[ImageJ-builds] Build failed in Jenkins: Fiji-daily #1303
jenkins at imagej.net
jenkins at imagej.net
Fri Nov 7 00:28:12 CST 2014
See <http://jenkins.imagej.net/job/Fiji-daily/1303/changes>
Changes:
[Curtis Rueden] Remove obsolete dependencies
[Curtis Rueden] POM: tweak repositories comment
[Curtis Rueden] POM: bump to pom-fiji 5.0.2
[Curtis Rueden] POM: add artifacts migrated from fiji-compat
------------------------------------------
[...truncated 22248 lines...]
at org.scijava.minimaven.MavenProject.download(MavenProject.java:176)
at org.scijava.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:1160)
at org.scijava.minimaven.MavenProject.findPOM(MavenProject.java:1108)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:813)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:822)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:774)
at org.scijava.minimaven.MavenProject.buildAndInstall(MavenProject.java:339)
at org.scijava.minimaven.MavenProject.buildAndInstall(MavenProject.java:298)
at org.scijava.minimaven.MiniMaven.main(MiniMaven.java:139)
Trying to download http://maven.imagej.net/content/repositories/releases/sc/fiji/AnalyzeSkeleton_/2.0.0-rc-17/AnalyzeSkeleton_-2.0.0-rc-17.pom.sha1
java.io.FileNotFoundException: http://maven.imagej.net/content/repositories/releases/sc/fiji/AnalyzeSkeleton_/2.0.0-rc-17/AnalyzeSkeleton_-2.0.0-rc-17.pom.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at org.scijava.minimaven.BuildEnvironment.download(BuildEnvironment.java:506)
at org.scijava.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:376)
at org.scijava.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:369)
at org.scijava.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:363)
at org.scijava.minimaven.MavenProject.download(MavenProject.java:176)
at org.scijava.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:1160)
at org.scijava.minimaven.MavenProject.findPOM(MavenProject.java:1108)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:813)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:822)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:774)
at org.scijava.minimaven.MavenProject.buildAndInstall(MavenProject.java:339)
at org.scijava.minimaven.MavenProject.buildAndInstall(MavenProject.java:298)
at org.scijava.minimaven.MiniMaven.main(MiniMaven.java:139)
Trying to download http://maven.imagej.net/content/repositories/snapshots/sc/fiji/AnalyzeSkeleton_/2.0.0-rc-17/AnalyzeSkeleton_-2.0.0-rc-17.pom.sha1
java.io.FileNotFoundException: http://maven.imagej.net/content/repositories/snapshots/sc/fiji/AnalyzeSkeleton_/2.0.0-rc-17/AnalyzeSkeleton_-2.0.0-rc-17.pom.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at org.scijava.minimaven.BuildEnvironment.download(BuildEnvironment.java:506)
at org.scijava.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:376)
at org.scijava.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:369)
at org.scijava.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:363)
at org.scijava.minimaven.MavenProject.download(MavenProject.java:176)
at org.scijava.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:1160)
at org.scijava.minimaven.MavenProject.findPOM(MavenProject.java:1108)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:813)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:822)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:774)
at org.scijava.minimaven.MavenProject.buildAndInstall(MavenProject.java:339)
at org.scijava.minimaven.MavenProject.buildAndInstall(MavenProject.java:298)
at org.scijava.minimaven.MiniMaven.main(MiniMaven.java:139)
