M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.17:test (default-test) on project scripting-r: There are test failures.
[ERROR] 
[ERROR] Please refer to /data/devel/jenkins-maven/workspace/scripting-R/target/surefire-reports for the individual test results.
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Build step 'Invoke top-level Maven targets' marked build as failure
Archiving artifacts
Recording test results

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