[ImageJ-builds] Build failed in Jenkins: Bio-Formats-Fiji #342

Wed Sep 24 20:29:55 CDT 2014

See <http://jenkins.imagej.net/job/Bio-Formats-Fiji/342/>

------------------------------------------
Started by timer
Building on master in workspace <http://jenkins.imagej.net/job/Bio-Formats-Fiji/ws/>
Copied 2 artifacts from "Fiji-minimal" build number 1945
[workspace] $ /bin/sh -xe /tmp/hudson1837156335860939857.sh
+ sh bin/upload-bf.sh
No GUI detected.  Falling back to headless mode.
No GUI detected.  Falling back to headless mode.
Updating the index of available files (Updating from ImageJ site: http://up...
java.net.SocketException: Connection reset
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
	at sun.net.www.protocol.http.HttpURLConnection$6.run(HttpURLConnection.java:1491)
	at java.security.AccessController.doPrivileged(Native Method)
	at sun.net.www.protocol.http.HttpURLConnection.getChainedException(HttpURLConnection.java:1485)
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1139)
	at net.imagej.updater.XMLFileDownloader.start(XMLFileDownloader.java:91)
	at net.imagej.updater.FilesCollection.downloadIndexAndChecksum(FilesCollection.java:1147)
	at net.imagej.updater.CommandLine.ensureChecksummed(CommandLine.java:122)
	at net.imagej.updater.CommandLine.update(CommandLine.java:520)
	at net.imagej.updater.CommandLine.main(CommandLine.java:1453)
	at net.imagej.updater.CommandLine.main(CommandLine.java:1372)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at net.imagej.launcher.ClassLauncher.launch(ClassLauncher.java:258)
	at net.imagej.launcher.ClassLauncher.run(ClassLauncher.java:184)
	at net.imagej.launcher.ClassLauncher.main(ClassLauncher.java:76)
Caused by: java.net.SocketException: Connection reset
	at java.net.SocketInputStream.read(SocketInputStream.java:168)
	at java.io.BufferedInputStream.fill(BufferedInputStream.java:218)
	at java.io.BufferedInputStream.read1(BufferedInputStream.java:258)
	at java.io.BufferedInputStream.read(BufferedInputStream.java:317)
	at sun.net.www.http.HttpClient.parseHTTPHeader(HttpClient.java:687)
	at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:632)
	at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:652)
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1195)
	at sun.net.www.protocol.http.HttpURLConnection.getHeaderField(HttpURLConnection.java:2304)
	at java.net.HttpURLConnection.getHeaderFieldDate(HttpURLConnection.java:450)
	at java.net.URLConnection.getLastModified(URLConnection.java:532)
	at net.imagej.updater.XMLFileDownloader.start(XMLFileDownloader.java:89)
	... 12 more
Updating from ImageJ site: http://update.imagej.net/ done
Updating the index of available files (Updating from Fiji site: http://fiji...
Updating from Fiji site: http://fiji.sc/update/ done
Updating from Bio-Formats site: http://sites.imagej.net/Bio-Formats/ done
................................................................................
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................................................................................
................................................................................
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Done: Checksummer

[WARNING] Could not update from site 'ImageJ': java.net.SocketException: Connection reset

[INFO] Removing jars/imglib2-ops-2.0.0-beta-26.jar
[INFO] Removing jars/scifio-0.14.2.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/scifio-0.16.3.jar
[INFO] Removing jars/javassist.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/javassist-3.16.1-GA.jar
[INFO] Removing jars/jsch.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/jsch-0.1.49.jar
[INFO] Removing jars/jfreechart.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/jfreechart-1.0.14.jar
[INFO] Removing jars/imglib2-algorithms-2.0.0-beta-26.jar
[INFO] Removing jars/ij.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/ij-1.49g.jar
[INFO] Removing jars/imglib2-2.0.0-beta-26.jar
[INFO] Removing jars/jcommon.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/jcommon-1.0.17.jar
[INFO] Removing ImageJ-linux64
[INFO] Removing ImageJ-win64.exe
[INFO] Removing jars/bsh.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/bsh-2.0b4.jar
[INFO] Removing jars/rsyntaxtextarea.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/rsyntaxtextarea-2.5.2.jar
[INFO] Removing jars/imglib2-ij-2.0.0-beta-26.jar
[INFO] Removing jars/imglib2-meta-2.0.0-beta-26.jar
[INFO] Removing jars/clojure.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/clojure-1.3.0.jar
[INFO] Removing jars/imagej-legacy-0.5.4.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/imagej-legacy-0.8.4.jar
[INFO] Removing jars/imglib2-realtransform-2.0.0-beta-26.jar
[INFO] Removing jars/joda-time-2.2.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/joda-time-2.3.jar
[INFO] Removing jars/jzlib.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-Fiji/workspace/Fiji.app/jars/jzlib-1.1.2.jar
Done: Downloading...

Done: Downloading...

--== jars/bio-formats/formats-api ==--

2014-09-24 20:29:33 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//formats-api.jar [188673/188673] -> "formats-api.jar" [1]

--== jars/bio-formats/formats-bsd ==--

2014-09-24 20:29:36 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//formats-bsd.jar [631367/631367] -> "formats-bsd.jar" [1]

--== jars/bio-formats/formats-common ==--

2014-09-24 20:29:37 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//formats-common.jar [111526/111526] -> "formats-common.jar" [1]

--== jars/bio-formats/formats-gpl ==--

2014-09-24 20:29:40 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//formats-gpl.jar [1144027/1144027] -> "formats-gpl.jar" [1]

--== jars/bio-formats/jai_imageio ==--

2014-09-24 20:29:43 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//jai_imageio.jar [1030174/1030174] -> "jai_imageio.jar" [1]

--== jars/bio-formats/mdbtools-java ==--

2014-09-24 20:29:44 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//mdbtools-java.jar [86539/86539] -> "mdbtools-java.jar" [1]

--== jars/bio-formats/metakit ==--

2014-09-24 20:29:44 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//metakit.jar [9324/9324] -> "metakit.jar" [1]

--== jars/bio-formats/ome-poi ==--

2014-09-24 20:29:47 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//ome-poi.jar [932618/932618] -> "ome-poi.jar" [1]

--== jars/bio-formats/ome-xml ==--

2014-09-24 20:29:49 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//ome-xml.jar [504452/504452] -> "ome-xml.jar" [1]

--== jars/bio-formats/specification ==--

2014-09-24 20:29:50 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//specification.jar [524516/524516] -> "specification.jar" [1]

--== jars/bio-formats/turbojpeg ==--

2014-09-24 20:29:54 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//turbojpeg.jar [1294472/1294472] -> "turbojpeg.jar" [1]

--== plugins/bio-formats_plugins ==--

2014-09-24 20:29:55 URL:http://ci.openmicroscopy.org/job/BIOFORMATS-5.0-latest/lastSuccessfulBuild/artifact/artifacts//bio-formats_plugins.jar [230636/230636] -> "bio-formats_plugins.jar" [1]
bin/upload-update-site.sh: 90: bin/upload-update-site.sh: ./ImageJ-linux64: not found
bin/upload-update-site.sh: 92: bin/upload-update-site.sh: ./ImageJ-linux64: not found
bin/upload-update-site.sh: 93: bin/upload-update-site.sh: ./ImageJ-linux64: not found
Build step 'Execute shell' marked build as failure
Build step 'Groovy Postbuild' marked build as failure