[ImageJ-builds] Build failed in Jenkins: fiji-full #931

[Jenkins Daemon]

See <https://qa.nest-initiative.org/job/fiji-full/931/changes>

Changes:

[Johannes Schindelin] Add a script to keep the 'TrackMate-dev' update site up-to-date

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[...truncated 204 lines...]
Parsing /home/jenkins/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.pom
Parsing /home/jenkins/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.pom
Parsing /home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/imglib2-algorithms/2.0.0-beta-22/imglib2-algorithms-2.0.0-beta-22.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/pom-imglib2-algorithms/2.0.0-beta-22/pom-imglib2-algorithms-2.0.0-beta-22.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/pom-imglib2/2.0.0-beta-22/pom-imglib2-2.0.0-beta-22.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-beta-22/imglib2-2.0.0-beta-22.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/imglib2-meta/2.0.0-beta-22/imglib2-meta-2.0.0-beta-22.pom
Parsing /home/jenkins/.m2/repository/org/scijava/scijava-common/2.7.0/scijava-common-2.7.0.pom
Parsing /home/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.pom
Parsing /home/jenkins/.m2/repository/edu/ucar/udunits/4.3.18/udunits-4.3.18.pom
Parsing /home/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-beta-22/imglib2-ij-2.0.0-beta-22.pom
Parsing /home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.pom
Parsing /home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.pom
fiji-lib not up-to-date because 27 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/ij/gui/ShapeRoiHelper.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/statistics/RoiStatistics.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/debugging/Object_Inspector.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/Debug.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/Levenshtein.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/DoubleArray.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/SplitString.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/IntArray.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/ArrayBase.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/NumberParser.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/gui/JFrameCommandFinder.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/gui/JImagePanel.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/gui/CommandFinderBase.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/gui/AbstractAnnotation.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/gui/GenericDialogPlus.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/gui/OverlayedImageCanvas.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/FloatArray.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/MenuItemHelper.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/MenuItemDiverter.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/util/TicToc.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/JNI.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/tool/ToolToggleListener.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/tool/AbstractTrackingTool.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/tool/SliceListener.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/tool/ToolWithOptions.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/tool/AbstractTool.java/home/jenkins/workspace/fiji-full/src-plugins/fiji-lib/src/main/java/fiji/tool/SliceObserver.java)>
VIB-lib not up-to-date because of fiji-lib
3D_Viewer not up-to-date because of VIB-lib
3D_Blob_Segmentation not up-to-date because of 3D_Viewer
Compiling 27 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/ij/gui/ShapeRoiHelper.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/statistics/RoiStatistics.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/debugging/Object_Inspector.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/Debug.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/Levenshtein.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/DoubleArray.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/SplitString.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/IntArray.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/ArrayBase.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/NumberParser.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/JFrameCommandFinder.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/JImagePanel.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/CommandFinderBase.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/AbstractAnnotation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/GenericDialogPlus.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/gui/OverlayedImageCanvas.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/FloatArray.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/MenuItemHelper.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/MenuItemDiverter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/util/TicToc.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/JNI.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/ToolToggleListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/AbstractTrackingTool.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/SliceListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/ToolWithOptions.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/AbstractTool.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/src/main/java/fiji/tool/SliceObserver.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
pal-optimization not up-to-date because 22 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/MultivariateMinimum.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/StochasticOSearch.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/GammaFunction.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/UnivariateMinimum.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/MultivariateFunction.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/MFWithGradient.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/MersenneTwisterFast.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/BoundsCheckedFunction.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/UrnModel.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/OrthogonalLineFunction.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/OrthogonalSearch.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/UnivariateFunction.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/MathUtils.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/LineFunction.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/ErrorFunction.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/ConjugateGradientSearch.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/GeneralizedDEOptimizer.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/NumericalDerivative.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/Binomial.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/ConjugateDirectionSearch.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/MachineAccuracy.java/home/jenkins/workspace/fiji-full/src-plugins/pal-optimization/src/main/java/pal/math/DifferentialEvolution.java)>