Trying to download http://maven.imagej.net/service/local/repo_groups/public/content//sc/fiji/AnalyzeSkeleton_/2.0.0-rc-17/AnalyzeSkeleton_-2.0.0-rc-17.pom.sha1
java.io.FileNotFoundException: http://maven.imagej.net/service/local/repo_groups/public/content//sc/fiji/AnalyzeSkeleton_/2.0.0-rc-17/AnalyzeSkeleton_-2.0.0-rc-17.pom.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at org.scijava.minimaven.BuildEnvironment.download(BuildEnvironment.java:506)
at org.scijava.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:376)
at org.scijava.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:369)
at org.scijava.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:363)
at org.scijava.minimaven.MavenProject.download(MavenProject.java:176)
at org.scijava.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:1160)
at org.scijava.minimaven.MavenProject.findPOM(MavenProject.java:1108)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:813)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:822)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:774)
at org.scijava.minimaven.MavenProject.buildAndInstall(MavenProject.java:339)
at org.scijava.minimaven.MavenProject.buildAndInstall(MavenProject.java:298)
at org.scijava.minimaven.MiniMaven.main(MiniMaven.java:139)
Trying to download http://repo1.maven.org/maven2//sc/fiji/AnalyzeSkeleton_/2.0.0-rc-17/AnalyzeSkeleton_-2.0.0-rc-17.pom.sha1
java.io.FileNotFoundException: http://repo1.maven.org/maven2//sc/fiji/AnalyzeSkeleton_/2.0.0-rc-17/AnalyzeSkeleton_-2.0.0-rc-17.pom.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at org.scijava.minimaven.BuildEnvironment.download(BuildEnvironment.java:506)
at org.scijava.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:376)
at org.scijava.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:369)
at org.scijava.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:363)
at org.scijava.minimaven.MavenProject.download(MavenProject.java:176)
at org.scijava.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:1160)
at org.scijava.minimaven.MavenProject.findPOM(MavenProject.java:1108)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:813)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:822)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:774)
at org.scijava.minimaven.MavenProject.buildAndInstall(MavenProject.java:339)
at org.scijava.minimaven.MavenProject.buildAndInstall(MavenProject.java:298)
at org.scijava.minimaven.MiniMaven.main(MiniMaven.java:139)
java.io.FileNotFoundException: Could not download AnalyzeSkeleton_-2.0.0-rc-17.jar
at org.scijava.minimaven.MavenProject.download(MavenProject.java:182)
at org.scijava.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:1160)
at org.scijava.minimaven.MavenProject.findPOM(MavenProject.java:1108)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:813)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:822)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:774)
at org.scijava.minimaven.MavenProject.buildAndInstall(MavenProject.java:339)
at org.scijava.minimaven.MavenProject.buildAndInstall(MavenProject.java:298)
at org.scijava.minimaven.MiniMaven.main(MiniMaven.java:139)
Could not download AnalyzeSkeleton_: Could not download AnalyzeSkeleton_-2.0.0-rc-17.jar
Parsing /data/devel/jenkins/.m2/repository/sc/fiji/Volume_Viewer/2.01/Volume_Viewer-2.01.pom
Skipping invalid dependency (version unset): sc.fiji/blockmatching_-null
Parsing /data/devel/jenkins/.m2/repository/sc/fiji/panorama_/2.0.0/panorama_-2.0.0.pom
Parsing /data/devel/jenkins/.m2/repository/mpicbg/mpicbg_/0.6.1/mpicbg_-0.6.1.pom
Parsing /data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.pom
