[ImageJ-builds] Build failed in Jenkins: fiji-full #956
Jenkins Daemon
jenkins at qa.nest-initiative.org
Fri Jan 17 17:40:15 CST 2014
See <https://qa.nest-initiative.org/job/fiji-full/956/changes>
Changes:
[Curtis Rueden] POM: tweak whitespace
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[...truncated 322 lines...]
at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:1012)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:755)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:773)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:730)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:197)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:182)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:392)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:334)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:290)
at imagej.build.MiniMaven.main(MiniMaven.java:148)
Trying to download http://artifacts.openmicroscopy.org/artifactory/ome.releases/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://artifacts.openmicroscopy.org/artifactory/ome.releases/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at imagej.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:493)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:378)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:336)
at imagej.build.minimaven.MavenProject.download(MavenProject.java:170)
at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:1012)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:755)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:773)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:730)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:197)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:182)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:392)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:334)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:290)
at imagej.build.MiniMaven.main(MiniMaven.java:148)
Trying to download http://artifacts.openmicroscopy.org/artifactory/ome.snapshots/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://artifacts.openmicroscopy.org/artifactory/ome.snapshots/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at imagej.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:493)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:378)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:336)
at imagej.build.minimaven.MavenProject.download(MavenProject.java:170)
at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:1012)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:755)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:773)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:730)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:197)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:182)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:392)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:334)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:290)
at imagej.build.MiniMaven.main(MiniMaven.java:148)
Trying to download http://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at imagej.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:493)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:378)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:336)
at imagej.build.minimaven.MavenProject.download(MavenProject.java:170)
at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:1012)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:755)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:773)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:730)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:197)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:182)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:392)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:334)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:290)
at imagej.build.MiniMaven.main(MiniMaven.java:148)
Trying to download http://maven.imagej.net/content/groups/public/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
Downloading http://maven.imagej.net/content/groups/public/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1 to /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml.sha1
Trying to download http://maven.imagej.net/content/groups/public/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of Stitching_
Downloading http://maven.imagej.net/content/groups/public/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml to /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml
Trying to download http://maven.imagej.net/content/groups/public/sc/fiji/Stitching_/2.0.0-SNAPSHOT/Stitching_-2.0.0-20140117.223602-28.pom.sha1
Downloading http://maven.imagej.net/content/groups/public/sc/fiji/Stitching_/2.0.0-SNAPSHOT/Stitching_-2.0.0-20140117.223602-28.pom.sha1 to /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/Stitching_-2.0.0-20140117.223602-28.pom.sha1
Trying to download http://maven.imagej.net/content/groups/public/sc/fiji/Stitching_/2.0.0-SNAPSHOT/Stitching_-2.0.0-20140117.223602-28.pom
Downloading http://maven.imagej.net/content/groups/public/sc/fiji/Stitching_/2.0.0-SNAPSHOT/Stitching_-2.0.0-20140117.223602-28.pom to /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/Stitching_-2.0.0-20140117.223602-28.pom
java.io.IOException: SHA1 mismatch: /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/Stitching_-2.0.0-20140117.223602-28.pom.sha1: 1e != bf (actual SHA-1: 5abf92bf7090ff6ff2f7f24a557fc42f61a4543b)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:400)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:374)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:368)
at imagej.build.minimaven.MavenProject.download(MavenProject.java:170)
at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:1012)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:755)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:773)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:730)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:197)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:182)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:392)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:334)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:290)
