[ImageJ-builds] Build failed in Jenkins: fiji-windows-full #434

Fri May 24 14:16:42 CDT 2013

See <https://qa.nest-initiative.org/job/fiji-windows-full/434/changes>

Changes:

[stephan.preibisch] minInlierFactor is now adjustable via beanshell

[stephan.preibisch] made minInlierFactor float

[Johannes Schindelin] Remove obsolete updater tests

[Johannes Schindelin] Really bend over for SunOS' sh, and use `` instead of $()

[Johannes Schindelin] Unset CDPATH in the most important shell scripts

[Johannes Schindelin] legacy-imglib1: work around a Bio-Formats method going AWOL

[Johannes Schindelin] Remove some obsolete shell scripts

------------------------------------------
Started by remote host 144.92.48.145
Building remotely on windows-7-pro-x86_64 in workspace <https://qa.nest-initiative.org/job/fiji-windows-full/ws/>
Checkout:fiji-windows-full / <https://qa.nest-initiative.org/job/fiji-windows-full/ws/> - hudson.remoting.Channel at 12ca9cb:windows-7-pro-x86_64
Using strategy: Default
Last Built Revision: Revision 60629d8a44bb0b0b219d8f813dce18bf227e4b63 (origin/master)
Fetching changes from 1 remote Git repository
Fetching upstream changes from origin
Commencing build of Revision a2d93d23aed7ca0e3b2ff4223967d16cb5ba41ac (origin/master)
Checking out Revision a2d93d23aed7ca0e3b2ff4223967d16cb5ba41ac (origin/master)
Cleaning workspace
Resetting working tree
[fiji-windows-full] $ sh -xe C:\Users\jenkins\AppData\Local\Temp\hudson3750442929316075204.sh
+ grep 'StrictHostKeyChecking no' /etc/ssh/ssh_config
    StrictHostKeyChecking no
[fiji-windows-full] $ sh -xe C:\Users\jenkins\AppData\Local\Temp\hudson4319501722046981207.sh
+ export 'PATH=/bin:/mingw/bin:/c/Program Files (x86)/Haskell/bin:/c/Program Files (x86)/Haskell Platform/2012.4.0.0/lib/extralibs/bin:/c/Program Files (x86)/Haskell Platform/2012.4.0.0/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin:/c/Program Files (x86)/Haskell Platform/2012.4.0.0/mingw/bin'
+ PATH='/bin:/mingw/bin:/c/Program Files (x86)/Haskell/bin:/c/Program Files (x86)/Haskell Platform/2012.4.0.0/lib/extralibs/bin:/c/Program Files (x86)/Haskell Platform/2012.4.0.0/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin:/c/Program Files (x86)/Haskell Platform/2012.4.0.0/mingw/bin'
+ git config --system core.autocrlf false
+ git config core.autocrlf false
+ git reset --hard
HEAD is now at a2d93d2 Remove some obsolete shell scripts
+ git submodule foreach 'git config core.autocrlf false'
Entering 'java/win64'
Entering 'modules/TrakEM2'
Entering 'modules/ij-plugins'
Entering 'modules/imagej2'
Entering 'modules/imglib'
Entering 'modules/mpicbg'
Entering 'modules/weka'
+ git submodule foreach 'git reset --hard'
Entering 'java/win64'
HEAD is now at c0180d4 Mark .exe, .dll and .sh files as executable
Entering 'modules/TrakEM2'
HEAD is now at 86b9891 forgot to set isAligned flag in elastic layer alignment parameter
Entering 'modules/ij-plugins'
HEAD is now at 737d659 GlassPane component for easy blocking input to windows. Described by Alexander Potochkin http://weblogs.java.net/blog/alexfromsun/archive/2007/06/_enablingdisabl_1.html.
Entering 'modules/imagej2'
HEAD is now at b034099 Enhance Javadoc of SSHSessionCreator
Entering 'modules/imglib'
HEAD is now at 5c2e080 Merge branch 'master' into scifiocells
Entering 'modules/mpicbg'
HEAD is now at d7d5419 some cosmetics
Entering 'modules/weka'
HEAD is now at 4f6b274 Added a toString() method to the OLMRules inner class to print out the instances in the rule set.
+ git submodule init
Submodule 'java/linux' () registered for path 'java/linux'
Submodule 'java/linux-amd64' () registered for path 'java/linux-amd64'
