[ImageJ-builds] Build failed in Jenkins: Fiji-daily #1047
jenkins at imagej.net
jenkins at imagej.net
Tue Mar 4 00:00:24 CST 2014
See <http://jenkins.imagej.net/job/Fiji-daily/1047/changes>
Changes:
[Johannes Schindelin] Use ij1-patcher 0.1.1 in fiji-compat
[Johannes Schindelin] Clarify the temporary nature of the hardcoded versions in fiji-compat's pom
[Johannes Schindelin] fiji-compat: override the legacy editor with the Fiji one
[Johannes Schindelin] Fix deadlock with the EDT while opening the legacy editor
[Curtis Rueden] Update to Bio-Formats 5.0.0 release
[Curtis Rueden] Include Bio-Formats in external artifacts list
[Curtis Rueden] POM: fix typo in artifact exclusion
[Curtis Rueden] gitignore: update ignore list for Bio-Formats 5
[Curtis Rueden] gitignore: update ignore list further
[Johannes Schindelin] Let Simple Neurite Tracer work with newer JUnit
[Johannes Schindelin] Simple Neurite Tracer: use Fiji's JUnit naming convention
------------------------------------------
[...truncated 18886 lines...]
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SheppLogan_/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Simple_Neurite_Tracer/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Siox_Segmentation/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Skeletonize3D_/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Snakuscule_/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SplineDeformationGenerator_/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/StackReg_/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stack_Manipulation/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Statistical_Region_Merging/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Sync_Win/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Thread_Killer/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Threshold_Colour/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Time_Stamper/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/ToAST_/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/TopoJ_/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Trainable_Segmentation/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/TransformJ_/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/TurboReg_/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/UnwarpJ_/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Updater_Fix/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Vaa3d_Reader/pom.xml
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Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-scripting/pom.xml
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Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/modules/TrakEM2/VectorString/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/modules/TrakEM2/T2-NIT/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/modules/TrakEM2/T2-TreelineGraph/pom.xml
Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/modules/mpicbg/pom.xml
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Parsing /data/devel/jenkins/jobs/Fiji-daily/workspace/modules/mpicbg/mpicbg_/pom.xml
Parsing /data/devel/jenkins/.m2/repository/org/scijava/pom-scijava/1.140/pom-scijava-1.140.pom
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
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Parsing /data/devel/jenkins/.m2/repository/net/imagej/ij/1.48r/ij-1.48r.pom
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Parsing /data/devel/jenkins/.m2/repository/sc/fiji/legacy-imglib1/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml
Parsing /data/devel/jenkins/.m2/repository/sc/fiji/legacy-imglib1/2.0.0-SNAPSHOT/legacy-imglib1-2.0.0-20140303.175159-10.pom
Trying to download http://maven.imagej.net/content/groups/public/sc/fiji/legacy-imglib1/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
Downloading http://maven.imagej.net/content/groups/public/sc/fiji/legacy-imglib1/2.0.0-SNAPSHOT/maven-metadata.xml.sha1 to /data/devel/jenkins/.m2/repository/sc/fiji/legacy-imglib1/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml.sha1
Trying to download http://maven.imagej.net/content/groups/public/sc/fiji/legacy-imglib1/2.0.0-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of legacy-imglib1
Downloading http://maven.imagej.net/content/groups/public/sc/fiji/legacy-imglib1/2.0.0-SNAPSHOT/maven-metadata.xml to /data/devel/jenkins/.m2/repository/sc/fiji/legacy-imglib1/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml
Parsing /data/devel/jenkins/.m2/repository/ome/formats-api/5.0.0/formats-api-5.0.0.pom
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Parsing /data/devel/jenkins/.m2/repository/ch/qos/logback/logback-core/1.0.9/logback-core-1.0.9.pom
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Parsing /data/devel/jenkins/.m2/repository/ch/qos/logback/logback-classic/1.0.9/logback-classic-1.0.9.pom
Skipping invalid dependency (version unset): org.slf4j/slf4j-api-null{scope=compile}
Skipping invalid dependency (version unset): org.slf4j/slf4j-api-null{scope=compile}
Parsing /data/devel/jenkins/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.pom
Parsing /data/devel/jenkins/.m2/repository/org/apache/apache/4/apache-4.pom
Parsing /data/devel/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.pom
Parsing /data/devel/jenkins/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.pom
Parsing /data/devel/jenkins/.m2/repository/ome/lwf-stubs/5.0.0/lwf-stubs-5.0.0.pom
Parsing /data/devel/jenkins/.m2/repository/ome/ome-xml/5.0.0/ome-xml-5.0.0.pom
Parsing /data/devel/jenkins/.m2/repository/org/slf4j/slf4j-api/1.7.2/slf4j-api-1.7.2.pom
Parsing /data/devel/jenkins/.m2/repository/org/slf4j/slf4j-parent/1.7.2/slf4j-parent-1.7.2.pom
Parsing /data/devel/jenkins/.m2/repository/ome/specification/5.0.0/specification-5.0.0.pom
Parsing /data/devel/jenkins/.m2/repository/junit/junit/4.8.2/junit-4.8.2.pom
Parsing /data/devel/jenkins/.m2/repository/org/testng/testng/6.8/testng-6.8.pom
Parsing /data/devel/jenkins/.m2/repository/junit/junit/4.10/junit-4.10.pom
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Parsing /data/devel/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.pom
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Parsing /data/devel/jenkins/.m2/repository/com/google/inject/guice/2.0/guice-2.0.pom
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Parsing /data/devel/jenkins/.m2/repository/ome/turbojpeg/5.0.0/turbojpeg-5.0.0.pom
Parsing /data/devel/jenkins/.m2/repository/org/scijava/native-lib-loader/2.0-SNAPSHOT/maven-metadata-snapshot.xml
Problems downloading the dependencies of legacy-imglib1
Problems downloading the dependencies of 3D_Blob_Segmentation
Exception in thread "main" java.io.IOException: Missing timestamp/build number: null, 1
at imagej.build.minimaven.SnapshotPOMHandler.parse(SnapshotPOMHandler.java:93)
at imagej.build.minimaven.SnapshotPOMHandler.parse(SnapshotPOMHandler.java:83)
at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:949)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:738)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:769)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:769)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:726)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:193)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:178)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:388)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:330)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:325)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:325)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:286)
at imagej.build.MiniMaven.main(MiniMaven.java:144)
+ update_launcher
+ uptodate /data/devel/jenkins/jobs/Fiji-daily/workspace/./Build.sh /data/devel/jenkins/jobs/Fiji-daily/workspace/ImageJ-linux64
+ test -f /data/devel/jenkins/jobs/Fiji-daily/workspace/ImageJ-linux64
+ cd /data/devel/jenkins/jobs/Fiji-daily/workspace
+ sh -ax bin/download-launchers.sh release linux64
+ set -e
+ unset CDPATH
+ dirname bin/download-launchers.sh
+ cd bin/..
