[ImageJ-builds] Build failed in Jenkins: scripting-R #9
jenkins at imagej.net
jenkins at imagej.net
Thu Nov 19 12:36:06 CST 2015
See <http://jenkins.imagej.net/job/scripting-R/9/changes>
Changes:
[Curtis Rueden] POM: remove excess whitespace
[Curtis Rueden] POM: remove redundant mailingLists section
[Curtis Rueden] POM: update developers and contributors
[Curtis Rueden] POM: bump parent to pom-scijava 9.0.0
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[...truncated 66 lines...]
[INFO] Adding ignore: javax/media/j3d/
[INFO] Adding ignorable dependency: null:j3d-core:null
[INFO] Adding ignore: javax/media/j3d/
[INFO] Adding ignorable dependency: null:joda-time:null
[INFO] Adding ignore: *
[INFO] Adding ignorable dependency: null:slf4j-log4j12:null
[INFO] Adding ignore: org/slf4j/impl/*
[INFO] Adding ignorable dependency: batik:batik:null
[INFO] Adding ignore: *
[INFO] Adding ignorable dependency: jama:jama:null
[INFO] Adding ignore: Jama/*
[INFO] Adding ignorable dependency: com.sun:tools:null
[INFO] Adding ignore: *
[INFO]
[INFO] --- build-helper-maven-plugin:1.9.1:regex-property (sanitize-version) @ scripting-r ---
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ scripting-r ---
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins-maven/workspace/scripting-R && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins-maven/workspace/scripting-R
[INFO] Storing buildNumber: aede81812222f1861d745d727609e1837bbb69c0 at timestamp: 1447958163996
[WARNING] Cannot get the branch information from the git repository:
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins-maven/workspace/scripting-R && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins-maven/workspace/scripting-R
[INFO] Storing buildScmBranch: UNKNOWN
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ scripting-r ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins-maven/workspace/scripting-R/src/main/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ scripting-r ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 4 source files to /data/devel/jenkins-maven/workspace/scripting-R/target/classes
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ scripting-r ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins-maven/workspace/scripting-R/src/test/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ scripting-r ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /data/devel/jenkins-maven/workspace/scripting-R/target/test-classes
[INFO]
[INFO] --- maven-surefire-plugin:2.17:test (default-test) @ scripting-r ---
[INFO] Surefire report directory: /data/devel/jenkins-maven/workspace/scripting-R/target/surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running org.scijava.plugins.scripting.r.RTest
[ECLIPSE HELPER] Indexing annotations...
org.rosuda.REngine.Rserve.RserveException: Cannot connect: Connection refused
at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:90)
at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:60)
at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:44)
at org.scijava.plugins.scripting.r.RScriptEngine.<init>(RScriptEngine.java:65)
at org.scijava.plugins.scripting.r.RScriptLanguage.getScriptEngine(RScriptLanguage.java:57)
at org.scijava.script.ScriptModule.getEngine(ScriptModule.java:126)
at org.scijava.script.ScriptModule.run(ScriptModule.java:147)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:191)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
at java.lang.Thread.run(Thread.java:662)
Caused by: java.net.ConnectException: Connection refused
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:351)
at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:213)
at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:200)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
at java.net.Socket.connect(Socket.java:529)
at java.net.Socket.connect(Socket.java:478)
at java.net.Socket.<init>(Socket.java:375)
at java.net.Socket.<init>(Socket.java:189)
at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:85)
... 15 more
[ERROR] Module threw exception
java.lang.NullPointerException
at org.scijava.script.AbstractScriptEngine.put(AbstractScriptEngine.java:97)
at org.scijava.script.ScriptModule.run(ScriptModule.java:151)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:191)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
at java.lang.Thread.run(Thread.java:662)
org.rosuda.REngine.Rserve.RserveException: Cannot connect: Connection refused
at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:90)
at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:60)
at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:44)
at org.scijava.plugins.scripting.r.RScriptEngine.<init>(RScriptEngine.java:65)
at org.scijava.plugins.scripting.r.RScriptLanguage.getScriptEngine(RScriptLanguage.java:57)
at org.scijava.plugins.scripting.r.RTest.testLocals(RTest.java:82)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:264)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:124)
at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:200)
