[ImageJ-builds] Build failed in Jenkins: Fiji-Maven #570

Thu Sep 5 15:22:48 CDT 2013

See <http://jenkins.imagej.net/job/Fiji-Maven/570/changes>

Changes:

[Curtis Rueden] TrackMate: update to latest ImgLib2 API

[Curtis Rueden] gitignore: add more JARs

------------------------------------------
[...truncated 10509 lines...]
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Threshold_Colour/target/surefire-reports

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Threshold_Colour/target/Threshold_Colour-2.0.1-SNAPSHOT.jar
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Threshold_Colour/target/Threshold_Colour-2.0.1-SNAPSHOT-sources.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Threshold_Colour/target/Threshold_Colour-2.0.1-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/Threshold_Colour/2.0.1-SNAPSHOT/Threshold_Colour-2.0.1-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Threshold_Colour/target/Threshold_Colour-2.0.1-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/Threshold_Colour/2.0.1-SNAPSHOT/Threshold_Colour-2.0.1-SNAPSHOT-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:Threshold_Colour:2.0.1-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:Threshold_Colour:2.0.1-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:Threshold_Colour:2.0.1-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] Copying Threshold_Colour-2.0.1-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/plugins
[INFO] Dependency ij-1.48b.jar is already there; skipping
[INFO] ------------------------------------------------------------------------
[INFO] Building plugins/Time_Stamper.jar
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 1 source file to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Time_Stamper/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Time_Stamper/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Time_Stamper/target/surefire-reports

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Time_Stamper/target/Time_Stamper-2.0.0-SNAPSHOT.jar
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Time_Stamper/target/Time_Stamper-2.0.0-SNAPSHOT-sources.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Time_Stamper/target/Time_Stamper-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/Time_Stamper/2.0.0-SNAPSHOT/Time_Stamper-2.0.0-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Time_Stamper/target/Time_Stamper-2.0.0-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/Time_Stamper/2.0.0-SNAPSHOT/Time_Stamper-2.0.0-SNAPSHOT-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:Time_Stamper:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:Time_Stamper:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:Time_Stamper:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] Copying Time_Stamper-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/plugins
[INFO] Dependency ij-1.48b.jar is already there; skipping
[INFO] ------------------------------------------------------------------------
[INFO] Building plugins/ToAST_.jar
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 2 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/ToAST_/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/ToAST_/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/ToAST_/target/surefire-reports

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/ToAST_/target/ToAST_-25.0.1-SNAPSHOT.jar
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/ToAST_/target/ToAST_-25.0.1-SNAPSHOT-sources.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/ToAST_/target/ToAST_-25.0.1-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/ToAST_/25.0.1-SNAPSHOT/ToAST_-25.0.1-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/ToAST_/target/ToAST_-25.0.1-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/ToAST_/25.0.1-SNAPSHOT/ToAST_-25.0.1-SNAPSHOT-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:ToAST_:25.0.1-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:ToAST_:25.0.1-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:ToAST_:25.0.1-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] Copying ToAST_-25.0.1-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/plugins
[INFO] Dependency ij-1.48b.jar is already there; skipping
[INFO] ------------------------------------------------------------------------
[INFO] Building plugins/TopoJ_.jar
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 2 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/TopoJ_/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/TopoJ_/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/TopoJ_/target/surefire-reports

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/TopoJ_/target/TopoJ_-2.0.0-SNAPSHOT.jar
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/TopoJ_/target/TopoJ_-2.0.0-SNAPSHOT-sources.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/TopoJ_/target/TopoJ_-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/TopoJ_/2.0.0-SNAPSHOT/TopoJ_-2.0.0-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/TopoJ_/target/TopoJ_-2.0.0-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/TopoJ_/2.0.0-SNAPSHOT/TopoJ_-2.0.0-SNAPSHOT-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:TopoJ_:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:TopoJ_:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:TopoJ_:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] Copying TopoJ_-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/plugins
[INFO] Dependency jama-1.0.2.jar is already there; skipping
[INFO] Dependency ij-1.48b.jar is already there; skipping
[INFO] ------------------------------------------------------------------------
[INFO] Building plugins/TrackMate_.jar
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 59 resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 265 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/TrackMate_/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/TrackMate_/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] Compiling 16 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/TrackMate_/target/test-classes
[INFO] [surefire:test {execution: default-test}]
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/TrackMate_/target/surefire-reports

-------------------------------------------------------
 T E S T S
-------------------------------------------------------
Running fiji.plugin.trackmate.features.track.TrackDurationAnalyzerTest
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.175 sec
Running fiji.plugin.trackmate.features.track.TrackLocationAnalyzerTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.023 sec
Running fiji.plugin.trackmate.features.track.TrackBranchingAnalyzerTest
[43]
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.095 sec
Running fiji.plugin.trackmate.features.track.TrackSpeedStatisticsAnalyzerTest
Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.042 sec
Running fiji.plugin.trackmate.features.track.TrackIndexAnalyzerTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec
Running fiji.plugin.trackmate.features.spot.RadiusEstimatorTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.31 sec
Running fiji.plugin.trackmate.features.spot.BlobDescriptiveStatisticsTest
Tests run: 1, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 0.01 sec <<< FAILURE!
Running fiji.plugin.trackmate.features.edge.EdgeTimeAndLocationAnalyzerTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 sec
Running fiji.plugin.trackmate.features.edge.EdgeTargetAnalyzerTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 sec
Running fiji.plugin.trackmate.features.edge.EdgeVelocityAnalyzerTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 sec
Running fiji.plugin.trackmate.ModelTest
Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec
Running fiji.plugin.trackmate.SpotCollectionTest
Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.314 sec
Running fiji.plugin.trackmate.TrackModelTest
Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec
Running fiji.plugin.trackmate.tracking.LAPTrackerTest
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.061 sec
Running fiji.plugin.trackmate.graph.RecursiveCumSumTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec
Running fiji.plugin.trackmate.graph.SortedDepthFirstIteratorTest
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.018 sec

Results :

Failed tests:   testProcessSpot2D(fiji.plugin.trackmate.features.spot.BlobDescriptiveStatisticsTest): expected:<1000.0> but was:<0.0>

Tests run: 56, Failures: 1, Errors: 0, Skipped: 0

[INFO] ------------------------------------------------------------------------
[ERROR] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] There are test failures.

Please refer to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/TrackMate_/target/surefire-reports for the individual test results.
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 2 minutes 56 seconds
[INFO] Finished at: Thu Sep 05 15:22:48 CDT 2013
[INFO] Final Memory: 97M/429M
[INFO] ------------------------------------------------------------------------
Build step 'Invoke top-level Maven targets' marked build as failure