Skipping invalid dependency (version unset): sc.fiji/register_virtual_stack_slices-null
Parsing /data/devel/jenkins/.m2/repository/sc/fiji/registration_3d/2.0.0/registration_3d-2.0.0.pom
Parsing /data/devel/jenkins/.m2/repository/sc/fiji/PIV_analyser/1.1/PIV_analyser-1.1.pom
Skipping invalid dependency (version unset): sc.fiji/SPIM_Registration-null
Skipping invalid dependency (version unset): sc.fiji/Stitching_-null
Skipping invalid dependency (version unset): net.imglib2/imglib2-algorithms-null
Skipping invalid dependency (version unset): net.imglib2/imglib2-algorithms-null
Skipping invalid dependency (version unset): sc.fiji/Trainable_Segmentation-null
Skipping artifact sc.fiji:Arrow_:2.0.1 (for sc.fiji:fiji:2.0.0-beta-1-SNAPSHOT): not found
Skipping artifact sc.fiji:3D_Blob_Segmentation:2.0.1 (for sc.fiji:fiji:2.0.0-beta-1-SNAPSHOT): not found
Skipping artifact sc.fiji:Archipelago_Plugins:0.5.0 (for sc.fiji:fiji:2.0.0-beta-1-SNAPSHOT): not found
Skipping artifact sc.fiji:Bug_Submitter:2.0.1 (for sc.fiji:fiji:2.0.0-beta-1-SNAPSHOT): not found
Skipping invalid dependency (version unset): sc.fiji/Descriptor_based_registration-null
Skipping invalid dependency (version unset): sc.fiji/FS_Align_TrakEM2-null
Skipping artifact sc.fiji:FeatureJ_:1.6.1 (for sc.fiji:fiji:2.0.0-beta-1-SNAPSHOT): not found
Skipping invalid dependency (version unset): sc.fiji/Feature_Detection-null
Skipping artifact sc.fiji:Fiji_Developer:2.0.1 (for sc.fiji:fiji:2.0.0-beta-1-SNAPSHOT): not found
Skipping artifact sc.fiji:Fiji_Package_Maker:2.0.1 (for sc.fiji:fiji:2.0.0-beta-1-SNAPSHOT): not found
Skipping invalid dependency (version unset): sc.fiji/Graph_Cut-null
Skipping artifact sc.fiji:MTrackJ_:1.5.1 (for sc.fiji:fiji:2.0.0-beta-1-SNAPSHOT): not found
Skipping artifact sc.fiji:RandomJ_:1.5.1 (for sc.fiji:fiji:2.0.0-beta-1-SNAPSHOT): not found
Skipping invalid dependency (version unset): sc.fiji/Reconstruct_Reader-null
Skipping artifact sc.fiji:Simple_Neurite_Tracer:2.0.2 (for sc.fiji:fiji:2.0.0-beta-1-SNAPSHOT): not found
Skipping artifact sc.fiji:Stack_Manipulation:2.0.1 (for sc.fiji:fiji:2.0.0-beta-1-SNAPSHOT): not found
Skipping artifact sc.fiji:Time_Lapse:2.0.1 (for sc.fiji:fiji:2.0.0-beta-1-SNAPSHOT): not found
Skipping invalid dependency (version unset): sc.fiji/TrakEM2_-null
Skipping invalid dependency (version unset): sc.fiji/TrakEM2_Archipelago-null
Skipping artifact sc.fiji:TransformJ_:2.8.1 (for sc.fiji:fiji:2.0.0-beta-1-SNAPSHOT): not found
Skipping invalid dependency (version unset): sc.fiji/blockmatching_-null
Skipping invalid dependency (version unset): sc.fiji/register_virtual_stack_slices-null
Warning: deleting '/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/ij-1.48s.jar'
Warning: deleting '/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/jama-1.0.3.jar'
Warning: deleting '/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/jcodings-1.0.8.jar'
Warning: deleting '/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/jnr-constants-0.8.4.jar'
Warning: deleting '/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/jnr-ffi-1.0.4.jar'
Warning: deleting '/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/joda-time-2.2.jar'
+ update_launcher
+ uptodate /data/devel/jenkins/jobs/Fiji-daily/workspace/./Build.sh /data/devel/jenkins/jobs/Fiji-daily/workspace/ImageJ-linux64
+ test -s /data/devel/jenkins/jobs/Fiji-daily/workspace/ImageJ-linux64
+ cd /data/devel/jenkins/jobs/Fiji-daily/workspace
+ sh -ax bin/download-launchers.sh release linux64
+ set -e
+ unset CDPATH
+ dirname bin/download-launchers.sh
+ cd bin/..
