[ImageJ-builds] Build failed in Jenkins: Fiji-daily #1190
jenkins at imagej.net
jenkins at imagej.net
Sat Jul 19 00:28:12 CDT 2014
See <http://jenkins.imagej.net/job/Fiji-daily/1190/changes>
Changes:
[Mark Hiner] Miji.m: add jars in subdirectories
[Mark Hiner] Miji.m convert strcat to fullfile calls
[Johannes Schindelin] Stop supporting building using GNU make already
[Johannes Schindelin] Remove an obsolete entry in .gitignore
[Johannes Schindelin] We do not build anything from submodules anymore
[Johannes Schindelin] Move the pom-fiji project into its own repository
[Johannes Schindelin] Remove the submodules
[Johannes Schindelin] MiniMaven is a regular dependency now
[Johannes Schindelin] Replace the top-level pom.xml
[Johannes Schindelin] Remove Retrotranslator
[Johannes Schindelin] Remove obsolete sources
[Johannes Schindelin] Move the JNI Example to minimal-ij1-plugin
[Johannes Schindelin] Remove the FFMPEG_IO plugin
------------------------------------------
[...truncated 35705 lines...]
+ i=28
+ test -f /tmp/precompiled.28.jar
+ i=29
+ test -f /tmp/precompiled.29.jar
+ echo /tmp/precompiled.29.jar
+ tmpfile=/tmp/precompiled.29.jar
+ curl -s http://maven.imagej.net/service/local/repo_groups/public/content/org/scijava/scijava-common//scijava-common-.jar
+ head -c 5 /tmp/precompiled.29.jar
+ test <html !=
<htm
+ head -c 2 /tmp/precompiled.29.jar
+ test PK =
<
+ tmp=
+ exit
+ test ! -f /data/devel/jenkins/jobs/Fiji-daily/workspace/jars/ij-minimaven-*.jar
+ OPTIONS=-Dimagej.app.directory="/data/devel/jenkins/jobs/Fiji-daily/workspace"
+ test 3 -gt 0
+ OPTIONS=-Dimagej.app.directory="/data/devel/jenkins/jobs/Fiji-daily/workspace" -Dminimaven.verbose=true
+ shift
+ test 2 -gt 0
+ OPTIONS=-Dimagej.app.directory="/data/devel/jenkins/jobs/Fiji-daily/workspace" -Dminimaven.verbose=true -Dminimaven.updateinterval=1
+ shift
+ test 1 -gt 0
+ shift
+ break
+ test 0 = 0
+ eval sh -ax /data/devel/jenkins/jobs/Fiji-daily/workspace/bin/ImageJ.sh --mini-maven -Dimagej.app.directory="/data/devel/jenkins/jobs/Fiji-daily/workspace" -Dminimaven.verbose=true -Dminimaven.updateinterval=1 install
+ sh -ax /data/devel/jenkins/jobs/Fiji-daily/workspace/bin/ImageJ.sh --mini-maven -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-daily/workspace -Dminimaven.verbose=true -Dminimaven.updateinterval=1 install
+ unset CDPATH
+ dirname /data/devel/jenkins/jobs/Fiji-daily/workspace/bin/ImageJ.sh
+ DIRECTORY=/data/devel/jenkins/jobs/Fiji-daily/workspace/bin
+ PATHSEPARATOR=:
+ ISWINDOWS=
+ ISCYGWIN=
+ uname -s
+ cd /data/devel/jenkins/jobs/Fiji-daily/workspace/bin
+ pwd
+ FIJI_ROOT=/data/devel/jenkins/jobs/Fiji-daily/workspace/bin
+ expr /data/devel/jenkins/jobs/Fiji-daily/workspace/bin : \(.*\)/bin
+ FIJI_ROOT=/data/devel/jenkins/jobs/Fiji-daily/workspace
+ first_java_options=
+ java_options=
+ ij_options=
+ main_class=fiji.Main
+ dashdash=f
+ dry_run=
+ needs_tools_jar=
+ CLASSPATH=
+ test 5 -gt 0
+ option=--mini-maven
+ main_class=org.scijava.minimaven.MiniMaven
+ shift
+ test 4 -gt 0
+ option=-Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-daily/workspace
+ sq_quote -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-daily/workspace
+ + echo -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-daily/workspace
sed s/[]"\'\\(){}[\!$ ;]/\\&/g
+ java_options= -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-daily/workspace
+ shift
+ test 3 -gt 0
+ option=-Dminimaven.verbose=true
+ sq_quote -Dminimaven.verbose=true
+ + echo -Dminimaven.verbose=true
sed s/[]"\'\\(){}[\!$ ;]/\\&/g
+ java_options= -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-daily/workspace -Dminimaven.verbose=true
+ shift
+ test 2 -gt 0
+ option=-Dminimaven.updateinterval=1
+ sq_quote -Dminimaven.updateinterval=1
