[ImageJ-builds] Build failed in Jenkins: FS_Align_TrakEM2 #14

Mon Dec 7 00:06:44 CST 2015

See <http://jenkins.imagej.net/job/FS_Align_TrakEM2/14/>

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Started by an SCM change
Building remotely on maven in workspace <http://jenkins.imagej.net/job/FS_Align_TrakEM2/ws/>
Cloning the remote Git repository
Cloning repository git://github.com/trakem2/FS_Align_TrakEM2
 > git init <http://jenkins.imagej.net/job/FS_Align_TrakEM2/ws/> # timeout=10
Fetching upstream changes from git://github.com/trakem2/FS_Align_TrakEM2
 > git --version # timeout=10
 > git -c core.askpass=true fetch --tags --progress git://github.com/trakem2/FS_Align_TrakEM2 +refs/heads/*:refs/remotes/origin/*
 > git config remote.origin.url git://github.com/trakem2/FS_Align_TrakEM2 # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url git://github.com/trakem2/FS_Align_TrakEM2 # timeout=10
Fetching upstream changes from git://github.com/trakem2/FS_Align_TrakEM2
 > git -c core.askpass=true fetch --tags --progress git://github.com/trakem2/FS_Align_TrakEM2 +refs/heads/*:refs/remotes/origin/*
 > git rev-parse origin/master^{commit} # timeout=10
Checking out Revision 18abdbfacb76acec23eb2cc7e390a7dcc6aea4b7 (origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 18abdbfacb76acec23eb2cc7e390a7dcc6aea4b7
First time build. Skipping changelog.
 > git tag -a -f -m Jenkins Build #14 jenkins-FS_Align_TrakEM2-14 # timeout=10
[FS_Align_TrakEM2] $ /bin/sh -xe /tmp/hudson5108125718840006201.sh
+ git clean -dfx
[FS_Align_TrakEM2] $ /bin/sh -xe /tmp/hudson6622371272678268194.sh
+ mvn -U -Pdeploy-to-imagej deploy
[INFO] Scanning for projects...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building plugins/FS_Align_TrakEM2.jar 2.0.1
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-rules) @ FS_Align_TrakEM2 ---
Downloading: http://maven.imagej.net/content/groups/public/com/sun/tools/1.4.2/tools-1.4.2.pom

Downloading: http://repo.maven.apache.org/maven2/com/sun/tools/1.4.2/tools-1.4.2.pom

[INFO] Adding ignorable dependency: null:jcodings:null
[INFO]   Adding ignore: org/jcodings/*
[INFO] Adding ignorable dependency: null:jnr-constants:null
[INFO]   Adding ignore: com/kenai/constantine/*
[INFO]   Adding ignore: jnr/constants/*
[INFO] Adding ignorable dependency: null:jnr-ffi:null
[INFO]   Adding ignore: jnr/ffi/*
[INFO] Adding ignorable dependency: null:VIB-lib:null
[INFO]   Adding ignore: javax/media/j3d/
[INFO] Adding ignorable dependency: null:j3d-core:null
[INFO]   Adding ignore: javax/media/j3d/
[INFO] Adding ignorable dependency: null:joda-time:null
[INFO]   Adding ignore: *
[INFO] Adding ignorable dependency: null:slf4j-log4j12:null
[INFO]   Adding ignore: org/slf4j/impl/*
[INFO] Adding ignorable dependency: batik:batik:null
[INFO]   Adding ignore: *
[INFO] Adding ignorable dependency: jama:jama:null
[INFO]   Adding ignore: Jama/*
[INFO] Adding ignorable dependency: com.sun:tools:null
[INFO]   Adding ignore: *
[INFO] 
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ FS_Align_TrakEM2 ---
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2 && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2
[INFO] Storing buildNumber: 18abdbfacb76acec23eb2cc7e390a7dcc6aea4b7 at timestamp: 1449468390290
[WARNING] Cannot get the branch information from the git repository: 
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref

