[ImageJ-builds] Build failed in Jenkins: Bio-Formats-Fiji #553
jenkins at imagej.net
jenkins at imagej.net
Wed Apr 15 20:26:53 CDT 2015
See <http://jenkins.imagej.net/job/Bio-Formats-Fiji/553/>
------------------------------------------
[...truncated 15 lines...]
................................................................................
................................................................................
.....................................................
Done: Checksummer
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/native-lib-loader-2.0.2.jar
[INFO] Removing jars/kryo-2.21-shaded.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/ij1-patcher-0.12.0.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/imagej-2.0.0-rc-28.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/imagej-common-0.13.0.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/imagej-ops-0.10.0.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/imagej-plugins-commands-0.4.1.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/imagej-ui-swing-0.11.0.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/imagej-updater-0.7.2.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/scijava-plugins-commands-0.1.8.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/scijava-ui-swing-0.5.0.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/scripting-java-0.3.1-SNAPSHOT.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/batik.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/jna.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/legacy-imglib1-1.1.2-DEPRECATED-SNAPSHOT.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/scifio-bf-compat-1.11.1-SNAPSHOT.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/scifio-ome-xml-0.12.1-SNAPSHOT.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/plugins/Graph_Cut-1.0.0.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/plugins/IO_-2.2.0.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/plugins/Simple_Neurite_Tracer-2.0.3.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/plugins/SPIM_Registration-2.1.4-SNAPSHOT.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/plugins/Stitching_-2.0.4-SNAPSHOT.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/plugins/Trainable_Segmentation-2.1.8.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/scifio-cli-0.3.1.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/scifio-hdf5-0.1.0.jar
[INFO] Removing jars/bio-formats/ome-jxr.jar
Downloading... (jars/native-lib-loader-2.0.3.jar)
jars/native-lib-loader-2.0.3.jar done
jars/native-lib-loader-2.0.3.jar done
jars/ij1-patcher-0.12.1.jar done
jars/ij1-patcher-0.12.1.jar done
jars/imagej-2.0.0-rc-29.jar done
jars/imagej-2.0.0-rc-29.jar done
jars/imagej-common-0.14.0.jar done
jars/imagej-common-0.14.0.jar done
jars/imagej-ops-0.11.0.jar done
jars/imagej-ops-0.11.0.jar done
jars/imagej-plugins-commands-0.5.0.jar done
jars/imagej-plugins-commands-0.5.0.jar done
jars/imagej-ui-swing-0.11.1.jar done
jars/imagej-ui-swing-0.11.1.jar done
jars/imagej-updater-0.7.3.jar done
jars/imagej-updater-0.7.3.jar done
jars/scijava-plugins-commands-0.2.0.jar done
jars/scijava-plugins-commands-0.2.0.jar done
jars/scijava-ui-swing-0.6.0.jar done
jars/scijava-ui-swing-0.6.0.jar done
jars/scripting-java-0.3.1.jar done
jars/scripting-java-0.3.1.jar done
images/about/about1.tif done
images/about/about1.tif done
images/about/about1.tif.txt done
images/about/about1.tif.txt done
images/about/about2.tif done
images/about/about2.tif done
images/about/about2.tif.txt done
images/about/about2.tif.txt done
images/about/about3.tif done
images/about/about3.tif done
images/about/about3.tif.txt done
images/about/about3.tif.txt done
images/about/about4.tif done
