[ImageJ-builds] Build failed in Jenkins: SPIM_Registration #6

Wed Sep 17 04:59:09 CDT 2014

See <http://jenkins.imagej.net/job/SPIM_Registration/6/>

------------------------------------------
Started by user Johannes Schindelin
Building on master in workspace <http://jenkins.imagej.net/job/SPIM_Registration/ws/>
Fetching changes from the remote Git repository
Fetching upstream changes from https://github.com/fiji/SPIM_Registration
Checking out Revision ebb115caa116fe802a59a27c9640356046981402 (origin/master)
First time build. Skipping changelog.
[workspace] $ /bin/sh -xe /tmp/hudson9175186558952897016.sh
+ git clean -dfx
Removing target/
[workspace] $ /bin/sh -xe /tmp/hudson402688450495727996.sh
+ mvn -DupdateReleaseInfo=true -Pdeploy-to-imagej deploy
[INFO] Scanning for projects...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building SPIM Registration 2.0.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[WARNING] The POM for sc.fiji:fiji-lib:jar:2.0.0 is invalid, transitive dependencies (if any) will not be available, enable debug logging for more details
Downloading: http://maven.imagej.net/content/groups/public/sc/fiji/spim_data/1.0.0-beta-3-SNAPSHOT/maven-metadata.xml
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Downloaded: http://maven.imagej.net/content/groups/public/sc/fiji/spim_data/1.0.0-beta-3-SNAPSHOT/maven-metadata.xml (2 KB at 1.3 KB/sec)
Downloading: http://maven.imagej.net/content/groups/public/sc/fiji/bigdataviewer-core/1.0.0-SNAPSHOT/maven-metadata.xml
2/2 KB   

Downloaded: http://maven.imagej.net/content/groups/public/sc/fiji/bigdataviewer-core/1.0.0-SNAPSHOT/maven-metadata.xml (2 KB at 1.9 KB/sec)
Downloading: http://maven.imagej.net/content/groups/public/sc/fiji/bigdataviewer/1.0.0-SNAPSHOT/maven-metadata.xml
Downloading: http://maven.imagej.net/content/repositories/releases/sc/fiji/bigdataviewer/1.0.0-SNAPSHOT/maven-metadata.xml
Downloading: http://maven.imagej.net/content/repositories/thirdparty/sc/fiji/bigdataviewer/1.0.0-SNAPSHOT/maven-metadata.xml
Downloading: http://maven.imagej.net/content/repositories/snapshots/sc/fiji/bigdataviewer/1.0.0-SNAPSHOT/maven-metadata.xml

599/599 B   

Downloaded: http://maven.imagej.net/content/repositories/snapshots/sc/fiji/bigdataviewer/1.0.0-SNAPSHOT/maven-metadata.xml (599 B at 25.4 KB/sec)
599/599 B   

