[ImageJ-builds] Build failed in Jenkins: Bio-Formats-Fiji #344

Thu Sep 25 14:31:37 CDT 2014

See <http://jenkins.imagej.net/job/Bio-Formats-Fiji/344/>

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Started by user Curtis Rueden
Building on master in workspace <http://jenkins.imagej.net/job/Bio-Formats-Fiji/ws/>
Copied 2 artifacts from "Fiji-minimal" build number 1945
[workspace] $ /bin/sh -xe /tmp/hudson9034715082980900787.sh
+ sh bin/upload-bf.sh
2014-09-25 14:30:35 URL:http://jenkins.imagej.net/job/Stable-Fiji/lastSuccessfulBuild/artifact/fiji-linux64.tar.gz [156419518/156419518] -> "fiji-linux64.tar.gz" [1]
No GUI detected.  Falling back to headless mode.
No GUI detected.  Falling back to headless mode.
Updating the index of available files (Updating from ImageJ site: http://up...
Updating from ImageJ site: http://update.imagej.net/ done
Updating from Fiji site: http://fiji.sc/update/ done
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Done: Checksummer

Downloading... (fiji-linux64) 
fiji-linux64 done
fiji-linux64 done
Done: Downloading...

Done: Downloading...

--== jars/bio-formats/formats-api ==--

2014-09-25 14:31:08 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//formats-api.jar [188672/188672] -> "formats-api.jar" [1]

--== jars/bio-formats/formats-bsd ==--

2014-09-25 14:31:11 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//formats-bsd.jar [631367/631367] -> "formats-bsd.jar" [1]

--== jars/bio-formats/formats-common ==--

2014-09-25 14:31:12 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//formats-common.jar [111526/111526] -> "formats-common.jar" [1]

--== jars/bio-formats/formats-gpl ==--

2014-09-25 14:31:15 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//formats-gpl.jar [1144027/1144027] -> "formats-gpl.jar" [1]

--== jars/bio-formats/jai_imageio ==--

2014-09-25 14:31:17 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//jai_imageio.jar [1030174/1030174] -> "jai_imageio.jar" [1]

--== jars/bio-formats/mdbtools-java ==--

2014-09-25 14:31:18 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//mdbtools-java.jar [86539/86539] -> "mdbtools-java.jar" [1]

--== jars/bio-formats/metakit ==--

2014-09-25 14:31:19 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//metakit.jar [9324/9324] -> "metakit.jar" [1]

--== jars/bio-formats/ome-poi ==--

2014-09-25 14:31:22 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//ome-poi.jar [932618/932618] -> "ome-poi.jar" [1]

--== jars/bio-formats/ome-xml ==--

2014-09-25 14:31:24 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//ome-xml.jar [504452/504452] -> "ome-xml.jar" [1]

--== jars/bio-formats/specification ==--

2014-09-25 14:31:25 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//specification.jar [524516/524516] -> "specification.jar" [1]

--== jars/bio-formats/turbojpeg ==--

2014-09-25 14:31:29 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//turbojpeg.jar [1294472/1294472] -> "turbojpeg.jar" [1]

--== plugins/bio-formats_plugins ==--

2014-09-25 14:31:30 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//bio-formats_plugins.jar [230636/230636] -> "bio-formats_plugins.jar" [1]
No GUI detected.  Falling back to headless mode.
No GUI detected.  Falling back to headless mode.
Updating the index of available files (Updating from ImageJ site: http://up...
Updating from ImageJ site: http://update.imagej.net/ done
Updating from Fiji site: http://fiji.sc/update/ done
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..
Done: Checksummer

java.lang.NullPointerException
	at net.imagej.updater.CommandLine.addOrEditUploadSite(CommandLine.java:1255)
	at net.imagej.updater.CommandLine.addOrEditUploadSite(CommandLine.java:1240)
	at net.imagej.updater.CommandLine.main(CommandLine.java:1465)
	at net.imagej.updater.CommandLine.main(CommandLine.java:1372)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at net.imagej.launcher.ClassLauncher.launch(ClassLauncher.java:258)
	at net.imagej.launcher.ClassLauncher.run(ClassLauncher.java:184)
	at net.imagej.launcher.ClassLauncher.main(ClassLauncher.java:76)
No GUI detected.  Falling back to headless mode.
No GUI detected.  Falling back to headless mode.
Updating the index of available files (Updating from ImageJ site: http://up...
Updating from ImageJ site: http://update.imagej.net/ done
Updating from Fiji site: http://fiji.sc/update/ done
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................................................................................
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..
Done: Checksummer

[ERROR] Unknown update site 'Bio-Formats'
No GUI detected.  Falling back to headless mode.
No GUI detected.  Falling back to headless mode.
Updating the index of available files (Updating from ImageJ site: http://up...
Updating from ImageJ site: http://update.imagej.net/ done
Updating from Fiji site: http://fiji.sc/update/ done
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
..
Done: Checksummer

java.lang.NullPointerException
	at net.imagej.updater.CommandLine.addOrEditUploadSite(CommandLine.java:1255)
	at net.imagej.updater.CommandLine.addOrEditUploadSite(CommandLine.java:1240)
	at net.imagej.updater.CommandLine.main(CommandLine.java:1465)
	at net.imagej.updater.CommandLine.main(CommandLine.java:1372)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at net.imagej.launcher.ClassLauncher.launch(ClassLauncher.java:258)
	at net.imagej.launcher.ClassLauncher.run(ClassLauncher.java:184)
	at net.imagej.launcher.ClassLauncher.main(ClassLauncher.java:76)
Build step 'Execute shell' marked build as failure
Build step 'Groovy Postbuild' marked build as failure