[ImageJ-builds] Build failed in Jenkins: Fiji-minimal-MacOSX #774
jenkins at imagej.net
jenkins at imagej.net
Thu May 22 17:53:48 CDT 2014
See <http://jenkins.imagej.net/job/Fiji-minimal-MacOSX/774/>
------------------------------------------
Started by user Johannes Schindelin
Building remotely on MacOSX (macosx) in workspace <http://jenkins.imagej.net/job/Fiji-minimal-MacOSX/ws/>
[Fiji-minimal-MacOSX] $ /bin/sh -xe /var/folders/-L/-LbO4IejFYmNm+kvpsPnXk+++TM/-Tmp-/hudson2341285383694654444.sh
+ test -d .git
+ git fetch -k
+ git clean -df
Removing Contents/MacOS/
Removing jars/Updater_Fix-2.0.0-SNAPSHOT.jar
Removing jars/asm-4.0.jar
Removing jars/bio-formats-4.4.10.jar
Removing jars/commons-math-3.0-SNAPSHOT.jar
Removing jars/gentyref-1.1.0.jar
Removing jars/hamcrest-core-1.1.jar
Removing jars/ij-io-2.0.0-SNAPSHOT.jar
Removing jars/ij-launcher-2.0.0-SNAPSHOT.jar
Removing jars/ij-launcher-2.0.2.jar
Removing jars/imagej-2.0.0-beta-8.jar
Removing jars/imagej-common-0.5.1.jar
Removing jars/imagej-legacy-0.3.0.jar
Removing jars/imagej-ops-0.3.0.jar
Removing jars/imagej-plugins-commands-0.1.1.jar
Removing jars/imagej-plugins-tools-0.1.1.jar
Removing jars/imagej-plugins-uploader-ssh-0.1.1.jar
Removing jars/imagej-plugins-uploader-webdav-0.1.1.jar
Removing jars/imagej-ui-awt-0.1.1.jar
Removing jars/imagej-ui-swing-0.4.0.jar
Removing jars/imagej-updater-0.3.0.jar
Removing jars/imglib-2.0.0-SNAPSHOT.jar
Removing jars/imglib-algorithms-2.0.0-SNAPSHOT.jar
Removing jars/imglib-ij-2.0.0-SNAPSHOT.jar
Removing jars/imglib-io-2.0.0-SNAPSHOT.jar
Removing jars/imglib2-io-2.0.0-SNAPSHOT.jar
Removing jars/jcommander-1.27.jar
Removing jars/jdom-2.0.2.jar
Removing jars/jdom-contrib-1.1.3.jar
Removing jars/jgoodies-common-1.7.0.jar
Removing jars/jgoodies-forms-1.7.2.jar
Removing jars/jgrapht-jdk1.6-0.8.1.jar
Removing jars/jruby-1.6.7.2.jar
Removing jars/junit-4.10.jar
Removing jars/loci-common-4.4.10.jar
Removing jars/loci-legacy-4.5-SNAPSHOT.jar
Removing jars/minlog-1.2.jar
Removing jars/netcdf-java-4.0.41.jar
Removing jars/objenesis-1.2.jar
Removing jars/poi-loci-4.4.10.jar
Removing jars/reflectasm-1.07.jar
Removing jars/scifio-devel-4.5-SNAPSHOT.jar
Removing jars/scijava-plugins-commands-0.1.1.jar
Removing jars/scijava-plugins-text-markdown-0.1.1.jar
Removing jars/scijava-plugins-text-plain-0.1.1.jar
Removing jars/scijava-ui-awt-0.1.1.jar
Removing jars/scijava-ui-swing-0.2.0.jar
Removing jars/scripting-beanshell-0.1.1.jar
Removing jars/scripting-clojure-0.1.0.jar
Removing jars/scripting-java-0.2.0.jar
Removing jars/scripting-jruby-0.1.0.jar
Removing jars/scripting-jython-0.1.0.jar
Removing jars/sezpoz-1.9-imagej.jar
Removing jars/snakeyaml-1.6.jar
Removing jars/swing-checkbox-tree-1.0.0.jar
Removing jars/testng-6.8.jar
Removing jars/xercesImpl-2.6.2.jar
Removing modules/AutoComplete/
Removing modules/ImageJA/
Removing modules/RSyntaxTextArea/
Removing modules/Retrotranslator/
Removing modules/batik/
Removing modules/bio-formats/
Removing modules/clojure/
Removing modules/commons-math/
Removing modules/image5d/
Removing modules/imagej2/
Removing modules/javassist/
Removing modules/jsch/
Removing modules/junit/
Removing modules/jython/
Removing modules/scijava-common/
Removing modules/tcljava/