Compiling 22 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/classes,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/MultivariateMinimum.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/StochasticOSearch.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/GammaFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/UnivariateMinimum.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/MultivariateFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/MFWithGradient.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/MersenneTwisterFast.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/BoundsCheckedFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/UrnModel.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/OrthogonalLineFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/OrthogonalSearch.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/UnivariateFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/MathUtils.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/LineFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/ErrorFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/ConjugateGradientSearch.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/GeneralizedDEOptimizer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/NumericalDerivative.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/Binomial.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/ConjugateDirectionSearch.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/MachineAccuracy.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/src/main/java/pal/math/DifferentialEvolution.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/classes>
Compiling 180 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/video/VideoStack.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/vib/PointList.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/vib/ShowHistogram.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/vib/oldregistration/RegistrationAlgorithm.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/vib/BinaryInterpolator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/vib/edge/SphereIterators.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/vib/edge/CircleIterators.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/vib/DiffusionInterpol2.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/src/main/java/vib/app/module/TransformImages.java,> 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Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
mpicbg not up-to-date because 128 source files are not up-to-date 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cbg/src/main/java/mpicbg/ij/PaintInvertibleCoordinateTransformThread.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/ij/InteractiveMapping.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/ij/InteractiveInvertibleCoordinateTransform.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/ij/InvertibleMapping.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/util/Matrix3x3.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/util/RingBuffer.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/util/RealSum.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/util/Timer.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/util/ColorStream.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/util/DCT.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/util/Util.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/imagefeatures/FloatArray2DMOPS.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/imagefeatures/Filter.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/imagefeatures/FloatArray2DScaleOctave.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/imagefeatures/Feature.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/imagefeatures/FloatArray2DSIFT.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/imagefeatures/FloatArray2DScaleOctaveDoGDetector.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/imagefeatures/FloatArray.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/imagefeatures/FloatArray2D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/imagefeatures/ImageArrayConverter.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/imagefeatures/FloatArray2DFeatureTransform.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/InverseCoordinateTransformList.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/Spring.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/PointMatch.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/CoordinateTransform.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/Point.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/TileUtil.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/InverseBoundable.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/AffineModel1D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/PointFactory.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/InterpolatedAffineModel3D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/RigidModel2D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/SimilarityModel2D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/IllDefinedDataPointsException.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/HomographyModel2D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/TileConfiguration.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/Affine3D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/AbstractAffineModel1D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/Affine2D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/TransformMesh.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/Transforms.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/SpringMesh.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/InvertibleInterpolatedModel.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/TranslationModel2D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/InvertibleBoundable.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/InterpolatedAffineModel1D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/Boundable.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/AbstractAffineModel2D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/MovingLeastSquaresMesh.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/TranslationModel1D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/NotEnoughDataPointsException.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/CoordinateTransformMap2D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/InverseCoordinateTransformMap2D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/InterpolatedAffineModel2D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/CoordinateTransformList.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/ElasticMovingLeastSquaresMesh.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/InvertibleCoordinateTransform.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/CoordinateTransformMesh.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/IdentityModel.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/AbstractAffineModel3D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/MovingLeastSquaresTransform.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/TransformList.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/TransformMeshMap2D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/AbstractMovingLeastSquaresTransform.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/InverseCoordinateTransform.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/AffineModel3D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/ErrorStatistic.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/Affine1D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/InterpolatedModel.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/AffineModel2D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/Model.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/RigidModel3D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/PointMatchFactory.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/MovingLeastSquaresTransform2.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/TranslationModel3D.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/InvertibleCoordinateTransformList.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/InterpolatedCoordinateTransform.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/Vertex.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/AbstractModel.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/Tile.java/home/jenkins/workspace/fiji-full/modules/mpicbg/mpicbg/src/main/java/mpicbg/models/NoninvertibleModelException.java)>
