[ImageJ-builds] Build failed in Jenkins: Image_Expression_Parser #11
jenkins at imagej.net
jenkins at imagej.net
Fri Oct 24 15:43:51 CDT 2014
See <http://jenkins.imagej.net/job/Image_Expression_Parser/11/changes>
Changes:
[Johannes Schindelin] Switch to ImgLib2
------------------------------------------
Started by an SCM change
Building on master in workspace <http://jenkins.imagej.net/job/Image_Expression_Parser/ws/>
Fetching changes from the remote Git repository
Fetching upstream changes from https://github.com/fiji/Image_Expression_Parser
Checking out Revision df7b4c4d8a8e6eea7d4d26c778d690a3585fb332 (origin/master)
[workspace] $ /bin/sh -xe /tmp/hudson3866514406079176591.sh
+ git clean -dfx
Removing target/
[workspace] $ /bin/sh -xe /tmp/hudson194890405961437726.sh
+ mvn -DupdateReleaseInfo=true -Pdeploy-to-imagej deploy
[INFO] Scanning for projects...
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building plugins/Image_Expression_Parser.jar 3.0.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- scijava-maven-plugin:0.1.1:set-rootdir (set-rootdir) @ Image_Expression_Parser ---
[INFO] Setting rootdir: /data/devel/jenkins/jobs/Image_Expression_Parser/workspace
[INFO]
[INFO] --- buildnumber-maven-plugin:1.2:create (default) @ Image_Expression_Parser ---
[INFO] Checking for local modifications: skipped.
[INFO] Updating project files from SCM: skipped.
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Image_Expression_Parser/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Image_Expression_Parser/workspace
[INFO] Storing buildNumber: df7b4c4d8a8e6eea7d4d26c778d690a3585fb332 at timestamp: 1414183428306
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Image_Expression_Parser/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Image_Expression_Parser/workspace
[INFO] Storing buildScmBranch: UNKNOWN
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ Image_Expression_Parser ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO]
[INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ Image_Expression_Parser ---
[INFO] Compiling 39 source files to /data/devel/jenkins/jobs/Image_Expression_Parser/workspace/target/classes
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ Image_Expression_Parser ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Image_Expression_Parser/workspace/src/test/resources
[INFO]
[INFO] --- maven-compiler-plugin:2.3.2:testCompile (default-testCompile) @ Image_Expression_Parser ---
[INFO] Compiling 6 source files to /data/devel/jenkins/jobs/Image_Expression_Parser/workspace/target/test-classes
[INFO]
[INFO] --- maven-surefire-plugin:2.17:test (default-test) @ Image_Expression_Parser ---
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Image_Expression_Parser/workspace/target/surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running fiji.expressionparser.test.TestSingleOperandPixelBasedOperators
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.104 sec - in fiji.expressionparser.test.TestSingleOperandPixelBasedOperators
Running fiji.expressionparser.test.TestTwoOperandsPixelBasedFunctions
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec - in fiji.expressionparser.test.TestTwoOperandsPixelBasedFunctions
Running fiji.expressionparser.test.TestSingleOperandPixelBasedFunctions
Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.031 sec - in fiji.expressionparser.test.TestSingleOperandPixelBasedFunctions
Running fiji.expressionparser.test.TestImgLibAlgorithms
java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException: -30
at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:222)
at java.util.concurrent.FutureTask.get(FutureTask.java:83)
at net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution.convolveOffset(SeparableSymmetricConvolution.java:389)
at net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution.convolve(SeparableSymmetricConvolution.java:282)
at net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution.convolveRealTypeFloat(SeparableSymmetricConvolution.java:137)
at net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution.convolve(SeparableSymmetricConvolution.java:118)
at net.imglib2.algorithm.gauss3.Gauss3.gauss(Gauss3.java:202)
at net.imglib2.algorithm.gauss3.Gauss3.gauss(Gauss3.java:127)