Removing modules/weka/
Removing out.txt
Removing plugins/Action_Bar-2.0.0-SNAPSHOT.jar
Removing plugins/Algorithm_Launcher-2.0.0-SNAPSHOT.jar
Removing plugins/LSM_Reader-4.0h-SNAPSHOT.jar
Removing plugins/LSM_Toolbox-4.0h-SNAPSHOT.jar
Removing plugins/loci_plugins-4.4.10.jar
Removing src-plugins/3D_Blob_Segmentation/
Removing src-plugins/3D_Objects_Counter/
Removing src-plugins/3D_Viewer/
Removing src-plugins/Action_Bar/
Removing src-plugins/Algorithm_Launcher/
Removing src-plugins/AnalyzeSkeleton_/
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Removing src-plugins/Arrow_/
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Removing src-plugins/BeanShell_Interpreter/
Removing src-plugins/Bug_Submitter/
Removing src-plugins/CLI_/
Removing src-plugins/CPU_Meter/
Removing src-plugins/Calculator_Plus/
Removing src-plugins/Clojure_Interpreter/
Removing src-plugins/Colocalisation_Analysis/
Removing src-plugins/Color_Histogram/
Removing src-plugins/Color_Inspector_3D/
Removing src-plugins/Colour_Deconvolution/
Removing src-plugins/CorrectBleach_/
Removing src-plugins/Descriptor_based_registration/
Removing src-plugins/Dichromacy_/
Removing src-plugins/Differentials_/
Removing src-plugins/Directionality_/
Removing src-plugins/Extended_Depth_Field/
Removing src-plugins/FS_Align_TrakEM2/
Removing src-plugins/FeatureJ_/
Removing src-plugins/Feature_Detection/
Removing src-plugins/Fiji_Archipelago/
Removing src-plugins/Fiji_Developer/
Removing src-plugins/Fiji_Package_Maker/
Removing src-plugins/Fiji_Plugins/
Removing src-plugins/Fiji_Updater/
Removing src-plugins/FlowJ_/
Removing src-plugins/Graph_Cut/
Removing src-plugins/Gray_Morphology/
Removing src-plugins/Helmholtz_Analysis/
Removing src-plugins/IJ_Robot/
Removing src-plugins/IO_/
Removing src-plugins/Image_Expression_Parser/
Removing src-plugins/Interactive_3D_Surface_Plot/
Removing src-plugins/IsoData_Classifier/
Removing src-plugins/JRuby_Interpreter/
Removing src-plugins/Jama/
Removing src-plugins/Javascript_/
Removing src-plugins/Jython_Interpreter/
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Removing src-plugins/LSM_Reader/
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Removing src-plugins/Lasso_and_Blow_Tool/
Removing src-plugins/Linear_Kuwahara/
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Removing src-plugins/M_I_P/
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Removing src-plugins/MosaicJ_/
Removing src-plugins/Multi_Kymograph/
Removing src-plugins/PIV_analyser/
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Removing src-plugins/QuickPALM_/
Removing src-plugins/RATS_/
Removing src-plugins/RandomJ_/
Removing src-plugins/Reconstruct_Reader/
Removing src-plugins/Refresh_Javas/
Removing src-plugins/SPIM_Opener/
Removing src-plugins/SPIM_Registration/
Removing src-plugins/Samples_/
Removing src-plugins/Scala_Interpreter/
Removing src-plugins/Script_Editor/
Removing src-plugins/Series_Labeler/
Removing src-plugins/SheppLogan_/
Removing src-plugins/Sholl_Analysis/
Removing src-plugins/Simple_Neurite_Tracer/
Removing src-plugins/Siox_Segmentation/
Removing src-plugins/Skeletonize3D_/
Removing src-plugins/Snakuscule_/
Removing src-plugins/SplineDeformationGenerator_/
Removing src-plugins/StackReg_/