at imagej.build.MiniMaven.main(MiniMaven.java:148)
Parsing /home/jenkins/.m2/repository/net/imagej/ij-core/2.0.0-beta-7.6/ij-core-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/pom-ij-core/2.0.0-beta-7.6/pom-ij-core-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/pom-imagej/2.0.0-beta-7.6/pom-imagej-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-commands/2.0.0-beta-7.6/ij-commands-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/pom-ij-plugins/2.0.0-beta-7.6/pom-ij-plugins-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-data/2.0.0-beta-7.6/ij-data-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/imglib2-ops/2.0.0-beta-23/imglib2-ops-2.0.0-beta-23.pom
Parsing /home/jenkins/.m2/repository/io/scif/scifio/0.8.2/scifio-0.8.2.pom
Parsing /home/jenkins/.m2/repository/io/scif/pom-scifio/0.8.2/pom-scifio-0.8.2.pom
Parsing /home/jenkins/.m2/repository/io/scif/jai_imageio/1.0.1/jai_imageio-1.0.1.pom
Parsing /home/jenkins/.m2/repository/org/mapdb/mapdb/0.9.7/mapdb-0.9.7.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-options/2.0.0-beta-7.6/ij-options-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-tools/2.0.0-beta-7.6/ij-tools-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-ui/2.0.0-beta-7.6/ij-ui-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-updater-core/2.0.0-beta-7.6/ij-updater-core-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/com/github/sbridges/object-inspector/object-inspector/0.1/object-inspector-0.1.pom
Parsing /home/jenkins/.m2/repository/net/iharder/base64/2.3.8/base64-2.3.8.pom
Parsing /home/jenkins/.m2/repository/org/javassist/javassist/3.16.1-GA/javassist-3.16.1-GA.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-legacy/2.0.0-beta-7.6/ij-legacy-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-util-awt/2.0.0-beta-7.6/ij-util-awt-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/pom-ij-ui-awt-swing/2.0.0-beta-7.6/pom-ij-ui-awt-swing-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/pom-ij-ui/2.0.0-beta-7.6/pom-ij-ui-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-app/2.0.0-beta-7.6/ij-app-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-scripting-beanshell/2.0.0-beta-7.6/ij-scripting-beanshell-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/pom-ij-scripting/2.0.0-beta-7.6/pom-ij-scripting-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.pom
Parsing /home/jenkins/.m2/repository/org/beanshell/beanshell/2.0b4/beanshell-2.0b4.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-scripting-clojure/2.0.0-beta-7.6/ij-scripting-clojure-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/org/clojure/clojure/1.3.0/clojure-1.3.0.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-scripting-java/2.0.0-beta-7.6/ij-scripting-java-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-minimaven/2.0.0-beta-7.6/ij-minimaven-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-scripting-javascript/2.0.0-beta-7.6/ij-scripting-javascript-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-scripting-jruby/2.0.0-beta-7.6/ij-scripting-jruby-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/org/jruby/jruby/1.6.7.2/jruby-1.6.7.2.pom
Parsing /home/jenkins/.m2/repository/org/jruby/jruby-common/1.6.7.2/jruby-common-1.6.7.2.pom
Parsing /home/jenkins/.m2/repository/org/jruby/shared/1.6.7.2/shared-1.6.7.2.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-scripting-jython/2.0.0-beta-7.6/ij-scripting-jython-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-platforms/2.0.0-beta-7.6/ij-platforms-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-text/2.0.0-beta-7.6/ij-text-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/org/apache/commons/commons-lang3/3.1/commons-lang3-3.1.pom
Parsing /home/jenkins/.m2/repository/org/markdownj/markdownj/0.3.0-1.0.2b4/markdownj-0.3.0-1.0.2b4.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-updater-ssh/2.0.0-beta-7.6/ij-updater-ssh-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/pom-ij-uploaders/2.0.0-beta-7.6/pom-ij-uploaders-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-updater-webdav/2.0.0-beta-7.6/ij-updater-webdav-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-ui-swing/2.0.0-beta-7.6/ij-ui-swing-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/pom-ij-uis/2.0.0-beta-7.6/pom-ij-uis-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-ui-common-awt/2.0.0-beta-7.6/ij-ui-common-awt-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-util-swing/2.0.0-beta-7.6/ij-util-swing-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/pom-ij-ui-swing/2.0.0-beta-7.6/pom-ij-ui-swing-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/com/miglayout/miglayout/3.7.3.1/miglayout-3.7.3.1.pom
Parsing /home/jenkins/.m2/repository/net/sourceforge/jdatepicker/jdatepicker/1.3.2/jdatepicker-1.3.2.pom
Parsing /home/jenkins/.m2/repository/org/jhotdraw/jhotdraw/7.6.0/jhotdraw-7.6.0.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-ui-swing-commands/2.0.0-beta-7.6/ij-ui-swing-commands-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-ui-swing-script-editor/2.0.0-beta-7.6/ij-ui-swing-script-editor-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/com/fifesoft/rsyntaxtextarea/2.0.4.1/rsyntaxtextarea-2.0.4.1.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-ui-swing-tools/2.0.0-beta-7.6/ij-ui-swing-tools-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/net/imagej/ij-ui-swing-updater/2.0.0-beta-7.6/ij-ui-swing-updater-2.0.0-beta-7.6.pom
Parsing /home/jenkins/.m2/repository/log4j/log4j/1.2.17/log4j-1.2.17.pom
Parsing /home/jenkins/.m2/repository/org/apache/openejb/javaee-api/5.0-2/javaee-api-5.0-2.pom
Parsing /home/jenkins/.m2/repository/org/apache/openejb/deps/3.1.1/deps-3.1.1.pom
Parsing /home/jenkins/.m2/repository/org/apache/openejb/openejb/3.1.1/openejb-3.1.1.pom
Parsing /home/jenkins/.m2/repository/org/apache/apache/5/apache-5.pom
Parsing /home/jenkins/.m2/repository/org/slf4j/slf4j-log4j12/1.7.2/slf4j-log4j12-1.7.2.pom
Parsing /home/jenkins/.m2/repository/loci/loci_plugins/4.4.10/loci_plugins-4.4.10.pom
Parsing /home/jenkins/.m2/repository/loci/bio-formats/4.4.10/bio-formats-4.4.10.pom
Parsing /home/jenkins/.m2/repository/loci/mdbtools-java/4.4.10/mdbtools-java-4.4.10.pom