legacy-imglib1 not up-to-date because of mpicbg
Compiling 128 files in <https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/src/main/java/mpicbg/ij/InverseMapping.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/src/main/java/mpicbg/ij/FeatureTransform.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/src/main/java/mpicbg/ij/TransformMeshMapping.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/src/main/java/mpicbg/ij/SIFT.java,> 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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/src/main/java/mpicbg/ij/InteractiveInvertibleCoordinateTransform.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 520 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/legacy-imglib1>
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Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 121 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer>
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using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar:/home/jenkins/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar:/home/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-beta-22/imglib2-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-algorithms/2.0.0-beta-22/imglib2-algorithms-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-beta-22/imglib2-ij-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-meta/2.0.0-beta-22/imglib2-meta-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/com/lowagie/itext/2.1.5/itext-2.1.5.jar:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/home/jenkins/.m2/repository/loci/jai_imageio/4.4.9/jai_imageio-4.4.9.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/org/jfree/jcommon/1.0.17/jcommon-1.0.17.jar:/home/jenkins/.m2/repository/org/jfree/jfreechart/1.0.14/jfreechart-1.0.14.jar:/home/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/legacy-imglib1/target/legacy-imglib1-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/loci/loci-common/4.4.9/loci-common-4.4.9.jar:/home/jenkins/.m2/repository/loci/lwf-stubs/4.4.9/lwf-stubs-4.4.9.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/target/mpicbg-0.6.1-SNAPSHOT.jar>:/home/jenkins/.m2/repository/loci/ome-xml/4.4.9/ome-xml-4.4.9.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/loci/scifio/4.4.9/scifio-4.4.9.jar:/home/jenkins/.m2/repository/org/scijava/scijava-common/2.7.0/scijava-common-2.7.0.jar:/home/jenkins/.m2/repository/javax/servlet/servlet-api/2.5/servlet-api-2.5.jar:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.7.2/slf4j-api-1.7.2.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>:/home/jenkins/.m2/repository/edu/ucar/udunits/4.3.18/udunits-4.3.18.jar:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar:/home/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
level_sets not up-to-date because 35 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/ij/LevelSet.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/ij/ImageProgressContainer.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/ij/StateContainer.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/ij/ImageContainer.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/filter/GreyScaleFilter.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/filter/MedianFilter.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/filter/Filter.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/filter/BufferedImageBuilder.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/filter/Sobel.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/filter/MorphologicalOperator.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/filter/GreyValueErosion.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/filter/Canny.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/filter/SimpleEdgeDetect.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/filter/Dilatation.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/filter/ConvolutionFilter.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/filter/SUSAN.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/filter/UnsetPixel.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/filter/Erosion.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredByteArray3D.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredIntArray3D.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/DenseFieldLevelSet.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/SparseFieldLevelSet.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/ActiveContours.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredObjectArray3D.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/BandElementCache.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/StagedAlgorithm.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/Coordinate.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/LevelSetImplementation.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/BandElement.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredDoubleArray3D.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/GeodesicActiveContour.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/FastMarchingBandElement.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/LevelSetFactory.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredArray3D.java/home/jenkins/workspace/fiji-full/src-plugins/level_sets/src/main/java/levelsets/algorithm/FastMarching.java)>