at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:153)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
Caused by: java.net.ConnectException: Connection refused
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:351)
at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:213)
at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:200)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
at java.net.Socket.connect(Socket.java:529)
at java.net.Socket.connect(Socket.java:478)
at java.net.Socket.<init>(Socket.java:375)
at java.net.Socket.<init>(Socket.java:189)
at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:85)
... 28 more
org.rosuda.REngine.Rserve.RserveException: Cannot connect: Connection refused
at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:90)
at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:60)
at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:44)
at org.scijava.plugins.scripting.r.RScriptEngine.<init>(RScriptEngine.java:65)
at org.scijava.plugins.scripting.r.RScriptLanguage.getScriptEngine(RScriptLanguage.java:57)
at org.scijava.script.ScriptModule.getEngine(ScriptModule.java:126)
at org.scijava.script.ScriptModule.run(ScriptModule.java:147)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:191)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
at java.lang.Thread.run(Thread.java:662)
Caused by: java.net.ConnectException: Connection refused
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:351)
at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:213)
at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:200)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
at java.net.Socket.connect(Socket.java:529)
at java.net.Socket.connect(Socket.java:478)
at java.net.Socket.<init>(Socket.java:375)
at java.net.Socket.<init>(Socket.java:189)
at org.rosuda.REngine.Rserve.RConnection.<init>(RConnection.java:85)
... 15 more
[ERROR] Module threw exception
java.lang.NullPointerException
at org.scijava.script.AbstractScriptEngine.put(AbstractScriptEngine.java:97)
at org.scijava.script.ScriptModule.run(ScriptModule.java:151)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:191)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
at java.lang.Thread.run(Thread.java:662)
Tests run: 3, Failures: 0, Errors: 3, Skipped: 0, Time elapsed: 0.373 sec <<< FAILURE! - in org.scijava.plugins.scripting.r.RTest
testBasic(org.scijava.plugins.scripting.r.RTest) Time elapsed: 0.286 sec <<< ERROR!
java.util.concurrent.ExecutionException: java.lang.NullPointerException
at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:222)
at java.util.concurrent.FutureTask.get(FutureTask.java:83)
at org.scijava.plugins.scripting.r.RTest.testBasic(RTest.java:59)
Caused by: java.lang.NullPointerException: null
at org.scijava.script.AbstractScriptEngine.put(AbstractScriptEngine.java:97)
at org.scijava.script.ScriptModule.run(ScriptModule.java:151)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:191)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
at java.lang.Thread.run(Thread.java:662)
testLocals(org.scijava.plugins.scripting.r.RTest) Time elapsed: 0.029 sec <<< ERROR!
java.lang.NullPointerException: null
at org.scijava.script.AbstractScriptEngine.put(AbstractScriptEngine.java:97)
at org.scijava.plugins.scripting.r.RTest.testLocals(RTest.java:84)
testString(org.scijava.plugins.scripting.r.RTest) Time elapsed: 0.033 sec <<< ERROR!
java.util.concurrent.ExecutionException: java.lang.NullPointerException
at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:222)
at java.util.concurrent.FutureTask.get(FutureTask.java:83)
at org.scijava.plugins.scripting.r.RTest.testString(RTest.java:71)
Caused by: java.lang.NullPointerException: null
at org.scijava.script.AbstractScriptEngine.put(AbstractScriptEngine.java:97)
at org.scijava.script.ScriptModule.run(ScriptModule.java:151)
at org.scijava.module.ModuleRunner.run(ModuleRunner.java:167)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:126)
at org.scijava.module.ModuleRunner.call(ModuleRunner.java:65)
at org.scijava.thread.DefaultThreadService$2.call(DefaultThreadService.java:191)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
at java.lang.Thread.run(Thread.java:662)
Results :
Tests in error:
RTest.testBasic:59 » Execution java.lang.NullPointerException
RTest.testLocals:84 » NullPointer
RTest.testString:71 » Execution java.lang.NullPointerException
Tests run: 3, Failures: 0, Errors: 3, Skipped: 0
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 5.003s
[INFO] Finished at: Thu Nov 19 12:36:05 CST 2015
[INFO] Final Memory: 14M/360M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.17:test (default-test) on project scripting-r: There are test failures.
[ERROR]
[ERROR] Please refer to /data/devel/jenkins-maven/workspace/scripting-R/target/surefire-reports for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Build step 'Invoke top-level Maven targets' marked build as failure
Archiving artifacts
Recording test results
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