[INFO] Executing: /bin/sh -c cd /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2 && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2
[INFO] Storing buildScmBranch: UNKNOWN
[INFO] 
[INFO] --- scijava-maven-plugin:0.4.4:set-rootdir (set-rootdir) @ FS_Align_TrakEM2 ---
[INFO] Setting rootdir: /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2
[INFO] 
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ FS_Align_TrakEM2 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ FS_Align_TrakEM2 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 5 source files to /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/classes
[INFO] 
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ FS_Align_TrakEM2 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/src/test/resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ FS_Align_TrakEM2 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:2.17:test (default-test) @ FS_Align_TrakEM2 ---
[INFO] No tests to run.
[INFO] 
[INFO] --- maven-jar-plugin:2.5:jar (default-jar) @ FS_Align_TrakEM2 ---
[INFO] Building jar: /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/FS_Align_TrakEM2-2.0.1.jar
[INFO] 
[INFO] --- maven-source-plugin:2.3:jar-no-fork (default) @ FS_Align_TrakEM2 ---
[INFO] Building jar: /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/FS_Align_TrakEM2-2.0.1-sources.jar
[INFO] 
[INFO] --- maven-source-plugin:2.3:jar-no-fork (attach-sources) @ FS_Align_TrakEM2 ---
[WARNING] Artifact sc.fiji:FS_Align_TrakEM2:java-source:sources:2.0.1 already attached to project, ignoring duplicate
[INFO] 
[INFO] --- maven-javadoc-plugin:2.9.1:jar (attach-javadocs) @ FS_Align_TrakEM2 ---
[INFO] 
Loading source files for package fsalign...
Constructing Javadoc information...
Standard Doclet version 1.6.0_45
Building tree for all the packages and classes...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/fsalign//FileListener.html...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/fsalign//FolderWatcher.html...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/fsalign//FolderWatcher.FolderFilter.html...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/fsalign//FS_Align_TrakEM2.html...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/fsalign//FSAlignListener.html...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/fsalign//ImageListener.html...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/fsalign//package-frame.html...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/fsalign//package-summary.html...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/fsalign//package-tree.html...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/constant-values.html...
Building index for all the packages and classes...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/overview-tree.html...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/index-all.html...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/allclasses-frame.html...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/allclasses-noframe.html...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/index.html...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/help-doc.html...
Generating /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/apidocs/stylesheet.css...
1 warning
[WARNING] Javadoc Warnings
[WARNING] /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/src/main/java/fsalign/FSAlignListener.java:137: warning - @return tag has no arguments.
[INFO] Fixed Javadoc frame injection vulnerability (CVE-2013-1571) in 1 files.
[INFO] Building jar: /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/FS_Align_TrakEM2-2.0.1-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:2.5:test-jar (default) @ FS_Align_TrakEM2 ---
[INFO] Skipping packaging of the test-jar
[INFO] 
[INFO] --- maven-install-plugin:2.5.1:install (default-install) @ FS_Align_TrakEM2 ---
[INFO] Installing /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/FS_Align_TrakEM2-2.0.1.jar to /var/lib/jenkins-maven/.m2/repository/sc/fiji/FS_Align_TrakEM2/2.0.1/FS_Align_TrakEM2-2.0.1.jar
[INFO] Installing /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/pom.xml to /var/lib/jenkins-maven/.m2/repository/sc/fiji/FS_Align_TrakEM2/2.0.1/FS_Align_TrakEM2-2.0.1.pom
[INFO] Installing /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/FS_Align_TrakEM2-2.0.1-sources.jar to /var/lib/jenkins-maven/.m2/repository/sc/fiji/FS_Align_TrakEM2/2.0.1/FS_Align_TrakEM2-2.0.1-sources.jar
[INFO] Installing /data/devel/jenkins-maven/workspace/FS_Align_TrakEM2/target/FS_Align_TrakEM2-2.0.1-javadoc.jar to /var/lib/jenkins-maven/.m2/repository/sc/fiji/FS_Align_TrakEM2/2.0.1/FS_Align_TrakEM2-2.0.1-javadoc.jar
[INFO] 
[INFO] --- imagej-maven-plugin:0.5.4:copy-jars (copy-jars) @ FS_Align_TrakEM2 ---
[INFO] Property 'imagej.app.directory' unset; Skipping copy-jars
[INFO] 
[INFO] --- maven-deploy-plugin:2.8.1:deploy (default-deploy) @ FS_Align_TrakEM2 ---
Uploading: dav:http://maven.imagej.net/content/repositories/releases/sc/fiji/FS_Align_TrakEM2/2.0.1/FS_Align_TrakEM2-2.0.1.jar
Dec 7, 2015 12:06:44 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
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Dec 7, 2015 12:06:44 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
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41/21 KB   

Uploading: http://maven.imagej.net/content/repositories/releases/sc/fiji/FS_Align_TrakEM2/2.0.1/FS_Align_TrakEM2-2.0.1.pom
Dec 7, 2015 12:06:44 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
2/2 KB     
Dec 7, 2015 12:06:44 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
3/2 KB   

[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 29.702s
[INFO] Finished at: Mon Dec 07 00:06:44 CST 2015
[INFO] Final Memory: 31M/563M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-deploy-plugin:2.8.1:deploy (default-deploy) on project FS_Align_TrakEM2: Failed to deploy artifacts: Could not transfer artifact sc.fiji:FS_Align_TrakEM2:jar:2.0.1 from/to imagej.releases (dav:http://maven.imagej.net/content/repositories/releases): Failed to transfer file: http://maven.imagej.net/content/repositories/releases/sc/fiji/FS_Align_TrakEM2/2.0.1/FS_Align_TrakEM2-2.0.1.jar. Return code is: 400 -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
Build step 'Execute shell' marked build as failure
Archiving artifacts