Parsing /home/jenkins/.m2/repository/loci/metakit/4.4.10/metakit-4.4.10.pom
Parsing /home/jenkins/.m2/repository/loci/poi-loci/4.4.10/poi-loci-4.4.10.pom
Parsing /home/jenkins/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.pom
Parsing /home/jenkins/.m2/repository/edu/ucar/netcdf/4.0.03/netcdf-4.0.03.pom
Archipelago_Plugins not up-to-date because of Anisotropic_Diffusion_2D
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/Stitching_-2.0.0-20140117.223602-28.pom
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-20140117.223602-28/maven-metadata-snapshot.xml
Artifact Stitching_ not found
Fiji_Archipelago not up-to-date because of mpicbg
Compiling 61 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48p/ij-1.48p.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.49/jsch-0.1.49.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/target/mpicbg-0.6.1-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/MessageListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/TransceiverListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/TransceiverExceptionListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/NodeStateListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/NodeShellListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/MessageType.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/QueueListener.java,> 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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48p/ij-1.48p.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.49/jsch-0.1.49.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/target/mpicbg-0.6.1-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-20140117.223602-28/maven-metadata-snapshot.xml
Artifact Stitching_ not found
Trainable_Segmentation not up-to-date because of Anisotropic_Diffusion_2D
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-20140117.223602-28/maven-metadata-snapshot.xml
Artifact Stitching_ not found
imagescience not up-to-date because 66 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/random/PoissonGenerator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/random/BinomialGenerator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/random/Randomizer.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/random/GammaGenerator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/random/UniformGenerator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/random/RandomGenerator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/random/GaussianGenerator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/random/ExponentialGenerator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Point.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Rectangle.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Ellipse.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Shape.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Square.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Circle.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Spline.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Polygon.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Bounds.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Region.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/Formatter.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/Messenger.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/Progressor.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/VTKResource.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/Timer.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/ImageScience.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/MouseCursor.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/FMath.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/I5DResource.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/feature/Differentiator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/feature/Structure.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/feature/Statistics.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/feature/Edges.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/feature/Hessian.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/feature/Smoother.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/feature/Laplacian.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/fourier/FFT.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/color/Palette.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/color/Wave2Color.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/segment/ZeroCrosser.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/segment/Extremizer.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/segment/Thresholder.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/array/DoubleArray.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/array/IntArray.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/array/FloatArray.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/array/ByteArray.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/array/ShortArray.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/array/LongArray.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/Image.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/Dimensions.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/Coordinates.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/ByteImage.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/Aspects.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/ColorImage.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/Borders.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/Axes.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/FloatImage.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/ShortImage.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Mirror.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Turn.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Crop.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Embed.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Prefilter.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Scale.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Transform.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Rotate.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Affine.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Translate.java)>
