[ImageJ-builds] Build failed in Jenkins: Trainable_Segmentation #36
jenkins at imagej.net
jenkins at imagej.net
Fri Nov 7 09:41:05 CST 2014
See <http://jenkins.imagej.net/job/Trainable_Segmentation/36/changes>
Changes:
[Curtis Rueden] POM: add ignore rule to make enforcer happy
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[...truncated 8 lines...]
+ mvn -DupdateReleaseInfo=true -Ddeploy-to-imagej deploy
[INFO] Scanning for projects...
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building plugins/Trainable_Segmentation.jar 2.1.1
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-rules) @ Trainable_Segmentation ---
[INFO] Adding ignorable dependency: null:imglib2-algorithm:null
[INFO] Adding ignore: net/imglib2/algorithm/region/localneighborhood/*
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ Trainable_Segmentation ---
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Trainable_Segmentation/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Trainable_Segmentation/workspace
[INFO] Storing buildNumber: 748517d171d1445077027ba64f5d45addebc670d at timestamp: 1415374849029
[WARNING] Cannot get the branch information from the git repository:
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Trainable_Segmentation/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Trainable_Segmentation/workspace
[INFO] Storing buildScmBranch: UNKNOWN
[INFO]
[INFO] --- scijava-maven-plugin:0.2.0:set-rootdir (set-rootdir) @ Trainable_Segmentation ---
[INFO] Setting rootdir: /data/devel/jenkins/jobs/Trainable_Segmentation/workspace
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ Trainable_Segmentation ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 4 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ Trainable_Segmentation ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 41 source files to /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/target/classes
[WARNING] Note: /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/utils/Utils.java uses or overrides a deprecated API.
[WARNING] Note: Recompile with -Xlint:deprecation for details.
[WARNING] Note: Some input files use unchecked or unsafe operations.
[WARNING] Note: Recompile with -Xlint:unchecked for details.
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ Trainable_Segmentation ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO]
[INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ Trainable_Segmentation ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 2 source files to /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/target/test-classes
[INFO]
[INFO] --- maven-surefire-plugin:2.17:test (default-test) @ Trainable_Segmentation ---
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/target/surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running trainableSegmentation.BasicTest
Initializing loaded data...
Added 2 instances of 'class 2'.
Added 2 instances of 'class 1'.
Training dataset updated (4 instances, 77 attributes, 2 classes).
Training from loaded data only...
Taking loaded data as only data...
Training classifier...
(process:24825): GConf-WARNING **: Client failed to connect to the D-BUS daemon:
Unable to autolaunch a dbus-daemon without a $DISPLAY for X11
GConf Error: No D-BUS daemon running
FastRandomForest of 200 trees, each constructed while considering 2 random features.
Out of bag error: 50%
Finished training in 111ms
Creating feature stack...
Updating features of slice number 1...
Feature stack array is now updated (1 slice(s) with 76 features, took 40ms).
Classifying whole image using 16 thread(s)...
Classifying whole image data took: 36ms
Finished segmentation of whole image.
Tests run: 2, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.421 sec - in trainableSegmentation.BasicTest
Results :
Tests run: 2, Failures: 0, Errors: 0, Skipped: 1
[INFO]
[INFO] --- maven-jar-plugin:2.5:jar (default-jar) @ Trainable_Segmentation ---
[INFO] Building jar: /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/target/Trainable_Segmentation-2.1.1.jar
[INFO]
[INFO] >>> maven-source-plugin:2.3:jar (default) @ Trainable_Segmentation >>>
[INFO]
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-rules) @ Trainable_Segmentation ---
[INFO] Adding ignorable dependency: null:imglib2-algorithm:null
[INFO] Adding ignore: net/imglib2/algorithm/region/localneighborhood/*
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ Trainable_Segmentation ---
[INFO]
[INFO] --- scijava-maven-plugin:0.2.0:set-rootdir (set-rootdir) @ Trainable_Segmentation ---
[INFO]
[INFO] <<< maven-source-plugin:2.3:jar (default) @ Trainable_Segmentation <<<
[INFO]
[INFO] --- maven-source-plugin:2.3:jar (default) @ Trainable_Segmentation ---
[INFO] Building jar: /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/target/Trainable_Segmentation-2.1.1-sources.jar
[INFO]
[INFO] >>> maven-source-plugin:2.3:jar (attach-sources) @ Trainable_Segmentation >>>
[INFO]
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-rules) @ Trainable_Segmentation ---
[INFO] Adding ignorable dependency: null:imglib2-algorithm:null
[INFO] Adding ignore: net/imglib2/algorithm/region/localneighborhood/*
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ Trainable_Segmentation ---
[INFO]
[INFO] --- scijava-maven-plugin:0.2.0:set-rootdir (set-rootdir) @ Trainable_Segmentation ---
[INFO]
[INFO] <<< maven-source-plugin:2.3:jar (attach-sources) @ Trainable_Segmentation <<<
[INFO]
[INFO] --- maven-source-plugin:2.3:jar (attach-sources) @ Trainable_Segmentation ---
[WARNING] Artifact sc.fiji:Trainable_Segmentation:java-source:sources:2.1.1 already attached to project, ignoring duplicate
[INFO]
[INFO] --- maven-javadoc-plugin:2.9.1:jar (attach-javadocs) @ Trainable_Segmentation ---
[INFO]
Loading source files for package hr.irb.fastRandomForest...