+ + sed s/[]"\'\\(){}[\!$ ;]/\\&/g
echo -Dminimaven.updateinterval=1
+ java_options= -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-daily/workspace -Dminimaven.verbose=true -Dminimaven.updateinterval=1
+ shift
+ test 1 -gt 0
+ option=install
+ sq_quote install
+ echo install+
sed s/[]"\'\\(){}[\!$ ;]/\\&/g
+ java_options= -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-daily/workspace -Dminimaven.verbose=true -Dminimaven.updateinterval=1 install
+ shift
+ test 0 -gt 0
+ ij_options= -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-daily/workspace -Dminimaven.verbose=true -Dminimaven.updateinterval=1 install
+ java_options=
+ get_first -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-daily/workspace -Dminimaven.verbose=true -Dminimaven.updateinterval=1 install
+ echo -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-daily/workspace
+ test -z
+ add_classpath /data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar
+ test -z
+ CLASSPATH=/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar
+ add_classpath /data/devel/jenkins/jobs/Fiji-daily/workspace/jars/gentyref-1.1.0.jar
+ test -z /data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar
+ CLASSPATH=/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/gentyref-1.1.0.jar
+ add_classpath /data/devel/jenkins/jobs/Fiji-daily/workspace/jars/javac-1.6.0.24-ubuntu-fiji1.jar
+ test -z /data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/gentyref-1.1.0.jar
+ CLASSPATH=/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/gentyref-1.1.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/javac-1.6.0.24-ubuntu-fiji1.jar
+ add_classpath /data/devel/jenkins/jobs/Fiji-daily/workspace/jars/minimaven-2.1.2.jar
+ test -z /data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/gentyref-1.1.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/javac-1.6.0.24-ubuntu-fiji1.jar
+ CLASSPATH=/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/gentyref-1.1.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/javac-1.6.0.24-ubuntu-fiji1.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/minimaven-2.1.2.jar
+ add_classpath /data/devel/jenkins/jobs/Fiji-daily/workspace/jars/scijava-common-2.26.0.jar
+ test -z /data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/gentyref-1.1.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/javac-1.6.0.24-ubuntu-fiji1.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/minimaven-2.1.2.jar
+ CLASSPATH=/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/gentyref-1.1.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/javac-1.6.0.24-ubuntu-fiji1.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/minimaven-2.1.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/scijava-common-2.26.0.jar
+ add_classpath /data/devel/jenkins/jobs/Fiji-daily/workspace/plugins/*.jar
+ test -z /data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/gentyref-1.1.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/javac-1.6.0.24-ubuntu-fiji1.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/minimaven-2.1.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/scijava-common-2.26.0.jar
+ CLASSPATH=/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/gentyref-1.1.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/javac-1.6.0.24-ubuntu-fiji1.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/minimaven-2.1.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/scijava-common-2.26.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/plugins/*.jar
+ sq_quote /data/devel/jenkins/jobs/Fiji-daily/workspace
+ + sedecho s/[]"\'\\(){}[\!$ ;]/\\&/g
/data/devel/jenkins/jobs/Fiji-daily/workspace
+ FIJI_ROOT_SQ=/data/devel/jenkins/jobs/Fiji-daily/workspace