Submodule 'java/macosx-java3d' () registered for path 'java/macosx-java3d'
Submodule 'java/win32' () registered for path 'java/win32'
Submodule 'java/win64' () registered for path 'java/win64'
Submodule 'TrakEM2' () registered for path 'modules/TrakEM2'
Submodule 'ij-plugins' () registered for path 'modules/ij-plugins'
Submodule 'imagej2' () registered for path 'modules/imagej2'
Submodule 'imglib' () registered for path 'modules/imglib'
Submodule 'mpicbg' () registered for path 'modules/mpicbg'
Submodule 'weka' () registered for path 'modules/weka'
+ git submodule sync
Synchronizing submodule url for 'java/linux'
Synchronizing submodule url for 'java/linux-amd64'
Synchronizing submodule url for 'java/macosx-java3d'
Synchronizing submodule url for 'java/win32'
Synchronizing submodule url for 'java/win64'
Synchronizing submodule url for 'TrakEM2'
Synchronizing submodule url for 'ij-plugins'
Synchronizing submodule url for 'imagej2'
Synchronizing submodule url for 'imglib'
Synchronizing submodule url for 'mpicbg'
Synchronizing submodule url for 'weka'
++ git ls-files --stage
++ sed -n 's/^160000 .\{40\} 0.//p'
++ grep -v java/
+ SUBMODULES='modules/TrakEM2
modules/ij-plugins
modules/imagej2
modules/imglib
modules/mpicbg
modules/weka'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/TrakEM2
Submodule 'TrakEM2' () registered for path 'modules/TrakEM2'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/ij-plugins
Submodule 'ij-plugins' () registered for path 'modules/ij-plugins'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/imagej2
Submodule 'imagej2' () registered for path 'modules/imagej2'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/imglib
Submodule 'imglib' () registered for path 'modules/imglib'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/mpicbg
Submodule 'mpicbg' () registered for path 'modules/mpicbg'
+ for i in '$SUBMODULES'
+ git submodule update --init -- modules/weka
Submodule 'weka' () registered for path 'modules/weka'
+ git submodule foreach 'git clean -dfx'
Entering 'java/win64'
Entering 'modules/TrakEM2'
Removing T2-NIT/target/
Removing T2-TreelineGraph/target/
Removing TrakEM2_/target/
Removing VectorString/target/
Entering 'modules/ij-plugins'
Entering 'modules/imagej2'
Removing app/target/
Removing core/core/target/
Removing core/data/target/
Removing core/io/target/
Removing core/legacy/target/
Removing core/options/target/
Removing core/ui/target/
Removing core/updater/target/
Removing minimaven/target/
Removing plugins/commands/target/
Removing plugins/platforms/target/
Removing plugins/scripting/beanshell/target/
Removing plugins/scripting/java/target/
Removing plugins/text/target/
Removing plugins/tools/target/
Removing plugins/uis/awt/target/
Removing plugins/uis/pivot/target/
Removing plugins/uis/swing/target/
Removing plugins/uis/swt/target/
Removing plugins/uploaders/ssh/target/
Removing plugins/uploaders/webdav/target/
Removing ui/awt-swing/common/target/
Removing ui/awt-swing/util/target/
Removing ui/swing/commands/target/
Removing ui/swing/script-editor/target/
Removing ui/swing/tools/target/
Removing ui/swing/updater/target/
Removing ui/swing/util/target/
Entering 'modules/imglib'
Removing algorithms/core/target/
Removing algorithms/gpl/target/
Removing algorithms/legacy/target/
Removing core/target/
Removing examples/target/
Removing ij/target/
Removing io/target/
Removing ops/target/
Removing realtransform/target/
Removing scripting/target/
Removing ui/target/
warning: failed to remove ops/target/
Stopping at 'modules/imglib'; script returned non-zero status.
Build step 'Execute shell' marked build as failure
Build step 'Groovy Postbuild' marked build as failure