Loading source files for package ai...
Loading source files for package trainableSegmentation...
Loading source files for package trainableSegmentation.filters...
Loading source files for package trainableSegmentation.metrics...
Loading source files for package trainableSegmentation.utils...
Constructing Javadoc information...
Standard Doclet version 1.6.0_45
Building tree for all the packages and classes...
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18 warnings
[WARNING] Javadoc Warnings
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/FeatureStack.java:719: warning - @param argument "originalImage" is not a parameter name.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/FeatureStack.java:719: warning - @param argument "blurRadius" is not a parameter name.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/FeatureStack.java:719: warning - @param argument "minRadius" is not a parameter name.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/FeatureStack.java:719: warning - @return tag cannot be used in method with void return type.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/FeatureStack.java:1586: warning - @return tag cannot be used in method with void return type.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/FeatureStack.java:1675: warning - @return tag cannot be used in method with void return type.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/FeatureStack.java:1773: warning - @return tag cannot be used in method with void return type.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/FeatureStack.java:2274: warning - @return tag cannot be used in method with void return type.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/FeatureStack3D.java:1027: warning - @return tag has no arguments.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/FeatureStackArray.java:366: warning - @return tag has no arguments.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/Trainable_Segmentation.java:1139: warning - @param argument "prob" is not a parameter name.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/WekaSegmentation.java:1718: warning - Parameter "mask" is documented more than once.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/WekaSegmentation.java:4828: warning - @param argument "list" is not a parameter name.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/WekaSegmentation.java:5827: warning - @param argument "udpateFeatures" is not a parameter name.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/filters/Entropy_Filter.java:125: warning - @param argument "numBin" is not a parameter name.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/metrics/WarpingError.java:513: warning - @param argument "verbose" is not a parameter name.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/metrics/WarpingError.java:871: warning - @param argument "verbose" is not a parameter name.
[WARNING] /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/src/main/java/trainableSegmentation/utils/Utils.java:208: warning - @param argument "tcurve" is not a parameter name.
[INFO] Fixed Javadoc frame injection vulnerability (CVE-2013-1571) in 1 files.
[INFO] Building jar: /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/target/Trainable_Segmentation-2.1.1-javadoc.jar
[INFO]
[INFO] --- maven-jar-plugin:2.5:test-jar (default) @ Trainable_Segmentation ---
[INFO] Building jar: /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/target/Trainable_Segmentation-2.1.1-tests.jar
[INFO]
[INFO] --- maven-install-plugin:2.5.1:install (default-install) @ Trainable_Segmentation ---
[INFO] Installing /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/target/Trainable_Segmentation-2.1.1.jar to /var/lib/jenkins/.m2/repository/sc/fiji/Trainable_Segmentation/2.1.1/Trainable_Segmentation-2.1.1.jar
[INFO] Installing /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/pom.xml to /var/lib/jenkins/.m2/repository/sc/fiji/Trainable_Segmentation/2.1.1/Trainable_Segmentation-2.1.1.pom
[INFO] Installing /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/target/Trainable_Segmentation-2.1.1-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/Trainable_Segmentation/2.1.1/Trainable_Segmentation-2.1.1-sources.jar
[INFO] Installing /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/target/Trainable_Segmentation-2.1.1-javadoc.jar to /var/lib/jenkins/.m2/repository/sc/fiji/Trainable_Segmentation/2.1.1/Trainable_Segmentation-2.1.1-javadoc.jar
[INFO] Installing /data/devel/jenkins/jobs/Trainable_Segmentation/workspace/target/Trainable_Segmentation-2.1.1-tests.jar to /var/lib/jenkins/.m2/repository/sc/fiji/Trainable_Segmentation/2.1.1/Trainable_Segmentation-2.1.1-tests.jar
[INFO]
[INFO] --- imagej-maven-plugin:0.5.4:copy-jars (copy-jars) @ Trainable_Segmentation ---
[INFO] Property 'imagej.app.directory' unset; Skipping copy-jars
[INFO]
[INFO] --- maven-deploy-plugin:2.8.1:deploy (default-deploy) @ Trainable_Segmentation ---
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 19.099s
[INFO] Finished at: Fri Nov 07 09:41:04 CST 2014
[INFO] Final Memory: 36M/542M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-deploy-plugin:2.8.1:deploy (default-deploy) on project Trainable_Segmentation: Deployment failed: repository element was not specified in the POM inside distributionManagement element or in -DaltDeploymentRepository=id::layout::url parameter -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
Build step 'Execute shell' marked build as failure
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