[ImageJ-builds] Build failed in Jenkins: fiji-windows-full #513

[Jenkins Daemon]

See <https://qa.nest-initiative.org/job/fiji-windows-full/513/changes>

Changes:

[saalfeld] updated TrakEM2, merge with repo.or.cz + suboptimal but functional bugfix

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Started by remote host 144.92.48.145
Started by remote host 144.92.48.145
Building remotely on windows-7-pro-x86_64 in workspace <https://qa.nest-initiative.org/job/fiji-windows-full/ws/>
Checkout:fiji-windows-full / <https://qa.nest-initiative.org/job/fiji-windows-full/ws/> - hudson.remoting.Channel at 26b82073:windows-7-pro-x86_64
Using strategy: Default
Last Built Revision: Revision b8e73fa25a12451bb13b6903132065acb1f4288f (origin/master)
Fetching changes from 1 remote Git repository
Fetching upstream changes from origin
Commencing build of Revision c7009d81a2e258264fb8932d41343d87bf86ef91 (origin/master)
Checking out Revision c7009d81a2e258264fb8932d41343d87bf86ef91 (origin/master)
Cleaning workspace
Resetting working tree
[fiji-windows-full] $ sh -xe C:\Users\jenkins\AppData\Local\Temp\hudson1540333394097075906.sh
+ grep 'StrictHostKeyChecking no' /etc/ssh/ssh_config
    StrictHostKeyChecking no
[fiji-windows-full] $ sh -xe C:\Users\jenkins\AppData\Local\Temp\hudson8357550231162525811.sh
+ export 'PATH=/bin:/mingw/bin:/c/Program Files (x86)/Haskell/bin:/c/Program Files (x86)/Haskell Platform/2012.4.0.0/lib/extralibs/bin:/c/Program Files (x86)/Haskell Platform/2012.4.0.0/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin:/c/Program Files (x86)/Haskell Platform/2012.4.0.0/mingw/bin'
+ PATH='/bin:/mingw/bin:/c/Program Files (x86)/Haskell/bin:/c/Program Files (x86)/Haskell Platform/2012.4.0.0/lib/extralibs/bin:/c/Program Files (x86)/Haskell Platform/2012.4.0.0/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin:/c/Program Files (x86)/Haskell Platform/2012.4.0.0/mingw/bin'
+ git config --system core.autocrlf false
+ git config core.autocrlf false
+ git reset --hard
HEAD is now at c7009d8 updated TrakEM2, merge with repo.or.cz + suboptimal but functional bugfix
+ git submodule foreach 'git config core.autocrlf false'
Entering 'java/win64'
Entering 'modules/TrakEM2'
Entering 'modules/ij-plugins'
Entering 'modules/mpicbg'
+ git submodule foreach 'git reset --hard'
Entering 'java/win64'
HEAD is now at c0180d4 Mark .exe, .dll and .sh files as executable
Entering 'modules/TrakEM2'
HEAD is now at e7c35e5 Merge remote-tracking branch 'github/master'
Entering 'modules/ij-plugins'
HEAD is now at 737d659 GlassPane component for easy blocking input to windows. Described by Alexander Potochkin http://weblogs.java.net/blog/alexfromsun/archive/2007/06/_enablingdisabl_1.html.
Entering 'modules/mpicbg'
HEAD is now at a3ad439 brought back legacy spring mesh optimizer as an alternative for use in
+ git submodule init
Submodule 'java/linux' () registered for path 'java/linux'
Submodule 'java/linux-amd64' () registered for path 'java/linux-amd64'
Submodule 'java/macosx-java3d' () registered for path 'java/macosx-java3d'
Submodule 'java/win32' () registered for path 'java/win32'
Submodule 'java/win64' () registered for path 'java/win64'
Submodule 'TrakEM2' () registered for path 'modules/TrakEM2'
Submodule 'ij-plugins' () registered for path 'modules/ij-plugins'
Submodule 'mpicbg' () registered for path 'modules/mpicbg'
+ git submodule sync
Synchronizing submodule url for 'java/linux'
Synchronizing submodule url for 'java/linux-amd64'
Synchronizing submodule url for 'java/macosx-java3d'
Synchronizing submodule url for 'java/win32'
Synchronizing submodule url for 'java/win64'
Synchronizing submodule url for 'TrakEM2'
Synchronizing submodule url for 'ij-plugins'
Synchronizing submodule url for 'mpicbg'
++ git ls-files --stage
++ sed -n 's/^160000 .\{40\} 0.//p'
++ grep -v java/
+ SUBMODULES='modules/TrakEM2
modules/ij-plugins
modules/mpicbg'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/TrakEM2
Submodule 'TrakEM2' () registered for path 'modules/TrakEM2'
fatal: reference is not a tree: fd2f71216bc3c6d0640ba6c894c369f17515270a
Unable to checkout 'fd2f71216bc3c6d0640ba6c894c369f17515270a' in submodule path 'modules/TrakEM2'
Build step 'Execute shell' marked build as failure
Build step 'Groovy Postbuild' marked build as failure