[ImageJ-builds] Build failed in Jenkins: SPIM_Registration #249
jenkins at imagej.net
jenkins at imagej.net
Mon Jul 20 06:44:12 CDT 2015
See <http://jenkins.imagej.net/job/SPIM_Registration/249/changes>
Changes:
[Stephan Preibisch] AbstractImgLoader does not by default have an ImgFactory, fixed MicroManager ImgLoader that only supports ArrayImg at the moment
[Stephan Preibisch] fixed ResavePopup
[Stephan Preibisch] fixed MicroManagerImgLoader, dropped frames are at the right position
------------------------------------------
Started by an SCM change
Building on master in workspace <http://jenkins.imagej.net/job/SPIM_Registration/ws/>
> git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/bigdataviewer/SPIM_Registration # timeout=10
Fetching upstream changes from https://github.com/bigdataviewer/SPIM_Registration
> git --version # timeout=10
> git -c core.askpass=true fetch --tags --progress https://github.com/bigdataviewer/SPIM_Registration +refs/heads/*:refs/remotes/origin/*
> git rev-parse origin/master^{commit} # timeout=10
Checking out Revision 93bf055718a293214a88051eb1c2a5d73a1f4401 (origin/master)
> git config core.sparsecheckout # timeout=10
> git checkout -f 93bf055718a293214a88051eb1c2a5d73a1f4401
> git rev-list 1dc321c2f66636eb0d7b04fe7173edfbcbfd401e # timeout=10
> git tag -a -f -m Jenkins Build #249 jenkins-SPIM_Registration-249 # timeout=10
[workspace] $ /bin/sh -xe /tmp/hudson1562067533497215044.sh
+ git clean -dfx
Removing target/
[workspace] $ /bin/sh -xe /tmp/hudson5611796986617825638.sh
+ mvn -U -Pdeploy-to-imagej deploy
[INFO] Scanning for projects...
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building SPIM Registration 2.4.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-rules) @ SPIM_Registration ---
Downloading: http://maven.imagej.net/content/groups/public/com/sun/tools/1.4.2/tools-1.4.2.pom
Downloading: http://repo.maven.apache.org/maven2/com/sun/tools/1.4.2/tools-1.4.2.pom
[INFO] Adding ignorable dependency: null:jcodings:null
[INFO] Adding ignore: org/jcodings/*
[INFO] Adding ignorable dependency: null:jnr-constants:null
[INFO] Adding ignore: com/kenai/constantine/*
[INFO] Adding ignore: jnr/constants/*
[INFO] Adding ignorable dependency: null:jnr-ffi:null
[INFO] Adding ignore: jnr/ffi/*
[INFO] Adding ignorable dependency: null:VIB-lib:null
[INFO] Adding ignore: javax/media/j3d/
[INFO] Adding ignorable dependency: null:j3d-core:null
[INFO] Adding ignore: javax/media/j3d/
[INFO] Adding ignorable dependency: null:joda-time:null
[INFO] Adding ignore: *
[INFO] Adding ignorable dependency: null:slf4j-log4j12:null
[INFO] Adding ignore: org/slf4j/impl/*
[INFO] Adding ignorable dependency: batik:batik:null
[INFO] Adding ignore: *
[INFO] Adding ignorable dependency: jama:jama:null
[INFO] Adding ignore: Jama/*
[INFO] Adding ignorable dependency: com.sun:tools:null
[INFO] Adding ignore: *
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ SPIM_Registration ---
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/SPIM_Registration/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/SPIM_Registration/workspace
[INFO] Storing buildNumber: 93bf055718a293214a88051eb1c2a5d73a1f4401 at timestamp: 1437392643763
[WARNING] Cannot get the branch information from the git repository:
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/SPIM_Registration/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/SPIM_Registration/workspace
[INFO] Storing buildScmBranch: UNKNOWN
[INFO]
[INFO] --- scijava-maven-plugin:0.5.0:set-rootdir (set-rootdir) @ SPIM_Registration ---
[INFO] Setting rootdir: /data/devel/jenkins/jobs/SPIM_Registration/workspace
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ SPIM_Registration ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 3 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ SPIM_Registration ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 356 source files to /data/devel/jenkins/jobs/SPIM_Registration/workspace/target/classes
[INFO] -------------------------------------------------------------
[WARNING] COMPILATION WARNING :
[INFO] -------------------------------------------------------------
[WARNING] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/mpicbg/spim/segmentation/IntegralImage3d.java: Some input files use or override a deprecated API.
