[ImageJ-builds] Build failed in Jenkins: Colocalisation_Analysis #22
jenkins at imagej.net
jenkins at imagej.net
Tue Jan 27 02:37:40 CST 2015
See <http://jenkins.imagej.net/job/Colocalisation_Analysis/22/changes>
Changes:
[tom] Fix some image data type variable initializations
[tom] Add test for commutativity of the auto thresholding regression
[tom] Auto threshold regression: change comment slightly (minor)
[tom] Make auto threshold regression commutative wrt. channels
------------------------------------------
Started by an SCM change
Building on master in workspace <http://jenkins.imagej.net/job/Colocalisation_Analysis/ws/>
Fetching changes from the remote Git repository
Fetching upstream changes from https://github.com/fiji/Colocalisation_Analysis
Checking out Revision 98c617cd589783be42fe0ae94f1aa8f86c8b7544 (origin/master)
[workspace] $ /bin/sh -xe /tmp/hudson8419031924805826493.sh
+ git clean -dfx
Removing target/
[workspace] $ /bin/sh -xe /tmp/hudson6128340066325518341.sh
+ mvn -U -Pdeploy-to-imagej deploy
[INFO] Scanning for projects...
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building plugins/Colocalisation_Analysis.jar 2.0.2-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-rules) @ Colocalisation_Analysis ---
Downloading: http://maven.imagej.net/content/groups/public/com/sun/tools/1.4.2/tools-1.4.2.pom
Downloading: http://repo.maven.apache.org/maven2/com/sun/tools/1.4.2/tools-1.4.2.pom
[INFO] Adding ignorable dependency: null:jcodings:null
[INFO] Adding ignore: org/jcodings/*
[INFO] Adding ignorable dependency: null:jnr-constants:null
[INFO] Adding ignore: com/kenai/constantine/*
[INFO] Adding ignore: jnr/constants/*
[INFO] Adding ignorable dependency: null:jnr-ffi:null
[INFO] Adding ignore: jnr/ffi/*
[INFO] Adding ignorable dependency: null:VIB-lib:null
[INFO] Adding ignore: javax/media/j3d/
[INFO] Adding ignorable dependency: null:j3d-core:null
[INFO] Adding ignore: javax/media/j3d/
[INFO] Adding ignorable dependency: null:joda-time:null
[INFO] Adding ignore: *
[INFO] Adding ignorable dependency: null:slf4j-log4j12:null
[INFO] Adding ignore: org/slf4j/impl/*
[INFO] Adding ignorable dependency: batik:batik:null
[INFO] Adding ignore: *
[INFO] Adding ignorable dependency: jama:jama:null
[INFO] Adding ignore: Jama/*
[INFO] Adding ignorable dependency: com.sun:tools:null
[INFO] Adding ignore: *
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ Colocalisation_Analysis ---
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Colocalisation_Analysis/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Colocalisation_Analysis/workspace
[INFO] Storing buildNumber: 98c617cd589783be42fe0ae94f1aa8f86c8b7544 at timestamp: 1422347836512
[WARNING] Cannot get the branch information from the git repository:
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Colocalisation_Analysis/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Colocalisation_Analysis/workspace
[INFO] Storing buildScmBranch: UNKNOWN
[INFO]
[INFO] --- scijava-maven-plugin:0.4.3:set-rootdir (set-rootdir) @ Colocalisation_Analysis ---
[INFO] Setting rootdir: /data/devel/jenkins/jobs/Colocalisation_Analysis/workspace
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ Colocalisation_Analysis ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO]
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ Colocalisation_Analysis ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 37 source files to /data/devel/jenkins/jobs/Colocalisation_Analysis/workspace/target/classes
[WARNING] Note: Some input files use or override a deprecated API.
[WARNING] Note: Recompile with -Xlint:deprecation for details.
[WARNING] Note: /data/devel/jenkins/jobs/Colocalisation_Analysis/workspace/src/main/java/results/SingleWindowDisplay.java uses unchecked or unsafe operations.
[WARNING] Note: Recompile with -Xlint:unchecked for details.
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ Colocalisation_Analysis ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 19 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ Colocalisation_Analysis ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 14 source files to /data/devel/jenkins/jobs/Colocalisation_Analysis/workspace/target/test-classes
[WARNING] Note: /data/devel/jenkins/jobs/Colocalisation_Analysis/workspace/src/test/java/tests/TestImageAccessor.java uses or overrides a deprecated API.
[WARNING] Note: Recompile with -Xlint:deprecation for details.
[INFO]
[INFO] --- maven-surefire-plugin:2.17:test (default-test) @ Colocalisation_Analysis ---
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Colocalisation_Analysis/workspace/target/surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running tests.KendallTauTest
Tests run: 4, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.04 sec - in tests.KendallTauTest
Running tests.StatisticsTest
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec - in tests.StatisticsTest
Running tests.CommutativityTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.592 sec - in tests.CommutativityTest
Running tests.MaskAndRoiTest
Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.276 sec - in tests.MaskAndRoiTest
Running tests.AutoThresholdRegressionTest
Tests run: 2, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 0.161 sec <<< FAILURE! - in tests.AutoThresholdRegressionTest
cummutativityTest(tests.AutoThresholdRegressionTest) Time elapsed: 0.085 sec <<< FAILURE!
java.lang.AssertionError: expected:<8.0> but was:<4.0>
at org.junit.Assert.fail(Assert.java:88)
at org.junit.Assert.failNotEquals(Assert.java:743)
at org.junit.Assert.assertEquals(Assert.java:118)
at org.junit.Assert.assertEquals(Assert.java:144)
at tests.AutoThresholdRegressionTest.cummutativityTest(AutoThresholdRegressionTest.java:63)
Running tests.MandersColocalizationTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.168 sec - in tests.MandersColocalizationTest
Running tests.PearsonsCorrelationTest
Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.083 sec - in tests.PearsonsCorrelationTest
Running tests.SpearmanRankTest
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.633 sec - in tests.SpearmanRankTest
Running tests.CostesSignificanceTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 12.706 sec - in tests.CostesSignificanceTest
Running tests.LiICQTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.248 sec - in tests.LiICQTest
Results :
Failed tests:
AutoThresholdRegressionTest.cummutativityTest:63 expected:<8.0> but was:<4.0>
Tests run: 32, Failures: 1, Errors: 0, Skipped: 1
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 28.592s
[INFO] Finished at: Tue Jan 27 02:37:40 CST 2015
[INFO] Final Memory: 23M/567M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.17:test (default-test) on project Colocalisation_Analysis: There are test failures.
[ERROR]
[ERROR] Please refer to /data/devel/jenkins/jobs/Colocalisation_Analysis/workspace/target/surefire-reports for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Build step 'Execute shell' marked build as failure
Archiving artifacts
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