Compiling 35 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/ij/LevelSet.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/ij/ImageProgressContainer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/ij/StateContainer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/ij/ImageContainer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/GreyScaleFilter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/MedianFilter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/Filter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/BufferedImageBuilder.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/Sobel.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/MorphologicalOperator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/GreyValueErosion.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/Canny.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/SimpleEdgeDetect.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/Dilatation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/ConvolutionFilter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/SUSAN.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/UnsetPixel.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/filter/Erosion.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredByteArray3D.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredIntArray3D.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DenseFieldLevelSet.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/SparseFieldLevelSet.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/ActiveContours.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredObjectArray3D.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/BandElementCache.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/StagedAlgorithm.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/Coordinate.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/LevelSetImplementation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/BandElement.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredDoubleArray3D.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/GeodesicActiveContour.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/FastMarchingBandElement.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/LevelSetFactory.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/DeferredArray3D.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/src/main/java/levelsets/algorithm/FastMarching.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 file in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Blob_Segmentation>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Blob_Segmentation/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/target/3D_Viewer-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar:/home/jenkins/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar:/home/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-beta-22/imglib2-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-algorithms/2.0.0-beta-22/imglib2-algorithms-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-beta-22/imglib2-ij-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-meta/2.0.0-beta-22/imglib2-meta-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/com/lowagie/itext/2.1.5/itext-2.1.5.jar:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/home/jenkins/.m2/repository/loci/jai_imageio/4.4.9/jai_imageio-4.4.9.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/org/jfree/jcommon/1.0.17/jcommon-1.0.17.jar:/home/jenkins/.m2/repository/org/jfree/jfreechart/1.0.14/jfreechart-1.0.14.jar:/home/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/legacy-imglib1/target/legacy-imglib1-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/target/level_sets-1.0.1-SNAPSHOT.jar>:/home/jenkins/.m2/repository/loci/loci-common/4.4.9/loci-common-4.4.9.jar:/home/jenkins/.m2/repository/loci/lwf-stubs/4.4.9/lwf-stubs-4.4.9.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/target/mpicbg-0.6.1-SNAPSHOT.jar>:/home/jenkins/.m2/repository/loci/ome-xml/4.4.9/ome-xml-4.4.9.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/loci/scifio/4.4.9/scifio-4.4.9.jar:/home/jenkins/.m2/repository/org/scijava/scijava-common/2.7.0/scijava-common-2.7.0.jar:/home/jenkins/.m2/repository/javax/servlet/servlet-api/2.5/servlet-api-2.5.jar:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.7.2/slf4j-api-1.7.2.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>:/home/jenkins/.m2/repository/edu/ucar/udunits/4.3.18/udunits-4.3.18.jar:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar:/home/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar, -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Blob_Segmentation/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Blob_Segmentation/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Viewer/target/3D_Viewer-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar:/home/jenkins/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar:/home/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-beta-22/imglib2-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-algorithms/2.0.0-beta-22/imglib2-algorithms-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-beta-22/imglib2-ij-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-meta/2.0.0-beta-22/imglib2-meta-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/com/lowagie/itext/2.1.5/itext-2.1.5.jar:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/home/jenkins/.m2/repository/loci/jai_imageio/4.4.9/jai_imageio-4.4.9.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/org/jfree/jcommon/1.0.17/jcommon-1.0.17.jar:/home/jenkins/.m2/repository/org/jfree/jfreechart/1.0.14/jfreechart-1.0.14.jar:/home/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/legacy-imglib1/target/legacy-imglib1-2.0.0-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/level_sets/target/level_sets-1.0.1-SNAPSHOT.jar>:/home/jenkins/.m2/repository/loci/loci-common/4.4.9/loci-common-4.4.9.jar:/home/jenkins/.m2/repository/loci/lwf-stubs/4.4.9/lwf-stubs-4.4.9.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/target/mpicbg-0.6.1-SNAPSHOT.jar>:/home/jenkins/.m2/repository/loci/ome-xml/4.4.9/ome-xml-4.4.9.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/loci/scifio/4.4.9/scifio-4.4.9.jar:/home/jenkins/.m2/repository/org/scijava/scijava-common/2.7.0/scijava-common-2.7.0.jar:/home/jenkins/.m2/repository/javax/servlet/servlet-api/2.5/servlet-api-2.5.jar:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.7.2/slf4j-api-1.7.2.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>:/home/jenkins/.m2/repository/edu/ucar/udunits/4.3.18/udunits-4.3.18.jar:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar:/home/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-full/ws/jars/scijava-common-2.2.2.jar'>
3D_Objects_Counter not up-to-date because 4 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java/home/jenkins/workspace/fiji-full/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Object3D.java/home/jenkins/workspace/fiji-full/src-plugins/3D_Objects_Counter/src/main/java/_3D_objects_counter.java/home/jenkins/workspace/fiji-full/src-plugins/3D_Objects_Counter/src/main/java/_3D_OC_Options.java)>
Compiling 4 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Objects_Counter>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Objects_Counter/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Objects_Counter/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Object3D.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Objects_Counter/src/main/java/_3D_objects_counter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Objects_Counter/src/main/java/_3D_OC_Options.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Objects_Counter/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
AnalyzeSkeleton_ not up-to-date because 6 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Point.java/home/jenkins/workspace/fiji-full/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Graph.java/home/jenkins/workspace/fiji-full/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Edge.java/home/jenkins/workspace/fiji-full/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java/home/jenkins/workspace/fiji-full/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/SkeletonResult.java/home/jenkins/workspace/fiji-full/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Vertex.java)>
