[ImageJ-builds] Build failed in Jenkins: Fiji-daily #1633

jenkins at imagej.net jenkins at imagej.net
Sat Oct 3 00:28:16 CDT 2015 

See <http://jenkins.imagej.net/job/Fiji-daily/1633/>

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[...truncated 45676 lines...]
Skipping artifact sc.fiji:wavelets:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact io.scif:scifio-bf-compat:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact io.scif:scifio-hdf5:0.1.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact io.scif:scifio-lifesci:0.7.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact io.scif:scifio-ome-xml:0.13.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact ome:bio-formats_plugins:5.1.3 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Parsing /data/devel/jenkins/.m2/repository/ca/mcgill/Sholl_Analysis/3.4.5/Sholl_Analysis-3.4.5.pom
Skipping artifact joda-time:joda-time:2.3 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact net.imagej:imagej:2.0.0-rc-38 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping invalid dependency (version unset): sc.fiji/Descriptor_based_registration-null{scope=runtime}
Skipping invalid dependency (version unset): sc.fiji/SPIM_Registration-null{scope=runtime}
Skipping invalid dependency (version unset): sc.fiji/bigdataviewer-core-null{scope=runtime}
Skipping invalid dependency (version unset): sc.fiji/bigdataviewer_fiji-null{scope=runtime}
Skipping invalid dependency (version unset): sc.fiji/spim_data-null{scope=runtime}
Skipping invalid dependency (version unset): sc.fiji/mpicbg-trakem2-null{scope=runtime}
Skipping invalid dependency (version unset): sc.fiji/T2-NIT-null{scope=runtime}
Skipping invalid dependency (version unset): sc.fiji/T2-TreelineGraph-null{scope=runtime}
Skipping invalid dependency (version unset): sc.fiji/TrakEM2_-null{scope=runtime}
Skipping invalid dependency (version unset): sc.fiji/VectorString-null{scope=runtime}
Skipping artifact jitk:jitk-tps:1.2.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:trakem2_tps:1.1.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:FS_Align_TrakEM2:2.0.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
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Skipping artifact sc.fiji:register_virtual_stack_slices:
					2.0.5
				 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
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Skipping artifact sc.fiji:3D_Objects_Counter:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
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Skipping artifact sc.fiji:AnalyzeSkeleton_:2.0.4 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
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Skipping artifact sc.fiji:Arrow_:2.0.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Auto_Threshold:1.16.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
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Skipping artifact sc.fiji:Color_Inspector_3D:2.3.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Colour_Deconvolution:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:CorrectBleach_:2.0.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Dichromacy_:2.1.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
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Skipping artifact sc.fiji:Extended_Depth_Field:2.0.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
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Skipping artifact sc.fiji:Fiji_Plugins:3.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Fiji_Updater:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
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Skipping artifact sc.fiji:Gray_Morphology:2.3.3 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Helmholtz_Analysis:2.0.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:IJ_Robot:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:IO_:2.3.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Image_Expression_Parser:3.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Interactive_3D_Surface_Plot:2.31.2 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:IsoData_Classifier:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Kuwahara_Filter:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:LSM_Reader:4.1.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:LSM_Toolbox:4.1.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Lasso_and_Blow_Tool:2.0.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Linear_Kuwahara:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:LocalThickness_:3.1.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:MTrackJ_:1.5.4 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:M_I_P:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Manual_Tracking:2.1.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Multi_Kymograph:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:PIV_analyser:1.1.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:PointPicker_:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:QuickPALM_:1.1.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:RandomJ_:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:SPIM_Opener:2.0.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Series_Labeler:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:SheppLogan_:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
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Skipping artifact sc.fiji:Siox_Segmentation:1.0.4 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Stack_Manipulation:2.0.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Statistical_Region_Merging:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Stitching_:3.1.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Sync_Win:1.7-fiji3 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Thread_Killer:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Time_Lapse:2.0.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Time_Stamper:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:ToAST_:25.0.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:TrackMate_:2.7.4 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:TransformJ_:4.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:UnwarpJ_:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:VIB-lib:2.1.