[ImageJ-builds] Build failed in Jenkins: cookbook #8
jenkins at imagej.net
jenkins at imagej.net
Thu Nov 6 16:07:30 CST 2014
See <http://jenkins.imagej.net/job/cookbook/8/changes>
Changes:
[Curtis Rueden] Flatten the cookbook project
[Curtis Rueden] POM: tidy up order of configuration blocks
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Downloaded: http://maven.imagej.net/content/groups/public/sc/fiji/bij/0.1.0/bij-0.1.0.jar (345 KB at 4649.9 KB/sec)
[INFO]
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-rules) @ cookbook_ ---
[INFO] Adding ignorable dependency: null:jcodings:null
[INFO] Adding ignore: org/jcodings/*
[INFO] Adding ignorable dependency: null:jnr-constants:null
[INFO] Adding ignore: com/kenai/constantine/*
[INFO] Adding ignore: jnr/constants/*
[INFO] Adding ignorable dependency: null:jnr-ffi:null
[INFO] Adding ignore: jnr/ffi/*
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ cookbook_ ---
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/cookbook/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/cookbook/workspace
[INFO] Storing buildNumber: 44175cf9f6aede519784444f2dae15f3900d1a07 at timestamp: 1415311643706
[WARNING] Cannot get the branch information from the git repository:
Detecting the current branch failed: fatal: ref HEAD is not a symbolic ref
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/cookbook/workspace && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/cookbook/workspace
[INFO] Storing buildScmBranch: UNKNOWN
[INFO]
[INFO] --- scijava-maven-plugin:0.2.0:set-rootdir (set-rootdir) @ cookbook_ ---
[INFO] Setting rootdir: /data/devel/jenkins/jobs/cookbook/workspace
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ cookbook_ ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO]
[INFO] --- maven-compiler-plugin:3.1:compile (default-compile) @ cookbook_ ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 31 source files to /data/devel/jenkins/jobs/cookbook/workspace/target/classes
[WARNING] Note: Some input files use or override a deprecated API.
[WARNING] Note: Recompile with -Xlint:deprecation for details.
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ cookbook_ ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/cookbook/workspace/src/test/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.1:testCompile (default-testCompile) @ cookbook_ ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.17:test (default-test) @ cookbook_ ---
[INFO] No tests to run.
[INFO]
[INFO] --- maven-jar-plugin:2.5:jar (default-jar) @ cookbook_ ---
[INFO] Building jar: /data/devel/jenkins/jobs/cookbook/workspace/target/cookbook_-1.0.0-SNAPSHOT.jar
[INFO]
[INFO] >>> maven-source-plugin:2.3:jar (default) @ cookbook_ >>>
[INFO]
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-rules) @ cookbook_ ---
[INFO] Adding ignorable dependency: null:jcodings:null
[INFO] Adding ignore: org/jcodings/*
[INFO] Adding ignorable dependency: null:jnr-constants:null
[INFO] Adding ignore: com/kenai/constantine/*
[INFO] Adding ignore: jnr/constants/*
[INFO] Adding ignorable dependency: null:jnr-ffi:null
[INFO] Adding ignore: jnr/ffi/*
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ cookbook_ ---
[INFO]
[INFO] --- scijava-maven-plugin:0.2.0:set-rootdir (set-rootdir) @ cookbook_ ---
[INFO]
[INFO] <<< maven-source-plugin:2.3:jar (default) @ cookbook_ <<<
[INFO]
[INFO] --- maven-source-plugin:2.3:jar (default) @ cookbook_ ---
[INFO] Building jar: /data/devel/jenkins/jobs/cookbook/workspace/target/cookbook_-1.0.0-SNAPSHOT-sources.jar
[INFO]
[INFO] >>> maven-source-plugin:2.3:jar (attach-sources) @ cookbook_ >>>
[INFO]
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-rules) @ cookbook_ ---
[INFO] Adding ignorable dependency: null:jcodings:null
[INFO] Adding ignore: org/jcodings/*
[INFO] Adding ignorable dependency: null:jnr-constants:null
[INFO] Adding ignore: com/kenai/constantine/*
[INFO] Adding ignore: jnr/constants/*
[INFO] Adding ignorable dependency: null:jnr-ffi:null
[INFO] Adding ignore: jnr/ffi/*
[INFO]
[INFO] --- buildnumber-maven-plugin:1.3:create (default) @ cookbook_ ---
[INFO]
[INFO] --- scijava-maven-plugin:0.2.0:set-rootdir (set-rootdir) @ cookbook_ ---
[INFO]
[INFO] <<< maven-source-plugin:2.3:jar (attach-sources) @ cookbook_ <<<
[INFO]
[INFO] --- maven-source-plugin:2.3:jar (attach-sources) @ cookbook_ ---
[WARNING] Artifact sc.fiji:cookbook_:java-source:sources:1.0.0-SNAPSHOT already attached to project, ignoring duplicate
[INFO]
[INFO] --- maven-javadoc-plugin:2.9.1:jar (attach-javadocs) @ cookbook_ ---
[INFO]
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Delta_F_up.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/SpecifyLine_.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Copy_Pixel_Size.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Diffraction_PSF_3D.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Event_Stamper.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Zoomify_.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Backprojector_.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Ratio_Profiler.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Add_Scale_Bar_.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Two_Shot_Anaglyph.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/SurfaceJ_.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Register_ROI_MI.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Specify_ROI.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Iterative_Deconvolve_3D.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Register_ROI_MI_Edges.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Colour_merge.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Register_ROI.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Stack_Interleaver.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Microscope_Scale.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Volume_Reconstructor_.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/PCA_.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/MI_.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Diffusion_.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Z_Code_Stack.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/VolumeJ_.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Cell_Counter.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/FRAP_Profiler.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Depth_Coded_Stack_.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Time_Stamper2.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Delta_F_down.java...