Compiling 6 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Point.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Graph.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Edge.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/SkeletonResult.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Vertex.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Analyze_Reader_Writer not up-to-date because 2 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Analyze_Reader_Writer/src/main/java/Analyze_Writer.java/home/jenkins/workspace/fiji-full/src-plugins/Analyze_Reader_Writer/src/main/java/Analyze_Reader.java)>
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Analyze_Reader_Writer>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Analyze_Reader_Writer/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Analyze_Reader_Writer/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Analyze_Reader_Writer/src/main/java/Analyze_Writer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Analyze_Reader_Writer/src/main/java/Analyze_Reader.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Analyze_Reader_Writer/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Anisotropic_Diffusion_2D not up-to-date because 1 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Anisotropic_Diffusion_2D/src/main/java/anisotropic_diffusion/Anisotropic_Diffusion_2D.java)>
Compiling 1 file in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Anisotropic_Diffusion_2D>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Anisotropic_Diffusion_2D/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Anisotropic_Diffusion_2D/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Anisotropic_Diffusion_2D/src/main/java/anisotropic_diffusion/Anisotropic_Diffusion_2D.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Anisotropic_Diffusion_2D/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Parsing /home/jenkins/.m2/repository/com/jcraft/jsch/0.1.49/jsch-0.1.49.pom
Parsing /home/jenkins/.m2/repository/org/apache/commons/commons-math3/3.2/commons-math3-3.2.pom
Parsing /home/jenkins/.m2/repository/org/apache/commons/commons-parent/28/commons-parent-28.pom
Parsing /home/jenkins/.m2/repository/org/apache/apache/13/apache-13.pom
Parsing /home/jenkins/.m2/repository/net/imagej/Image_5D/1.2.5/Image_5D-1.2.5.pom
Parsing /home/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.pom
Parsing /home/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.pom
Parsing /home/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.pom
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml
Skipping artifact sc.fiji:Stitching_:2.0.0-20140109.153622-27 (for sc.fiji:Trainable_Segmentation:2.0.0-SNAPSHOT): not found
Trying to download http://maven.imagej.net/content/repositories/releases/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://maven.imagej.net/content/repositories/releases/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
	at imagej.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:493)
	at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:378)
	at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:336)
	at imagej.build.minimaven.MavenProject.download(MavenProject.java:170)
	at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:1012)
	at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:947)
	at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:764)
	at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:773)
	at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:730)
	at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:197)
	at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:182)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:392)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:334)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:290)
	at imagej.build.MiniMaven.main(MiniMaven.java:148)
Trying to download http://maven.imagej.net/content/repositories/releases//sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://maven.imagej.net/content/repositories/releases//sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
	at imagej.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:493)
	at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:378)
	at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:336)
	at imagej.build.minimaven.MavenProject.download(MavenProject.java:170)
	at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:1012)
	at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:947)
	at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:764)
	at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:773)
	at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:730)
	at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:197)
	at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:182)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:392)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:334)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:290)
	at imagej.build.MiniMaven.main(MiniMaven.java:148)
Trying to download http://maven.imagej.net/content/repositories/snapshots/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1
Downloading http://maven.imagej.net/content/repositories/snapshots/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml.sha1 to /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml.sha1
Trying to download http://maven.imagej.net/content/repositories/snapshots/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of Stitching_
Downloading http://maven.imagej.net/content/repositories/snapshots/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata.xml to /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml
java.io.IOException: SHA1 mismatch: /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml.sha1: 86 != bd (actual SHA-1: bdf5458bf5a0fdcf1755c4512c7d4bf0f30fd572)
	at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:400)
	at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:336)
	at imagej.build.minimaven.MavenProject.download(MavenProject.java:170)
	at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:1012)
	at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:947)
	at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:764)
	at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:773)
	at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:730)
	at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:197)
	at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:182)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:392)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:334)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:290)
	at imagej.build.MiniMaven.main(MiniMaven.java:148)
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-20140109.153622-27/maven-metadata-snapshot.xml
Artifact Stitching_ not found
Archipelago_Plugins not up-to-date because of Anisotropic_Diffusion_2D
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml
Skipping artifact sc.fiji:Stitching_:2.0.0-20140109.153622-27 (for sc.fiji:Trainable_Segmentation:2.0.0-SNAPSHOT): not found
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-20140109.153622-27/maven-metadata-snapshot.xml
Artifact Stitching_ not found
Fiji_Archipelago not up-to-date because of mpicbg