Compiling 66 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/Image_5D/1.2.5/Image_5D-1.2.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48p/ij-1.48p.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/random/PoissonGenerator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/random/BinomialGenerator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/random/Randomizer.java,> 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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/Image_5D/1.2.5/Image_5D-1.2.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48p/ij-1.48p.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/image/Image.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-20140117.223602-28/maven-metadata-snapshot.xml
Artifact Stitching_ not found
Compiling 38 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation>
[-source, 1.5, -target, 1.5, -classpath, 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<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/ai/AttributeClassPair.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/ai/BalancedRandomForest.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/ai/BalancedRandomTree.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/ai/Splitter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/ai/GiniFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/VotesCollector.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/FastRandomForest.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/FastRfUtils.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/SplitCriteria.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/FastRfBagging.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/DataCache.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/FastRandomTree.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/Benchmark.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Anisotropic_Diffusion_2D/target/Anisotropic_Diffusion_2D-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/Image_5D/1.2.5/Image_5D-1.2.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar:/home/jenkins/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar:/home/jenkins/.m2/repository/org/apache/commons/commons-math3/3.2/commons-math3-3.2.jar:/home/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48p/ij-1.48p.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/target/imagescience-2.4.2-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-beta-23/imglib2-2.0.0-beta-23.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-algorithms/2.0.0-beta-23/imglib2-algorithms-2.0.0-beta-23.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-beta-23/imglib2-ij-2.0.0-beta-23.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-meta/2.0.0-beta-23/imglib2-meta-2.0.0-beta-23.jar:/home/jenkins/.m2/repository/com/lowagie/itext/2.1.5/itext-2.1.5.jar:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/home/jenkins/.m2/repository/loci/jai_imageio/4.4.10/jai_imageio-4.4.10.jar:/home/jenkins/.m2/repository/gov/nist/math/jama/1.0.3/jama-1.0.3.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.jar:/home/jenkins/.m2/repository/org/jfree/jcommon/1.0.17/jcommon-1.0.17.jar:/home/jenkins/.m2/repository/org/jfree/jfreechart/1.0.14/jfreechart-1.0.14.jar:/home/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/legacy-imglib1/target/legacy-imglib1-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/loci/loci-common/4.4.10/loci-common-4.4.10.jar:/home/jenkins/.m2/repository/loci/lwf-stubs/4.4.10/lwf-stubs-4.4.10.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/target/mpicbg-0.6.1-SNAPSHOT.jar>:/home/jenkins/.m2/repository/loci/ome-xml/4.4.10/ome-xml-4.4.10.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.jar:/home/jenkins/.m2/repository/loci/scifio/4.4.10/scifio-4.4.10.jar:/home/jenkins/.m2/repository/org/scijava/scijava-common/2.8.0/scijava-common-2.8.0.jar:/home/jenkins/.m2/repository/javax/servlet/servlet-api/2.5/servlet-api-2.5.jar:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.7.2/slf4j-api-1.7.2.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>:/home/jenkins/.m2/repository/edu/ucar/udunits/4.3.18/udunits-4.3.18.jar:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar:/home/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.jar:/home/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/FeatureStack.java>:69: package stitching does not exist
import stitching.FloatArray2D;
^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/FeatureStack.java>:69: package stitching does not exist
import stitching.FloatArray2D;
^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/FeatureStack.java>:2394: cannot find symbol
symbol : class FloatArray2D
location: class trainableSegmentation.FeatureStack
FloatArray2D fftImage = new FloatArray2D((float[]) originalImage.getProcessor().getPixels(),
^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/FeatureStack.java>:2394: cannot find symbol
symbol : class FloatArray2D
location: class trainableSegmentation.FeatureStack
FloatArray2D fftImage = new FloatArray2D((float[]) originalImage.getProcessor().getPixels(),
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
3 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:446)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:377)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:400)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:334)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:290)
at imagej.build.MiniMaven.main(MiniMaven.java:148)
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 672 100 672 0 0 2490 0 --:--:-- --:--:-- --:--:-- 4941
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 16900 100 16900 0 0 38368 0 --:--:-- --:--:-- --:--:-- 57288
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
97 30341 97 29472 0 0 73856 0 --:--:-- --:--:-- --:--:-- 107k
100 30341 100 30341 0 0 76016 0 --:--:-- --:--:-- --:--:-- 110k
++ uname -m
+ test i686 = x86_64
+ PLATFORM=linux
+ ./bin/make-app.py nojre linux
Error: Could not find or load main class org.python.util.jython
Build step 'Execute shell' marked build as failure
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