images/about/about4.tif done
images/about/about4.tif.txt done
images/about/about4.tif.txt done
images/about/about5.tif done
images/about/about5.tif done
images/about/about5.tif.txt done
images/about/about5.tif.txt done
jars/legacy-imglib1-1.1.4-DEPRECATED.jar done
jars/legacy-imglib1-1.1.4-DEPRECATED.jar done
jars/scifio-bf-compat-2.0.0.jar done
jars/scifio-bf-compat-2.0.0.jar done
jars/scifio-ome-xml-0.13.0.jar done
jars/scifio-ome-xml-0.13.0.jar done
plugins/blockmatching_-2.1.1.jar done
plugins/blockmatching_-2.1.1.jar done
plugins/Descriptor_based_registration-2.0.11.jar done
plugins/Descriptor_based_registration-2.0.11.jar done
plugins/Graph_Cut-1.0.1.jar done
plugins/Graph_Cut-1.0.1.jar done
plugins/IO_-2.2.1.jar done
plugins/IO_-2.2.1.jar done
plugins/mpicbg_-1.0.1.jar done
plugins/mpicbg_-1.0.1.jar done
plugins/Reconstruct_Reader-2.0.2.jar done
plugins/Reconstruct_Reader-2.0.2.jar done
plugins/register_virtual_stack_slices-2.0.3.jar done
plugins/register_virtual_stack_slices-2.0.3.jar done
Downloading... (plugins/Simple_Neurite_Tracer-2.0.4.jar)
plugins/Simple_Neurite_Tracer-2.0.4.jar done
plugins/Simple_Neurite_Tracer-2.0.4.jar done
plugins/SPIM_Registration-2.1.10.jar done
plugins/SPIM_Registration-2.1.10.jar done
plugins/Stitching_-3.0.2.jar done
plugins/Stitching_-3.0.2.jar done
plugins/Trainable_Segmentation-2.2.0.jar done
plugins/Trainable_Segmentation-2.2.0.jar done
plugins/TrakEM2_-1.0f.jar done
plugins/TrakEM2_-1.0f.jar done
jars/scifio-cli-0.3.2.jar done
jars/scifio-cli-0.3.2.jar done
jars/mpicbg-trakem2-1.2.2.jar done
jars/mpicbg-trakem2-1.2.2.jar done
jars/T2-NIT-1.1.0.jar done
jars/T2-NIT-1.1.0.jar done
jars/T2-TreelineGraph-1.1.0.jar done
jars/T2-TreelineGraph-1.1.0.jar done
jars/scifio-hdf5-0.1.1.jar done
jars/scifio-hdf5-0.1.1.jar done
plugins/FS_Align_TrakEM2-2.0.1.jar done
plugins/FS_Align_TrakEM2-2.0.1.jar done
plugins/TrakEM2_Archipelago-2.0.1.jar done
plugins/TrakEM2_Archipelago-2.0.1.jar done
jars/commons-codec-1.8.jar done
jars/commons-codec-1.8.jar done
jars/ejml-0.24.jar done
jars/ejml-0.24.jar done
jars/jitk-tps-1.1.1.jar done
jars/jitk-tps-1.1.1.jar done
jars/kryo-2.24.0.jar done
jars/kryo-2.24.0.jar done
jars/minlog-1.2.jar done
jars/minlog-1.2.jar done
jars/objenesis-2.1.jar done
jars/objenesis-2.1.jar done
jars/opencsv-2.0.jar done
jars/opencsv-2.0.jar done
jars/xercesImpl-2.8.1.jar done
jars/xercesImpl-2.8.1.jar done
Downloading... (jars/xmpcore-5.1.2.jar)
jars/xmpcore-5.1.2.jar done
jars/xmpcore-5.1.2.jar done
plugins/trakem2_tps-1.1.1.jar done
plugins/trakem2_tps-1.1.1.jar done
Done: Downloading...
Done: Downloading...
--== jars/bio-formats/formats-api ==--
2015-04-15 20:26:10 URL:https://ci.openmicroscopy.org/job/BIOFORMATS-5.1-latest/lastSuccessfulBuild/artifact/artifacts//formats-api.jar [143585/143585] -> "formats-api.jar" [1]
--== jars/bio-formats/formats-bsd ==--
2015-04-15 20:26:13 URL:https://ci.openmicroscopy.org/job/BIOFORMATS-5.1-latest/lastSuccessfulBuild/artifact/artifacts//formats-bsd.jar [678783/678783] -> "formats-bsd.jar" [1]
--== jars/bio-formats/formats-common ==--
2015-04-15 20:26:15 URL:https://ci.openmicroscopy.org/job/BIOFORMATS-5.1-latest/lastSuccessfulBuild/artifact/artifacts//formats-common.jar [113640/113640] -> "formats-common.jar" [1]
--== jars/bio-formats/formats-gpl ==--
2015-04-15 20:26:19 URL:https://ci.openmicroscopy.org/job/BIOFORMATS-5.1-latest/lastSuccessfulBuild/artifact/artifacts//formats-gpl.jar [1201393/1201393] -> "formats-gpl.jar" [1]
--== jars/bio-formats/jai_imageio ==--
2015-04-15 20:26:22 URL:https://ci.openmicroscopy.org/job/BIOFORMATS-5.1-latest/lastSuccessfulBuild/artifact/artifacts//jai_imageio.jar [1030175/1030175] -> "jai_imageio.jar" [1]
--== jars/bio-formats/mdbtools-java ==--