Compiling 61 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.49/jsch-0.1.49.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/target/mpicbg-0.6.1-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/MessageListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/TransceiverListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/TransceiverExceptionListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/NodeStateListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/NodeShellListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/MessageType.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/QueueListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/ClusterStateListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/listen/ProcessListener.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/compute/ArchipelagoFuture.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/compute/QuickRunnable.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/compute/SerializableCallable.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/compute/ProcessManager.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/compute/QuickCallable.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/example/Cluster_SIFT.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/example/Equality_Example.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/example/Test_Cluster.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/example/Stress_Test.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/FijiArchipelago.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/data/ClusterMessage.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/data/Duplex.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/data/FileChunk.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/data/HeartBeat.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/data/SimpleChunk.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/data/DataChunk.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/Fiji_Archipelago.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/translation/FileBottler.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/translation/FileTranslator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/translation/PMAcknowledgingSender.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/translation/FileBottle.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/translation/Bottle.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/translation/PathSubstitutingFileTranslator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/translation/Bottler.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/server/ArchipelagoServer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/MessageXC.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/shell/SocketNodeShell.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/shell/NodeShell.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/shell/SSHNodeShell.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/shell/ssh/JSchUtility.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/shell/ssh/NodeShellUserInfo.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/shell/NodeShellParameters.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/client/ArchipelagoClient.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/node/NodeManager.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/node/ClusterNodeState.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/network/node/ClusterNode.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/ui/ClusterUI.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/ui/ArchipelagoUI.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/ui/NodeConfigurationUI.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/ui/ClusterNodeStatusUI.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/ui/RootNodeConfigDialog.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/ui/ClusterXML.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/XCErrorAdapter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/IJLogger.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/NullLogger.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/ProcessManagerCoreComparator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/EasyLogger.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/IJPopupLogger.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/InputStreamLogger.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/util/PrintStreamLogger.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/Cluster.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/src/main/java/edu/utexas/clm/archipelago/exception/ShellExecutionException.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Fiji_Archipelago/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/com/jcraft/jsch/0.1.49/jsch-0.1.49.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/target/mpicbg-0.6.1-SNAPSHOT.jar>:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml
Skipping artifact sc.fiji:Stitching_:2.0.0-20140109.153622-27 (for sc.fiji:Trainable_Segmentation:2.0.0-SNAPSHOT): not found
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-20140109.153622-27/maven-metadata-snapshot.xml
Artifact Stitching_ not found
Trainable_Segmentation not up-to-date because of Anisotropic_Diffusion_2D
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml
Skipping artifact sc.fiji:Stitching_:2.0.0-20140109.153622-27 (for sc.fiji:Trainable_Segmentation:2.0.0-SNAPSHOT): not found
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-20140109.153622-27/maven-metadata-snapshot.xml
Artifact Stitching_ not found
imagescience not up-to-date because 66 source files are not up-to-date (<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/random/PoissonGenerator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/random/BinomialGenerator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/random/Randomizer.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/random/GammaGenerator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/random/UniformGenerator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/random/RandomGenerator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/random/GaussianGenerator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/random/ExponentialGenerator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Point.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Rectangle.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Ellipse.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Shape.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Square.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Circle.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Spline.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Polygon.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Bounds.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/shape/Region.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/Formatter.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/Messenger.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/Progressor.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/VTKResource.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/Timer.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/ImageScience.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/MouseCursor.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/FMath.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/utility/I5DResource.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/feature/Differentiator.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/feature/Structure.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/feature/Statistics.