Loading source file /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Nucleus_Counter.java...
Constructing Javadoc information...
Standard Doclet version 1.6.0_45
Building tree for all the packages and classes...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Add_Scale_Bar_.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Backprojector_.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Cell_Counter.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Colour_merge.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Copy_Pixel_Size.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Delta_F_down.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Delta_F_up.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Depth_Coded_Stack_.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Diffraction_PSF_3D.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Diffusion_.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Event_Stamper.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/FRAP_Profiler.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Iterative_Deconvolve_3D.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/MI_.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Microscope_Scale.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Nucleus_Counter.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/PCA_.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Ratio_Profiler.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Register_ROI.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Register_ROI_MI.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Register_ROI_MI_Edges.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Specify_ROI.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/SpecifyLine_.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Stack_Interleaver.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/SurfaceJ_.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Time_Stamper2.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Two_Shot_Anaglyph.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Volume_Reconstructor_.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/VolumeJ_.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Z_Code_Stack.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/Zoomify_.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/package-frame.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/package-summary.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/package-tree.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/constant-values.html...
Building index for all the packages and classes...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/overview-tree.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/index-all.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/allclasses-frame.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/allclasses-noframe.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/index.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/help-doc.html...
Generating /data/devel/jenkins/jobs/cookbook/workspace/target/apidocs/stylesheet.css...
14 warnings
[WARNING] Javadoc Warnings
[WARNING] javadoc: warning - Error fetching URL: http://download.java.net/media/java3d/javadoc/1.5.2/package-list
[WARNING] /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Backprojector_.java:25: warning - @author: is an unknown tag.
[WARNING] /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Depth_Coded_Stack_.java:31: warning - @author: is an unknown tag.
[WARNING] /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Diffusion_.java:32: warning - @author: is an unknown tag.
[WARNING] /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/MI_.java:37: warning - @author: is an unknown tag.
[WARNING] /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/PCA_.java:37: warning - @author: is an unknown tag.
[WARNING] /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Register_ROI.java:37: warning - @author: is an unknown tag.
[WARNING] /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Register_ROI_MI.java:31: warning - @author: is an unknown tag.
[WARNING] /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Register_ROI_MI_Edges.java:32: warning - @author: is an unknown tag.
[WARNING] /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/SurfaceJ_.java:25: warning - @author: is an unknown tag.
[WARNING] /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/Volume_Reconstructor_.java:26: warning - @author: is an unknown tag.
[WARNING] /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/VolumeJ_.java:47: warning - @author: is an unknown tag.
[WARNING] /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/VolumeJ_.java:110: warning - @param argument "double" is not a parameter name.
[WARNING] /data/devel/jenkins/jobs/cookbook/workspace/src/main/java/VolumeJ_.java:110: warning - @param argument "double" is not a parameter name.
[INFO] Fixed Javadoc frame injection vulnerability (CVE-2013-1571) in 1 files.
[INFO] Building jar: /data/devel/jenkins/jobs/cookbook/workspace/target/cookbook_-1.0.0-SNAPSHOT-javadoc.jar
[INFO]
[INFO] --- maven-jar-plugin:2.5:test-jar (default) @ cookbook_ ---
[INFO] Skipping packaging of the test-jar
[INFO]
[INFO] --- maven-install-plugin:2.5.1:install (default-install) @ cookbook_ ---
[INFO] Installing /data/devel/jenkins/jobs/cookbook/workspace/target/cookbook_-1.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/cookbook_/1.0.0-SNAPSHOT/cookbook_-1.0.0-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/cookbook/workspace/pom.xml to /var/lib/jenkins/.m2/repository/sc/fiji/cookbook_/1.0.0-SNAPSHOT/cookbook_-1.0.0-SNAPSHOT.pom
[INFO] Installing /data/devel/jenkins/jobs/cookbook/workspace/target/cookbook_-1.0.0-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/cookbook_/1.0.0-SNAPSHOT/cookbook_-1.0.0-SNAPSHOT-sources.jar
[INFO] Installing /data/devel/jenkins/jobs/cookbook/workspace/target/cookbook_-1.0.0-SNAPSHOT-javadoc.jar to /var/lib/jenkins/.m2/repository/sc/fiji/cookbook_/1.0.0-SNAPSHOT/cookbook_-1.0.0-SNAPSHOT-javadoc.jar
[INFO]
[INFO] --- imagej-maven-plugin:0.5.4:copy-jars (copy-jars) @ cookbook_ ---
[INFO] Property 'imagej.app.directory' unset; Skipping copy-jars
[INFO]
[INFO] --- maven-deploy-plugin:2.8.1:deploy (default-deploy) @ cookbook_ ---
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 9.423s
[INFO] Finished at: Thu Nov 06 16:07:30 CST 2014
[INFO] Final Memory: 25M/449M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-deploy-plugin:2.8.1:deploy (default-deploy) on project cookbook_: Deployment failed: repository element was not specified in the POM inside distributionManagement element or in -DaltDeploymentRepository=id::layout::url parameter -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
Build step 'Execute shell' marked build as failure
Archiving artifacts
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