+ mode=releases
+ platform=linux64
+ groupId=net/imagej
+ artifactId=ij-launcher
+ baseurl=http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher
+ curl http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/maven-metadata.xml
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 672 100 672 0 0 25424 0 --:--:-- --:--:-- --:--:-- 28000
+ metadata=<?xml version="1.0" encoding="UTF-8"?>
<metadata modelVersion="1.1.0">
<groupId>net.imagej</groupId>
<artifactId>ij-launcher</artifactId>
<versioning>
<latest>2.0.2</latest>
<release>2.0.2</release>
<versions>
<version>2.0.0-beta1</version>
<version>2.0.0-beta2</version>
<version>2.0.0-beta2.1</version>
<version>2.0.0-beta3</version>
<version>2.0.0-beta4</version>
<version>2.0.0-beta5</version>
<version>2.0.0-beta6</version>
<version>2.0.0</version>
<version>2.0.1</version>
<version>2.0.2</version>
</versions>
<lastUpdated>20140107191750</lastUpdated>
</versioning>
</metadata>
+ get version
+ echo <?xml version="1.0" encoding="UTF-8"?>
<metadata modelVersion="1.1.0">
<groupId>net.imagej</groupId>
<artifactId>ij-launcher</artifactId>
<versioning>
<latest>2.0.2</latest>
<release>2.0.2</release>
<versions>
<version>2.0.0-beta1</version>
<version>2.0.0-beta2</version>
<version>2.0.0-beta2.1</version>
<version>2.0.0-beta3</version>
<version>2.0.0-beta4</version>
<version>2.0.0-beta5</version>
<version>2.0.0-beta6</version>
<version>2.0.0</version>
<version>2.0.1</version>
<version>2.0.2</version>
</versions>
<lastUpdated>20140107191750</lastUpdated>
</versioning>
</metadata>
+ sed -n s/.*<version>\(.*\)<\/version>.*/\1/p
+ tail -n 1
+ version=2.0.2
+ baseurl=http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/2.0.2
+ basename=ij-launcher-2.0.2
+ tmpdir=.tmp.8139
+ mkdir .tmp.8139
+ curl http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/2.0.2/ij-launcher-2.0.2.nar
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 16900 100 16900 0 0 1779k 0 --:--:-- --:--:-- --:--:-- 2357k
+ test -z linux64
+ download_platform linux64
+ download amd64-Linux ImageJ-linux64
+ exe=
+ curl http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/2.0.2/ij-launcher-2.0.2-amd64-Linux-gcc-executable.nar
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 33013 100 33013 0 0 2840k 0 --:--:-- --:--:-- --:--:-- 3582k
+ unzip -p .tmp.8139/amd64-Linux.zip bin/amd64-Linux-gcc/ij-launcher
+ chmod a+x ImageJ-linux64
+ echo ImageJ-linux64
+ sed s/ImageJ-/fiji-/
+ fiji=fiji-linux64
+ cp ImageJ-linux64 fiji-linux64
+ test ! -z linux64
+ cp ImageJ-linux64 ImageJ
+ cp fiji-linux64 fiji
+ rm -rf .tmp.8139
+ test -z fiji-linux64
+ test ! -f /data/devel/jenkins/jobs/Fiji-daily/workspace/fiji-linux64
+ rm /data/devel/jenkins/jobs/Fiji-daily/workspace/fiji-linux64
+ uptodate ImageJ-linux64 fiji
+ test -f fiji
+ test fiji -nt ImageJ-linux64
+ cp ImageJ-linux64 fiji
+ uptodate ImageJ-linux64 ImageJ
+ test -f ImageJ
+ test ImageJ -nt ImageJ-linux64
+ cp ImageJ-linux64 ImageJ
+ java -Dij.dir=. -classpath plugins/*:jars/* fiji.packaging.Packager fiji-nojre.tar
Exception in thread "main" java.lang.NoClassDefFoundError: fiji/packaging/Packager
Caused by: java.lang.ClassNotFoundException: fiji.packaging.Packager
at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301)
at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
Could not find the main class: fiji.packaging.Packager. Program will exit.
Build step 'Execute shell' marked build as failure
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