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:VIB_:2.0.3 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Vaa3d_Reader:2.0.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Vaa3d_Writer:1.0.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Video_Editing:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:View5D_:1.3.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Volume_Calculator:1.0.2 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:Volume_Viewer:2.01.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:bigwarp_fiji:1.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:bUnwarpJ_:2.6.3 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:fiji-compat:2.0.2 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact org.janelia:H5J_Loader_Plugin:1.0.2 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:imageware:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:javac:1.6.0.24-ubuntu-fiji2 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:legacy-imglib1:1.1.4-DEPRECATED (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:level_sets:1.0.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:mij:1.3.6-fiji2 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:pal-optimization:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:registration_3d:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact sc.fiji:wavelets:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact io.scif:scifio-bf-compat:2.0.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact io.scif:scifio-hdf5:0.1.1 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact io.scif:scifio-lifesci:0.7.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact io.scif:scifio-ome-xml:0.13.0 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact ome:bio-formats_plugins:5.1.3 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
Skipping artifact joda-time:joda-time:2.3 (for sc.fiji:fiji:2.0.0-SNAPSHOT): not found
+ update_launcher
+ uptodate /data/devel/jenkins/jobs/Fiji-daily/workspace/./Build.sh /data/devel/jenkins/jobs/Fiji-daily/workspace/ImageJ-linux64
+ test -s /data/devel/jenkins/jobs/Fiji-daily/workspace/ImageJ-linux64
+ cd /data/devel/jenkins/jobs/Fiji-daily/workspace
+ sh -ax bin/download-launchers.sh release linux64
+ set -e
+ unset CDPATH
+ dirname bin/download-launchers.sh
+ cd bin/..
+ mode=releases
+ platform=linux64
+ groupId=net/imagej
+ artifactId=imagej-launcher
+ baseurl=http://maven.imagej.net/service/local/repositories/sonatype/content/net/imagej/imagej-launcher
+ curl http://maven.imagej.net/service/local/repositories/sonatype/content/net/imagej/imagej-launcher/maven-metadata.xml
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   735  100   735    0     0   6139      0 --:--:-- --:--:-- --:--:--  6282
+ metadata=<?xml version="1.0" encoding="UTF-8"?>
<metadata>
  <groupId>net.imagej</groupId>
  <artifactId>imagej-launcher</artifactId>
  <versioning>
    <latest>4.0.0</latest>
    <release>4.0.0</release>
    <versions>
      <version>3.0.0</version>
      <version>3.0.1</version>
      <version>3.0.2</version>
      <version>3.1.0</version>
      <version>3.1.1</version>
      <version>3.1.2</version>
      <version>3.1.3</version>
      <version>3.1.4</version>
      <version>3.1.5</version>
      <version>3.1.6</version>
      <version>3.1.7</version>
      <version>3.2.0</version>
      <version>3.3.0</version>
      <version>4.0.0</version>
    </versions>
    <lastUpdated>20150715195447</lastUpdated>
  </versioning>
</metadata>
+ get version
+ echo <?xml version="1.0" encoding="UTF-8"?>
<metadata>
  <groupId>net.imagej</groupId>
  <artifactId>imagej-launcher</artifactId>
  <versioning>
    <latest>4.0.0</latest>
    <release>4.0.0</release>
    <versions>
      <version>3.0.0</version>
      <version>3.0.1</version>
      <version>3.0.2</version>
      <version>3.1.0</version>
      <version>3.1.1</version>
      <version>3.1.2</version>
      <version>3.1.3</version>
      <version>3.1.4</version>
      <version>3.1.5</version>
      <version>3.1.6</version>
      <version>3.1.7</version>
      <version>3.2.0</version>
      <version>3.3.0</version>
      <version>4.0.0</version>
    </versions>
    <lastUpdated>20150715195447</lastUpdated>
  </versioning>
</metadata>+ 
sed -n s/.*<version>\(.*\)<\/version>.*/\1/p
+ tail -n 1
+ version=4.0.0
+ baseurl=http://maven.imagej.net/service/local/repositories/sonatype/content/net/imagej/imagej-launcher/4.0.0
+ basename=imagej-launcher-4.0.0
+ tmpdir=.tmp.8798
+ mkdir .tmp.8798
+ curl http://maven.imagej.net/service/local/repositories/sonatype/content/net/imagej/imagej-launcher/4.0.0/imagej-launcher-4.0.0.nar
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 68 22870   68 15506    0     0   225k      0 --:--:-- --:--:-- --:--:--  232k
100 22870  100 22870    0     0   332k      0 --:--:-- --:--:-- --:--:--  343k
+ test -z linux64
+ download_platform linux64
+ download amd64-Linux ImageJ-linux64
+ exe=
+ curl http://maven.imagej.net/service/local/repositories/sonatype/content/net/imagej/imagej-launcher/4.0.0/imagej-launcher-4.0.0-amd64-Linux-gcc-executable.nar
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 34113  100 34113    0     0  1334k      0 --:--:-- --:--:-- --:--:-- 1514k
+ unzip -p .tmp.8798/amd64-Linux.zip bin/amd64-Linux-gcc/imagej-launcher
+ chmod a+x ImageJ-linux64
+ + sed s/ImageJ-/fiji-/
echo ImageJ-linux64
+ fiji=fiji-linux64
+ cp ImageJ-linux64 fiji-linux64
+ test ! -z linux64
+ cp ImageJ-linux64 ImageJ
+ cp fiji-linux64 fiji
+ rm -rf .tmp.8798
+ test -z fiji-linux64
+ test ! -f /data/devel/jenkins/jobs/Fiji-daily/workspace/fiji-linux64
+ rm /data/devel/jenkins/jobs/Fiji-daily/workspace/fiji-linux64
+ uptodate ImageJ-linux64 fiji
+ test -s fiji
+ test fiji -nt ImageJ-linux64
+ cp ImageJ-linux64 fiji
+ uptodate ImageJ-linux64 ImageJ
+ test -s ImageJ
+ test ImageJ -nt ImageJ-linux64
+ cp ImageJ-linux64 ImageJ
+ java -Dij.dir=. -classpath plugins/*:jars/* fiji.packaging.Packager fiji-nojre.tar
Exception in thread "main" java.lang.NoClassDefFoundError: fiji/packaging/Packager
Caused by: java.lang.ClassNotFoundException: fiji.packaging.Packager
	at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
	at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
Could not find the main class: fiji.packaging.Packager.  Program will exit.
Build step 'Execute shell' marked build as failure

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