Removing src-plugins/Stack_Manipulation/
Removing src-plugins/Statistical_Region_Merging/
Removing src-plugins/Stitching_/
Removing src-plugins/Sync_Win/
Removing src-plugins/Thread_Killer/
Removing src-plugins/Threshold_Colour/
Removing src-plugins/Time_Stamper/
Removing src-plugins/ToAST_/
Removing src-plugins/TopoJ_/
Removing src-plugins/TrackMate_/
Removing src-plugins/Trainable_Segmentation/
Removing src-plugins/TransformJ_/
Removing src-plugins/TurboReg_/
Removing src-plugins/UnwarpJ_/
Removing src-plugins/Updater_Fix/
Removing src-plugins/VIB-lib/
Removing src-plugins/VIB_/
Removing src-plugins/Vaa3d_Reader/
Removing src-plugins/Video_Editing/
Removing src-plugins/View5D_/
Removing src-plugins/Volume_Calculator/
Removing src-plugins/Volume_Viewer/
Removing src-plugins/bUnwarpJ_/
Removing src-plugins/blockmatching_/
Removing src-plugins/fake/
Removing src-plugins/fiji-compat/
Removing src-plugins/fiji-lib/
Removing src-plugins/fiji-scripting/
Removing src-plugins/imagescience/
Removing src-plugins/imageware/
Removing src-plugins/javac/
Removing src-plugins/jep/
Removing src-plugins/legacy-imglib1/
Removing src-plugins/level_sets/
Removing src-plugins/mij/
Removing src-plugins/pal-optimization/
Removing src-plugins/panorama_/
Removing src-plugins/register_virtual_stack_slices/
Removing src-plugins/registration_3d/
Removing src-plugins/wavelets/
Removing src-plugins/weave_jy2java/
+ git reset --hard origin/master
HEAD is now at 0420041 upload-bf.sh: remove slf4j-log4j from comments
+ ./Build.sh
Downloading sc.fiji:javac:1.6.0.24-ubuntu-fiji1
Downloading org.scijava:scijava-common:2.19.1
Downloading org.scijava:minimaven:2.1.1
Looking at children of pom-fiji
Skipping invalid dependency (version unset): imagej/ij-null
Skipping invalid dependency (version unset): imagej/ij-null
Skipping invalid dependency (version unset): imagej/ij-null
Skipping invalid dependency (version unset): imagej/ij-null
Exception in thread "main" java.lang.NullPointerException
at org.scijava.minimaven.MavenProject$2.coordinate(MavenProject.java:884)
at org.scijava.minimaven.MavenProject.queryDependencyManagement(MavenProject.java:921)
at org.scijava.minimaven.MavenProject.findVersion(MavenProject.java:880)
at org.scijava.minimaven.MavenProject.expand(MavenProject.java:873)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:786)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:821)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:821)
at org.scijava.minimaven.MavenProject.getDependencies(MavenProject.java:773)
at org.scijava.minimaven.MavenProject.checkUpToDate(MavenProject.java:208)
at org.scijava.minimaven.MavenProject.upToDate(MavenProject.java:193)
at org.scijava.minimaven.MavenProject.build(MavenProject.java:421)
at org.scijava.minimaven.MavenProject.build(MavenProject.java:405)
at org.scijava.minimaven.MavenProject.buildAndInstall(MavenProject.java:347)
at org.scijava.minimaven.MavenProject.buildAndInstall(MavenProject.java:342)
at org.scijava.minimaven.MavenProject.buildAndInstall(MavenProject.java:303)
at org.scijava.minimaven.MiniMaven.main(MiniMaven.java:139)
Build step 'Execute shell' marked build as failure
Archiving artifacts
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