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/feature/Edges.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/feature/Hessian.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/feature/Smoother.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/feature/Laplacian.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/fourier/FFT.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/color/Palette.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/color/Wave2Color.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/segment/ZeroCrosser.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/segment/Extremizer.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/segment/Thresholder.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/array/DoubleArray.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/array/IntArray.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/array/FloatArray.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/array/ByteArray.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/array/ShortArray.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/array/LongArray.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/Image.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/Dimensions.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/Coordinates.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/ByteImage.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/Aspects.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/ColorImage.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/Borders.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/Axes.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/FloatImage.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/image/ShortImage.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Mirror.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Turn.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Crop.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Embed.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Prefilter.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Scale.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Transform.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Rotate.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Affine.java/home/jenkins/workspace/fiji-full/src-plugins/imagescience/src/main/java/imagescience/transform/Translate.java)>
Compiling 66 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/Image_5D/1.2.5/Image_5D-1.2.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar,> -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/random/PoissonGenerator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/random/BinomialGenerator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/random/Randomizer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/random/GammaGenerator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/random/UniformGenerator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/random/RandomGenerator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/random/GaussianGenerator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/random/ExponentialGenerator.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/shape/Point.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/shape/Rectangle.java,> 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<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/utility/Formatter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/utility/Messenger.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/utility/Progressor.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/utility/VTKResource.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/utility/Timer.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/utility/ImageScience.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/utility/MouseCursor.java,> 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<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/transform/Affine.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/transform/Translate.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/target/classes>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/Image_5D/1.2.5/Image_5D-1.2.5.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>
Note: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/src/main/java/imagescience/image/Image.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-SNAPSHOT/maven-metadata-snapshot.xml
Skipping artifact sc.fiji:Stitching_:2.0.0-20140109.153622-27 (for sc.fiji:Trainable_Segmentation:2.0.0-SNAPSHOT): not found
Parsing /home/jenkins/.m2/repository/sc/fiji/Stitching_/2.0.0-20140109.153622-27/maven-metadata-snapshot.xml
Artifact Stitching_ not found
Compiling 38 files in <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation>
[-source, 1.5, -target, 1.5, -classpath, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Anisotropic_Diffusion_2D/target/Anisotropic_Diffusion_2D-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/Image_5D/1.2.5/Image_5D-1.2.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar:/home/jenkins/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar:/home/jenkins/.m2/repository/org/apache/commons/commons-math3/3.2/commons-math3-3.2.jar:/home/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/target/imagescience-2.4.2-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-beta-22/imglib2-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-algorithms/2.0.0-beta-22/imglib2-algorithms-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-beta-22/imglib2-ij-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-meta/2.0.0-beta-22/imglib2-meta-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/com/lowagie/itext/2.1.5/itext-2.1.5.jar:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/home/jenkins/.m2/repository/loci/jai_imageio/4.4.9/jai_imageio-4.4.9.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.jar:/home/jenkins/.m2/repository/org/jfree/jcommon/1.0.17/jcommon-1.0.17.jar:/home/jenkins/.m2/repository/org/jfree/jfreechart/1.0.14/jfreechart-1.0.14.jar:/home/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/legacy-imglib1/target/legacy-imglib1-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/loci/loci-common/4.4.9/loci-common-4.4.9.jar:/home/jenkins/.m2/repository/loci/lwf-stubs/4.4.9/lwf-stubs-4.4.9.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/target/mpicbg-0.6.1-SNAPSHOT.jar>:/home/jenkins/.m2/repository/loci/ome-xml/4.4.9/ome-xml-4.4.9.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.jar:/home/jenkins/.m2/repository/loci/scifio/4.4.9/scifio-4.4.9.jar:/home/jenkins/.m2/repository/org/scijava/scijava-common/2.7.0/scijava-common-2.7.0.jar:/home/jenkins/.m2/repository/javax/servlet/servlet-api/2.5/servlet-api-2.5.jar:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.7.2/slf4j-api-1.7.2.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>:/home/jenkins/.m2/repository/edu/ucar/udunits/4.3.18/udunits-4.3.18.jar:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar:/home/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.jar:/home/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar, -d, <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/target/classes,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/RoiListOverlay.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/FeatureStack.