at net.imglib2.algorithm.gauss3.Gauss3.gauss(Gauss3.java:88)
at fiji.expressionparser.function.ImgLibGaussConv.evaluate(ImgLibGaussConv.java:48)
at fiji.expressionparser.function.TwoOperandsAbstractFunction.run(TwoOperandsAbstractFunction.java:30)
at org.nfunk.jep.EvaluatorVisitor.visit(EvaluatorVisitor.java:259)
at org.nfunk.jep.ASTFunNode.jjtAccept(ASTFunNode.java:49)
at org.nfunk.jep.EvaluatorVisitor.getValue(EvaluatorVisitor.java:96)
at org.nfunk.jep.JEP.evaluate(JEP.java:548)
at fiji.expressionparser.test.TestUtilities.getEvaluationResult(TestUtilities.java:95)
at fiji.expressionparser.test.TestUtilities.doTest(TestUtilities.java:61)
at fiji.expressionparser.test.TestImgLibAlgorithms.gaussianConvolution(TestImgLibAlgorithms.java:109)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47)
at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12)
at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44)
at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17)
at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70)
at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50)
at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238)
at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63)
at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236)
at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53)
at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229)
at org.junit.runners.ParentRunner.run(ParentRunner.java:309)
at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:264)
at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:153)
at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:124)
at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:200)
at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:153)
at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:103)
Caused by: java.lang.ArrayIndexOutOfBoundsException: -30
at net.imglib2.img.basictypeaccess.array.FloatArray.getValue(FloatArray.java:65)
at net.imglib2.type.numeric.real.FloatType.get(FloatType.java:113)
at net.imglib2.type.numeric.real.FloatType.getRealFloat(FloatType.java:124)
at net.imglib2.algorithm.gauss3.FloatConvolverRealTypeBuffered.run(FloatConvolverRealTypeBuffered.java:113)
at net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution$1.call(SeparableSymmetricConvolution.java:359)
at net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution$1.call(SeparableSymmetricConvolution.java:341)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
at java.lang.Thread.run(Thread.java:662)
---
Assertion failed on gauss(C,0.8408964) with error image:
ArrayImg [4x4]
0. 1. 2. 3.
0. - 0.0e+00 0.0e+00 0.0e+00 0.0e+00
1. - 0.0e+00 6.7e-07 2.3e-05 1.9e-04
2. - 0.0e+00 2.3e-05 7.9e-04 6.6e-03
3. - 0.0e+00 1.9e-04 6.6e-03 5.5e-02
Tests run: 7, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 0.037 sec <<< FAILURE! - in fiji.expressionparser.test.TestImgLibAlgorithms
gaussianConvolution(fiji.expressionparser.test.TestImgLibAlgorithms) Time elapsed: 0.031 sec <<< FAILURE!
java.lang.AssertionError: null
at org.junit.Assert.fail(Assert.java:86)
at org.junit.Assert.assertTrue(Assert.java:41)
at org.junit.Assert.assertTrue(Assert.java:52)
at fiji.expressionparser.test.TestUtilities.doTest(TestUtilities.java:68)
at fiji.expressionparser.test.TestImgLibAlgorithms.gaussianConvolution(TestImgLibAlgorithms.java:109)
Running fiji.expressionparser.test.TestTwoOperandsPixelBasedOperators
Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.018 sec - in fiji.expressionparser.test.TestTwoOperandsPixelBasedOperators
Results :
Failed tests:
TestImgLibAlgorithms.gaussianConvolution:109 null
Tests run: 38, Failures: 1, Errors: 0, Skipped: 0
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 5.611s
[INFO] Finished at: Fri Oct 24 15:43:51 CDT 2014
[INFO] Final Memory: 21M/360M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-surefire-plugin:2.17:test (default-test) on project Image_Expression_Parser: There are test failures.
[ERROR]
[ERROR] Please refer to /data/devel/jenkins/jobs/Image_Expression_Parser/workspace/target/surefire-reports for the individual test results.
[ERROR] -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
Build step 'Execute shell' marked build as failure
Archiving artifacts
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