+ mode=releases
+ platform=linux64
+ groupId=net/imagej
+ artifactId=imagej-launcher
+ baseurl=http://maven.imagej.net/service/local/repositories/sonatype/content/net/imagej/imagej-launcher
+ curl http://maven.imagej.net/service/local/repositories/sonatype/content/net/imagej/imagej-launcher/maven-metadata.xml
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 673 100 673 0 0 59578 0 --:--:-- --:--:-- --:--:-- 84125
+ metadata=<?xml version="1.0" encoding="UTF-8"?>
<metadata>
<groupId>net.imagej</groupId>
<artifactId>imagej-launcher</artifactId>
<versioning>
<latest>3.2.0</latest>
<release>3.2.0</release>
<versions>
<version>3.0.0</version>
<version>3.0.1</version>
<version>3.0.2</version>
<version>3.1.0</version>
<version>3.1.1</version>
<version>3.1.2</version>
<version>3.1.3</version>
<version>3.1.4</version>
<version>3.1.5</version>
<version>3.1.6</version>
<version>3.1.7</version>
<version>3.2.0</version>
</versions>
<lastUpdated>20141104223059</lastUpdated>
</versioning>
</metadata>
+ get version
+ echo <?xml version="1.0" encoding="UTF-8"?>
<metadata>
<groupId>net.imagej</groupId>
<artifactId>imagej-launcher</artifactId>
<versioning>
<latest>3.2.0</latest>
<release>3.2.0</release>
<versions>
<version>3.0.0</version>
<version>3.0.1</version>
<version>3.0.2</version>
<version>3.1.0</version>
<version>3.1.1</version>
<version>3.1.2</version>
<version>3.1.3</version>
<version>3.1.4</version>
<version>3.1.5</version>
<version>3.1.6</version>
<version>3.1.7</version>
<version>3.2.0</version>
</versions>
<lastUpdated>20141104223059</lastUpdated>
</versioning>
</metadata>
+ sed -n s/.*<version>\(.*\)<\/version>.*/\1/p
+ tail -n 1
+ version=3.2.0
+ baseurl=http://maven.imagej.net/service/local/repositories/sonatype/content/net/imagej/imagej-launcher/3.2.0
+ basename=imagej-launcher-3.2.0
+ tmpdir=.tmp.18070
+ mkdir .tmp.18070
+ curl http://maven.imagej.net/service/local/repositories/sonatype/content/net/imagej/imagej-launcher/3.2.0/imagej-launcher-3.2.0.nar
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 22910 100 22910 0 0 2103k 0 --:--:-- --:--:-- --:--:-- 2796k
+ test -z linux64
+ download_platform linux64
+ download amd64-Linux ImageJ-linux64
+ exe=
+ curl http://maven.imagej.net/service/local/repositories/sonatype/content/net/imagej/imagej-launcher/3.2.0/imagej-launcher-3.2.0-amd64-Linux-gcc-executable.nar
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 34158 100 34158 0 0 1296k 0 --:--:-- --:--:-- --:--:-- 1450k
+ unzip -p .tmp.18070/amd64-Linux.zip bin/amd64-Linux-gcc/imagej-launcher
+ chmod a+x ImageJ-linux64
+ echo ImageJ-linux64
+ sed s/ImageJ-/fiji-/
+ fiji=fiji-linux64
+ cp ImageJ-linux64 fiji-linux64
+ test ! -z linux64
+ cp ImageJ-linux64 ImageJ
+ cp fiji-linux64 fiji
+ rm -rf .tmp.18070
+ test -z fiji-linux64
+ test ! -f /data/devel/jenkins/jobs/Fiji-daily/workspace/fiji-linux64
+ rm /data/devel/jenkins/jobs/Fiji-daily/workspace/fiji-linux64
+ uptodate ImageJ-linux64 fiji
+ test -s fiji
+ test fiji -nt ImageJ-linux64
+ cp ImageJ-linux64 fiji
+ uptodate ImageJ-linux64 ImageJ
+ test -s ImageJ
+ test ImageJ -nt ImageJ-linux64
+ cp ImageJ-linux64 ImageJ
+ java -Dij.dir=. -classpath plugins/*:jars/* fiji.packaging.Packager fiji-nojre.tar
Exception in thread "main" java.lang.NoClassDefFoundError: fiji/packaging/Packager
Caused by: java.lang.ClassNotFoundException: fiji.packaging.Packager
at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301)
at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
Could not find the main class: fiji.packaging.Packager. Program will exit.
Build step 'Execute shell' marked build as failure
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