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/ImageOverlay.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/Trainable_Segmentation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/filters/Lipschitz_.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/filters/Kuwahara.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/filters/Entropy_Filter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/FeatureStackArray.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/WekaSegmentation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/Weka_Segmentation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/ClassificationStatistics.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/WarpingError.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/RandError.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/Metrics.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/VariationOfInformation.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/AdjustedRandError.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/WarpingResults.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/PixelError.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/metrics/ClusteredWarpingMismatches.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/FeatureStack3D.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/utils/Utils.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/utils/PrincipalComponentAnalysis.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/ai/SplitFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/ai/VotesCollector.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/ai/InformationGainFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/ai/AttributeClassPair.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/ai/BalancedRandomForest.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/ai/BalancedRandomTree.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/ai/Splitter.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/ai/GiniFunction.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/VotesCollector.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/FastRandomForest.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/FastRfUtils.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/SplitCriteria.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/FastRfBagging.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/DataCache.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/FastRandomTree.java,> <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/hr/irb/fastRandomForest/Benchmark.java]>
using the class path: <https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/target/classes>:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Anisotropic_Diffusion_2D/target/Anisotropic_Diffusion_2D-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/home/jenkins/.m2/repository/net/imagej/Image_5D/1.2.5/Image_5D-1.2.5.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar:/home/jenkins/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar:/home/jenkins/.m2/repository/org/apache/commons/commons-math3/3.2/commons-math3-3.2.jar:/home/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:/home/jenkins/.m2/repository/net/imagej/ij/1.48k/ij-1.48k.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/imagescience/target/imagescience-2.4.2-SNAPSHOT.jar>:/home/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-beta-22/imglib2-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-algorithms/2.0.0-beta-22/imglib2-algorithms-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-beta-22/imglib2-ij-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/net/imglib2/imglib2-meta/2.0.0-beta-22/imglib2-meta-2.0.0-beta-22.jar:/home/jenkins/.m2/repository/com/lowagie/itext/2.1.5/itext-2.1.5.jar:/home/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/home/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/home/jenkins/.m2/repository/loci/jai_imageio/4.4.9/jai_imageio-4.4.9.jar:/home/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/home/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.jar:/home/jenkins/.m2/repository/org/jfree/jcommon/1.0.17/jcommon-1.0.17.jar:/home/jenkins/.m2/repository/org/jfree/jfreechart/1.0.14/jfreechart-1.0.14.jar:/home/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/legacy-imglib1/target/legacy-imglib1-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/loci/loci-common/4.4.9/loci-common-4.4.9.jar:/home/jenkins/.m2/repository/loci/lwf-stubs/4.4.9/lwf-stubs-4.4.9.jar:/home/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/modules/mpicbg/mpicbg/target/mpicbg-0.6.1-SNAPSHOT.jar>:/home/jenkins/.m2/repository/loci/ome-xml/4.4.9/ome-xml-4.4.9.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar>:/home/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.jar:/home/jenkins/.m2/repository/loci/scifio/4.4.9/scifio-4.4.9.jar:/home/jenkins/.m2/repository/org/scijava/scijava-common/2.7.0/scijava-common-2.7.0.jar:/home/jenkins/.m2/repository/javax/servlet/servlet-api/2.5/servlet-api-2.5.jar:/home/jenkins/.m2/repository/org/slf4j/slf4j-api/1.7.2/slf4j-api-1.7.2.jar:<https://qa.nest-initiative.org/job/fiji-full/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar>:/home/jenkins/.m2/repository/edu/ucar/udunits/4.3.18/udunits-4.3.18.jar:/home/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar:/home/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.jar:/home/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/FeatureStack.java>:69: package stitching does not exist
import stitching.FloatArray2D;
                ^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/FeatureStack.java>:69: package stitching does not exist
import stitching.FloatArray2D;
                ^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/FeatureStack.java>:2394: cannot find symbol
symbol  : class FloatArray2D
location: class trainableSegmentation.FeatureStack
		FloatArray2D fftImage = new FloatArray2D((float[]) originalImage.getProcessor().getPixels(),
		^
<https://qa.nest-initiative.org/job/fiji-full/ws/src-plugins/Trainable_Segmentation/src/main/java/trainableSegmentation/FeatureStack.java>:2394: cannot find symbol
symbol  : class FloatArray2D
location: class trainableSegmentation.FeatureStack
		FloatArray2D fftImage = new FloatArray2D((float[]) originalImage.getProcessor().getPixels(),
		                            ^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
3 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:446)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:377)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:400)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:334)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:290)
	at imagej.build.MiniMaven.main(MiniMaven.java:148)
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100   672  100   672    0     0   2279      0 --:--:-- --:--:-- --:--:--  4480
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100 16900  100 16900    0     0  42316      0 --:--:-- --:--:-- --:--:-- 62825
100 16900  100 16900    0     0  42305      0 --:--:-- --:--:-- --:--:-- 62825
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100 30341  100 30341    0     0  58284      0 --:--:-- --:--:-- --:--:-- 77598
++ uname -m
+ test i686 = x86_64
+ PLATFORM=linux
+ ./bin/make-app.py nojre linux
Error: Could not find or load main class org.python.util.jython
Build step 'Execute shell' marked build as failure