+ EXECUTABLE_NAME=/data/devel/jenkins/jobs/Fiji-daily/workspace/bin/ImageJ.sh
+ expr /data/devel/jenkins/jobs/Fiji-daily/workspace/bin/ImageJ.sh : .*/\([^/]*\)
+ EXECUTABLE_NAME=ImageJ.sh
+ EXT_OPTION=
+ uname -s
+ sq_quote /data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/gentyref-1.1.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/javac-1.6.0.24-ubuntu-fiji1.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/minimaven-2.1.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/scijava-common-2.26.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/plugins/*.jar
+ + echo /data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/gentyref-1.1.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/javac-1.6.0.24-ubuntu-fiji1.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/minimaven-2.1.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/scijava-common-2.26.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/plugins/*.jar
sed s/[]"\'\\(){}[\!$ ;]/\\&/g
+ sq_quote ImageJ.sh
+ + echo ImageJ.shsed
s/[]"\'\\(){}[\!$ ;]/\\&/g
+ sq_quote ImageJ.sh
+ echo ImageJ.sh
+ sed s/[]"\'\\(){}[\!$ ;]/\\&/g
+ cat /data/devel/jenkins/jobs/Fiji-daily/workspace/jvm.cfg
+ eval java -Dpython.cachedir.skip=true -Xincgc -XX:PermSize=128m -Dplugins.dir=/data/devel/jenkins/jobs/Fiji-daily/workspace -Djava.class.path=/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/gentyref-1.1.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/javac-1.6.0.24-ubuntu-fiji1.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/minimaven-2.1.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/scijava-common-2.26.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/plugins/*.jar -Dsun.java.command=Fiji -Dij.dir=/data/devel/jenkins/jobs/Fiji-daily/workspace -Dfiji.dir=/data/devel/jenkins/jobs/Fiji-daily/workspace -Dfiji.executable=ImageJ.sh -Dij.executable=ImageJ.sh org.scijava.minimaven.MiniMaven -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-daily/workspace -Dminimaven.verbose=true -Dminimaven.updateinterval=1 install
+ java -Dpython.cachedir.skip=true -Xincgc -XX:PermSize=128m -Dplugins.dir=/data/devel/jenkins/jobs/Fiji-daily/workspace -Djava.class.path=/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/gentyref-1.1.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/javac-1.6.0.24-ubuntu-fiji1.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/minimaven-2.1.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/jars/scijava-common-2.26.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/plugins/*.jar -Dsun.java.command=Fiji -Dij.dir=/data/devel/jenkins/jobs/Fiji-daily/workspace -Dfiji.dir=/data/devel/jenkins/jobs/Fiji-daily/workspace -Dfiji.executable=ImageJ.sh -Dij.executable=ImageJ.sh org.scijava.minimaven.MiniMaven -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-daily/workspace -Dminimaven.verbose=true -Dminimaven.updateinterval=1 install
Setting update interval to 1 minutes
Parsing pom.xml
Parsing /data/devel/jenkins/.m2/repository/sc/fiji/pom-fiji/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml
Parsing /data/devel/jenkins/.m2/repository/sc/fiji/pom-fiji/2.0.0-SNAPSHOT/pom-fiji-2.0.0-20140719.013257-343.pom
Parsing /data/devel/jenkins/.m2/repository/net/imagej/pom-imagej/2.36/pom-imagej-2.36.pom
Parsing /data/devel/jenkins/.m2/repository/org/scijava/pom-scijava/2.24/pom-scijava-2.24.pom
Looking at children of fiji
+ update_launcher
+ uptodate /data/devel/jenkins/jobs/Fiji-daily/workspace/./Build.sh /data/devel/jenkins/jobs/Fiji-daily/workspace/ImageJ-linux64
+ test -s /data/devel/jenkins/jobs/Fiji-daily/workspace/ImageJ-linux64
+ cd /data/devel/jenkins/jobs/Fiji-daily/workspace
+ sh -ax bin/download-launchers.sh release linux64
+ set -e
+ unset CDPATH
+ dirname bin/download-launchers.sh
+ cd bin/..