Downloaded: http://maven.imagej.net/content/groups/public/sc/fiji/bigdataviewer/1.0.0-SNAPSHOT/maven-metadata.xml (599 B at 1.0 KB/sec)
[INFO] 
[INFO] --- scijava-maven-plugin:0.1.1:set-rootdir (set-rootdir) @ SPIM_Registration ---
[INFO] Setting rootdir: /data/devel/jenkins/jobs/SPIM_Registration/workspace
[INFO] 
[INFO] --- buildnumber-maven-plugin:1.2:create (default) @ SPIM_Registration ---
[INFO] Checking for local modifications: skipped.
[INFO] Updating project files from SCM: skipped.
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/SPIM_Registration/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/SPIM_Registration/workspace
[INFO] Storing buildNumber: ebb115caa116fe802a59a27c9640356046981402 at timestamp: 1410947943120
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/SPIM_Registration/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/SPIM_Registration/workspace
[INFO] Storing buildScmBranch: UNKNOWN
[INFO] 
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ SPIM_Registration ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ SPIM_Registration ---
[INFO] Compiling 289 source files to /data/devel/jenkins/jobs/SPIM_Registration/workspace/target/classes
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/fiji/spimdata/imgloaders/AbstractImgLoader.java:[42,4] reference to FinalDimensions is ambiguous, both method FinalDimensions(long...) in net.imglib2.FinalDimensions and method FinalDimensions(int...) in net.imglib2.FinalDimensions match
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessIndependent.java:[157,7] inconvertible types
found   : T
required: net.imglib2.type.numeric.real.FloatType
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessIndependent.java:[158,64] inconvertible types
found   : net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>
required: net.imglib2.RandomAccessibleInterval<T>
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessIndependent.java:[159,12] inconvertible types
found   : T
required: net.imglib2.type.numeric.integer.UnsignedShortType
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessSequential.java:[237,7] inconvertible types
found   : T
required: net.imglib2.type.numeric.real.FloatType
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessSequential.java:[238,64] inconvertible types
found   : net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>
required: net.imglib2.RandomAccessibleInterval<T>
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessSequential.java:[239,12] inconvertible types
found   : T
required: net.imglib2.type.numeric.integer.UnsignedShortType
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/interestpointregistration/GlobalOpt.java:[111,21] inconvertible types
found   : M
required: mpicbg.models.RigidModel3D
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/interestpointregistration/GlobalOpt.java:[112,85] inconvertible types
found   : M
required: mpicbg.models.RigidModel3D
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessParalell.java:[146,7] inconvertible types
found   : T
required: net.imglib2.type.numeric.real.FloatType
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessParalell.java:[147,64] inconvertible types
found   : net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>
required: net.imglib2.RandomAccessibleInterval<T>
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessParalell.java:[148,12] inconvertible types
found   : T
required: net.imglib2.type.numeric.integer.UnsignedShortType
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/deconvolution/ProcessForDeconvolution.java:[501,7] inconvertible types
found   : T
required: net.imglib2.type.numeric.real.FloatType
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/deconvolution/ProcessForDeconvolution.java:[502,103] inconvertible types
found   : net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>
required: net.imglib2.RandomAccessibleInterval<T>
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/deconvolution/ProcessForDeconvolution.java:[503,12] inconvertible types
found   : T
required: net.imglib2.type.numeric.integer.UnsignedShortType
[INFO] 15 errors 
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 11.511s
[INFO] Finished at: Wed Sep 17 04:59:09 CDT 2014
[INFO] Final Memory: 39M/471M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.3.2:compile (default-compile) on project SPIM_Registration: Compilation failure: Compilation failure:
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/fiji/spimdata/imgloaders/AbstractImgLoader.java:[42,4] reference to FinalDimensions is ambiguous, both method FinalDimensions(long...) in net.imglib2.FinalDimensions and method FinalDimensions(int...) in net.imglib2.FinalDimensions match
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessIndependent.java:[157,7] inconvertible types
[ERROR] found   : T
[ERROR] required: net.imglib2.type.numeric.real.FloatType
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessIndependent.java:[158,64] inconvertible types
[ERROR] found   : net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>
[ERROR] required: net.imglib2.RandomAccessibleInterval<T>
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessIndependent.java:[159,12] inconvertible types
[ERROR] found   : T
[ERROR] required: net.imglib2.type.numeric.integer.UnsignedShortType
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessSequential.java:[237,7] inconvertible types
[ERROR] found   : T
[ERROR] required: net.imglib2.type.numeric.real.FloatType
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessSequential.java:[238,64] inconvertible types
[ERROR] found   : net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>
[ERROR] required: net.imglib2.RandomAccessibleInterval<T>
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessSequential.java:[239,12] inconvertible types
[ERROR] found   : T
[ERROR] required: net.imglib2.type.numeric.integer.UnsignedShortType
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/interestpointregistration/GlobalOpt.java:[111,21] inconvertible types
[ERROR] found   : M
[ERROR] required: mpicbg.models.RigidModel3D
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/interestpointregistration/GlobalOpt.java:[112,85] inconvertible types
[ERROR] found   : M
[ERROR] required: mpicbg.models.RigidModel3D
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessParalell.java:[146,7] inconvertible types
[ERROR] found   : T
[ERROR] required: net.imglib2.type.numeric.real.FloatType
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessParalell.java:[147,64] inconvertible types
[ERROR] found   : net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>
[ERROR] required: net.imglib2.RandomAccessibleInterval<T>
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/weightedavg/ProcessParalell.java:[148,12] inconvertible types
[ERROR] found   : T
[ERROR] required: net.imglib2.type.numeric.integer.UnsignedShortType
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/deconvolution/ProcessForDeconvolution.java:[501,7] inconvertible types
[ERROR] found   : T
[ERROR] required: net.imglib2.type.numeric.real.FloatType
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/deconvolution/ProcessForDeconvolution.java:[502,103] inconvertible types
[ERROR] found   : net.imglib2.RandomAccessibleInterval<net.imglib2.type.numeric.real.FloatType>
[ERROR] required: net.imglib2.RandomAccessibleInterval<T>
[ERROR] /data/devel/jenkins/jobs/SPIM_Registration/workspace/src/main/java/spim/process/fusion/deconvolution/ProcessForDeconvolution.java:[503,12] inconvertible types
[ERROR] found   : T
[ERROR] required: net.imglib2.type.numeric.integer.UnsignedShortType
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Build step 'Execute shell' marked build as failure
Archiving artifacts