2015-04-15 20:26:24 URL:https://ci.openmicroscopy.org/job/BIOFORMATS-5.1-latest/lastSuccessfulBuild/artifact/artifacts//mdbtools-java.jar [86538/86538] -> "mdbtools-java.jar" [1]
--== jars/bio-formats/metakit ==--
2015-04-15 20:26:25 URL:https://ci.openmicroscopy.org/job/BIOFORMATS-5.1-latest/lastSuccessfulBuild/artifact/artifacts//metakit.jar [9327/9327] -> "metakit.jar" [1]
--== jars/bio-formats/ome-poi ==--
2015-04-15 20:26:29 URL:https://ci.openmicroscopy.org/job/BIOFORMATS-5.1-latest/lastSuccessfulBuild/artifact/artifacts//ome-poi.jar [932619/932619] -> "ome-poi.jar" [1]
--== jars/bio-formats/ome-xml ==--
2015-04-15 20:26:32 URL:https://ci.openmicroscopy.org/job/BIOFORMATS-5.1-latest/lastSuccessfulBuild/artifact/artifacts//ome-xml.jar [604562/604562] -> "ome-xml.jar" [1]
--== jars/bio-formats/specification ==--
2015-04-15 20:26:35 URL:https://ci.openmicroscopy.org/job/BIOFORMATS-5.1-latest/lastSuccessfulBuild/artifact/artifacts//specification.jar [602685/602685] -> "specification.jar" [1]
--== jars/bio-formats/turbojpeg ==--
2015-04-15 20:26:38 URL:https://ci.openmicroscopy.org/job/BIOFORMATS-5.1-latest/lastSuccessfulBuild/artifact/artifacts//turbojpeg.jar [1294471/1294471] -> "turbojpeg.jar" [1]
--== plugins/bio-formats_plugins ==--
2015-04-15 20:26:41 URL:https://ci.openmicroscopy.org/job/BIOFORMATS-5.1-latest/lastSuccessfulBuild/artifact/artifacts//bio-formats_plugins.jar [240179/240179] -> "bio-formats_plugins.jar" [1]
No GUI detected. Falling back to headless mode.
No GUI detected. Falling back to headless mode.
Updating the index of available files (Updating from ImageJ site: http://up...
Updating from ImageJ site: http://update.imagej.net/ done
Updating from Fiji site: http://fiji.sc/update/ done
Updating from Bio-Formats site: http://sites.imagej.net/Bio-Formats/ done
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
.....................................................
Done: Checksummer
No GUI detected. Falling back to headless mode.
No GUI detected. Falling back to headless mode.
Updating the index of available files (Updating from ImageJ site: http://up...
Updating from ImageJ site: http://update.imagej.net/ done
Updating from Fiji site: http://fiji.sc/update/ done
Updating from Bio-Formats site: http://sites.imagej.net/Bio-Formats/ done
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
.....................................................
Done: Checksummer
[INFO] Uploading 2 (removing 2) to Bio-Formats (webdav:Bio-Formats:<password>:./)
[ERROR] There are conflicts:
jars/netcdf-4.3.19.jar: Depends on jars/jna.jar which is about to be removed.
plugins/CPU_Meter-2.0.0.jar: Depends on jars/jna.jar which is about to be removed.
plugins/IO_-2.2.1.jar: Depends on jars/batik.jar which is about to be removed.
plugins/Simple_Neurite_Tracer-2.0.4.jar: Depends on jars/batik.jar which is about to be removed.
plugins/SPIM_Registration-2.1.10.jar: Depends on jars/jna.jar which is about to be removed.
plugins/TrackMate_-2.7.3.jar: Depends on jars/batik.jar which is about to be removed.
jars/jhdf5-14.12.0.jar: Depends on jars/batik.jar which is about to be removed.
No GUI detected. Falling back to headless mode.
No GUI detected. Falling back to headless mode.
Updating the index of available files (Updating from ImageJ site: http://up...
Updating from ImageJ site: http://update.imagej.net/ done
Updating from Fiji site: http://fiji.sc/update/ done
Updating from Bio-Formats site: http://sites.imagej.net/Bio-Formats/ done
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
.....................................................
Done: Checksummer
Build step 'Groovy Postbuild' changed build result to FAILURE
Build step 'Groovy Postbuild' marked build as failure
More information about the ImageJ-builds
mailing list