[ImageJ-builds] Build failed in Jenkins: Synchronize-and-deploy-IJ1 #5152

jenkins at imagej.net jenkins at imagej.net
Sun Nov 9 23:04:19 CST 2014 

See <http://jenkins.imagej.net/job/Synchronize-and-deploy-IJ1/5152/>

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+ cd source
+ pwd
+ export GIT_WORK_TREE=/data/devel/jenkins/jobs/Synchronize-and-deploy-IJ1/workspace/tmpCommit/source
+ find ( -name .DS_Store -name .FBCIndex -o -name .FBCLockFolder -o -name .gdb_history ) -exec rm -rf {} ;
find: `./.FBCLockFolder': No such file or directory
+ echo No temporary files removed
No temporary files removed
+ + xargs -0 perl /data/devel/jenkins/jobs/Synchronize-and-deploy-IJ1/workspace/tools/mac2unix.pl
find -type f -print0
+ + xargs -0 git update-index --add
find -type f -print0
+ git write-tree
+ tree=8d526473875931a405dcf068f1fc57d7a9e9911a
+ export GIT_AUTHOR_NAME=Wayne Rasband
+ export GIT_AUTHOR_EMAIL=wsr at nih.gov
+ + echogit commit-tree 8d526473875931a405dcf068f1fc57d7a9e9911a -p 26e90d795f640058ee9b10cbc262dcaf255aa402
   • 1.49k 9 November 2014
      □ Thanks to Hermann-Josef Roeser, the Histogram command does a
        better job of plotting histograms with more than 256 bins. To
        get a dialog that allows you to specify the number of bins, run
        the Histogram command by pressing alt-h.
      □ Thanks to Michael Schmid, the Process>FFT>FD Math command
        limits the image choices to power of 2 sizes and spatially
        calibrates the output image.
      □ The table created by clicking on "List" in histogram windows is
        now a results table.
      □ Thanks to Michael Schmid, the "B&C" tool no longer disables
        undo.
      □ When running on Java 8, ImageJ uses the Rhino JavaScript engine
        instead of the built in, but incompatible, Nashorn engine.
      □ Thanks to Christophe Leterrier and Johannes Schindelin, the
        JavaScript interpreter now supports the load() function.
      □ Thanks to Philippe Carl, an ROI selected in the ROI Manager is
        deselected when it is removed from the image.
      □ Thanks to Thomas Templier, the ImageCanvas.setSourceRect()
        method now sets the magnification and is more robust (
        JavaScript example).
      □ Thanks to Johannes Schindelin, added the ij.macro.Debugger
        interface.
      □ Thanks to Glen MacDonald, the run("Make Binary") macro function
        now supports a 'slice' option that allows stacks to be
        converted to binary using custom thresholding methods (example
        ).
      □ Thanks to Glen MacDonald, fixed several bugs in the Make Binary
        and Convert to Mask commands.
      □ Thanks to Gerhard Hahm, fixed a bug that caused the
        imageCalculator() macro function to not select the first
        (output) image in batch mode macros.
      □ Thanks to Johan, fixed a bug that caused the calibration to not
        be updated after updating an existing plot window using the
        Plot.update() macro function.
      □ Thanks to Michael Schmid, fixed a bug that caused Edit>
        Selection>Create Mask to not maintain the spatial calibration
        when converting selections into masks.
      □ Thanks to Hermann-Josef Roeser, fixed a bug that caused ImageJ
        to not correctly open 16-bit, 4 samples per pixel TIFFs, such
        as those created by VueScan.
+ commit=90085317cb9ba858c1eac5f0225c89213d44dbfe
+ git update-ref refs/heads/imagej 90085317cb9ba858c1eac5f0225c89213d44dbfe
+ cd ../..
+ rm -rf tmpCommit tmpIndex
+ dirname tools/jenkins-job.sh
+ sh -x tools/sync-with-imagej.sh
+ URL=git://github.com/imagej/ImageJA
+ BRANCH=refs/heads/master
+ IJ1BRANCH=refs/heads/imagej
+ test a--wayne = a
+ NEED_TO_UPDATE_WORKING_TREE=
+ git config --bool core.bare
+ test false = true
+ git symbolic-ref HEAD
+ test refs/heads/master != 
+ git fetch git://github.com/imagej/ImageJA refs/heads/master
+ ERROR=From git://github.com/imagej/ImageJA
 * branch            master     -> FETCH_HEAD
+ git rev-parse refs/heads/master
+ HEAD=dbb542f93aada1a87b8df068b3c7fd1a709fd949
+ test -z 
+ git push . FETCH_HEAD:refs/heads/master
To .
 ! [rejected]        FETCH_HEAD -> master (non-fast-forward)
error: failed to push some refs to '.'
To prevent you from losing history, non-fast-forward updates were rejected
Merge the remote changes (e.g. 'git pull') before pushing again.  See the
'Note about fast-forwards' section of 'git push --help' for details.
+ die Could not pull refs/heads/master
+ echo Could not pull refs/heads/master
Could not pull refs/heads/master
+ exit 1
+ echo Could not update 'master'
Could not update 'master'
+ exit 1
Build step 'Execute shell' marked build as failure

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