+ mode=releases
+ platform=linux64
+ groupId=net/imagej
+ artifactId=imagej-launcher
+ baseurl=http://maven.imagej.net/service/local/repositories/sonatype/content/net/imagej/imagej-launcher
+ curl http://maven.imagej.net/service/local/repositories/sonatype/content/net/imagej/imagej-launcher/maven-metadata.xml
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 549 100 549 0 0 51255 0 --:--:-- --:--:-- --:--:-- 68625
+ metadata=<?xml version="1.0" encoding="UTF-8"?>
<metadata>
<groupId>net.imagej</groupId>
<artifactId>imagej-launcher</artifactId>
<versioning>
<latest>3.1.4</latest>
<release>3.1.4</release>
<versions>
<version>3.0.0</version>
<version>3.0.1</version>
<version>3.0.2</version>
<version>3.1.0</version>
<version>3.1.1</version>
<version>3.1.2</version>
<version>3.1.3</version>
<version>3.1.4</version>
</versions>
<lastUpdated>20140626150314</lastUpdated>
</versioning>
</metadata>
+ get version
+ echo <?xml version="1.0" encoding="UTF-8"?>
<metadata>
<groupId>net.imagej</groupId>
<artifactId>imagej-launcher</artifactId>
<versioning>
<latest>3.1.4</latest>
<release>3.1.4</release>
<versions>
<version>3.0.0</version>
<version>3.0.1</version>
<version>3.0.2</version>
<version>3.1.0</version>
<version>3.1.1</version>
<version>3.1.2</version>
<version>3.1.3</version>
<version>3.1.4</version>
</versions>
<lastUpdated>20140626150314</lastUpdated>
</versioning>
</metadata>
+ sed -n+ s/.*<version>\(.*\)<\/version>.*/\1/p
tail -n 1
+ version=3.1.4
+ baseurl=http://maven.imagej.net/service/local/repositories/sonatype/content/net/imagej/imagej-launcher/3.1.4
+ basename=imagej-launcher-3.1.4
+ tmpdir=.tmp.18470
+ mkdir .tmp.18470
+ curl http://maven.imagej.net/service/local/repositories/sonatype/content/net/imagej/imagej-launcher/3.1.4/imagej-launcher-3.1.4.nar
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 19040 100 19040 0 0 1764k 0 --:--:-- --:--:-- --:--:-- 2324k
+ test -z linux64
+ download_platform linux64
+ download amd64-Linux ImageJ-linux64
+ exe=
+ curl http://maven.imagej.net/service/local/repositories/sonatype/content/net/imagej/imagej-launcher/3.1.4/imagej-launcher-3.1.4-amd64-Linux-gcc-executable.nar
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 34658 100 34658 0 0 1490k 0 --:--:-- --:--:-- --:--:-- 1692k
+ unzip -p .tmp.18470/amd64-Linux.zip bin/amd64-Linux-gcc/imagej-launcher
+ chmod a+x ImageJ-linux64
+ echo ImageJ-linux64
+ sed s/ImageJ-/fiji-/
+ fiji=fiji-linux64
+ cp ImageJ-linux64 fiji-linux64
+ test ! -z linux64
+ cp ImageJ-linux64 ImageJ
+ cp fiji-linux64 fiji
+ rm -rf .tmp.18470
+ test -z fiji-linux64
+ test ! -f /data/devel/jenkins/jobs/Fiji-daily/workspace/fiji-linux64
+ rm /data/devel/jenkins/jobs/Fiji-daily/workspace/fiji-linux64
+ uptodate ImageJ-linux64 fiji
+ test -s fiji
+ test fiji -nt ImageJ-linux64
+ cp ImageJ-linux64 fiji
+ uptodate ImageJ-linux64 ImageJ
+ test -s ImageJ
+ test ImageJ -nt ImageJ-linux64
+ cp ImageJ-linux64 ImageJ
+ java -Dij.dir=. -classpath plugins/*:jars/* fiji.packaging.Packager fiji-nojre.tar
Exception in thread "main" java.lang.NoClassDefFoundError: fiji/packaging/Packager
Caused by: java.lang.ClassNotFoundException: fiji.packaging.Packager
at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301)
at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
Could not find the main class: fiji.packaging.Packager. Program will exit.
Build step 'Execute shell' marked build as failure
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