[WARNING] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/mpicbg/spim/segmentation/IntegralImage3d.java: Recompile with -Xlint:deprecation for details.
[WARNING] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/mpicbg/spim/registration/bead/BeadRegistration.java: Some input files use unchecked or unsafe operations.
[WARNING] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/mpicbg/spim/registration/bead/BeadRegistration.java: Recompile with -Xlint:unchecked for details.
[INFO] 4 warnings
[INFO] -------------------------------------------------------------
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR :
[INFO] -------------------------------------------------------------
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/fiji/plugin/Display_View.java:[135,37] cannot find symbol
symbol: method getImgFactory()
location: variable il of type spim.fiji.spimdata.imgloaders.AbstractImgLoader
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/fiji/plugin/Display_View.java:[136,27] cannot find symbol
symbol: method setImgFactory(net.imglib2.img.imageplus.ImagePlusImgFactory<net.imglib2.type.numeric.real.FloatType>)
location: variable il of type spim.fiji.spimdata.imgloaders.AbstractImgLoader
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/fiji/plugin/Display_View.java:[158,27] cannot find symbol
symbol: method setImgFactory(net.imglib2.img.ImgFactory<capture#1 of ? extends net.imglib2.type.NativeType<?>>)
location: variable il of type spim.fiji.spimdata.imgloaders.AbstractImgLoader
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/fiji/datasetmanager/MicroManager.java:[91,66] constructor MicroManagerImgLoader in class spim.fiji.spimdata.imgloaders.MicroManagerImgLoader cannot be applied to given types;
required: java.io.File,mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<? extends mpicbg.spim.data.generic.sequence.BasicViewSetup,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>,?>
found: java.io.File,net.imglib2.img.ImgFactory<capture#2 of ? extends net.imglib2.type.NativeType<?>>,mpicbg.spim.data.sequence.SequenceDescription
reason: actual and formal argument lists differ in length
[INFO] 4 errors
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 17.224s
[INFO] Finished at: Mon Jul 20 06:44:12 CDT 2015
[INFO] Final Memory: 32M/519M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.1:compile (default-compile) on project SPIM_Registration: Compilation failure: Compilation failure:
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/fiji/plugin/Display_View.java:[135,37] cannot find symbol
[ERROR] symbol: method getImgFactory()
[ERROR] location: variable il of type spim.fiji.spimdata.imgloaders.AbstractImgLoader
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/fiji/plugin/Display_View.java:[136,27] cannot find symbol
[ERROR] symbol: method setImgFactory(net.imglib2.img.imageplus.ImagePlusImgFactory<net.imglib2.type.numeric.real.FloatType>)
[ERROR] location: variable il of type spim.fiji.spimdata.imgloaders.AbstractImgLoader
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/fiji/plugin/Display_View.java:[158,27] cannot find symbol
[ERROR] symbol: method setImgFactory(net.imglib2.img.ImgFactory<capture#1 of ? extends net.imglib2.type.NativeType<?>>)
[ERROR] location: variable il of type spim.fiji.spimdata.imgloaders.AbstractImgLoader
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/fiji/datasetmanager/MicroManager.java:[91,66] constructor MicroManagerImgLoader in class spim.fiji.spimdata.imgloaders.MicroManagerImgLoader cannot be applied to given types;
[ERROR] required: java.io.File,mpicbg.spim.data.generic.sequence.AbstractSequenceDescription<? extends mpicbg.spim.data.generic.sequence.BasicViewSetup,? extends mpicbg.spim.data.generic.sequence.BasicViewDescription<?>,?>
[ERROR] found: java.io.File,net.imglib2.img.ImgFactory<capture#2 of ? extends net.imglib2.type.NativeType<?>>,mpicbg.spim.data.sequence.SequenceDescription
[ERROR] reason: actual and formal argument lists differ in length
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Build step 'Execute shell' marked build as failure
Archiving artifacts
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