[ImageJ-builds] Build failed in Jenkins: Synchronize-and-deploy-IJ1 #1494

jenkins at imagej.net jenkins at imagej.net
Sat Mar 30 20:24:06 CDT 2013 

See <http://jenkins.imagej.net/job/Synchronize-and-deploy-IJ1/1494/>

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[...truncated 474 lines...]
  inflating: source/ij/plugin/filter/Filler.java  
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  inflating: source/ij/plugin/filter/FractalBoxCounter.java  
  inflating: source/ij/plugin/filter/GaussianBlur.java  
  inflating: source/ij/plugin/filter/ImageMath.java  
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  inflating: source/ij/plugin/filter/Info.java  
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  inflating: source/ij/plugin/filter/MaximumFinder.java  
  inflating: source/ij/plugin/filter/ParticleAnalyzer.java  
  inflating: source/ij/plugin/filter/PlugInFilter.java  
  inflating: source/ij/plugin/filter/PlugInFilterRunner.java  
  inflating: source/ij/plugin/filter/Printer.java  
  inflating: source/ij/plugin/filter/Profiler.java  
  inflating: source/ij/plugin/filter/RGBStackSplitter.java  
  inflating: source/ij/plugin/filter/RankFilters.java  
  inflating: source/ij/plugin/filter/Resizer.java  
  inflating: source/ij/plugin/filter/RoiWriter.java  
  inflating: source/ij/plugin/filter/Rotator.java  
  inflating: source/ij/plugin/filter/SaltAndPepper.java  
  inflating: source/ij/plugin/filter/ScaleDialog.java  
  inflating: source/ij/plugin/filter/Shadows.java  
  inflating: source/ij/plugin/filter/StackLabeler.java  
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  inflating: source/ij/plugin/frame/Channels.java  
  inflating: source/ij/plugin/frame/ColorPicker.java  
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  inflating: source/ij/plugin/frame/MemoryMonitor.java  
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  inflating: source/ij/plugin/tool/ArrowTool.java  
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  inflating: source/ij/plugin/tool/MacroToolRunner.java  
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  inflating: source/ij/process/FloatProcessor.java  
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  inflating: source/ij/process/ShortProcessor.java  
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  inflating: source/ij/process/StackProcessor.java  
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  inflating: source/ij/process/TypeConverter.java  
  inflating: source/ij/text/TextCanvas.java  
  inflating: source/ij/text/TextPanel.java  
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  inflating: source/ij/util/ArrayUtil.java  
  inflating: source/ij/util/DicomTools.java  
  inflating: source/ij/util/Java2.java  
  inflating: source/ij/util/StringSorter.java  
  inflating: source/ij/util/ThreadUtil.java  
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  inflating: source/ij/util/WildcardMatch.java  
  inflating: source/images/about.jpg  
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  inflating: source/macros/AddParticles.txt  
  inflating: source/macros/ConvertStackToBinary.txt  
  inflating: source/macros/DeveloperMenuTool.txt  
  inflating: source/macros/FloodFillTool.txt  
  inflating: source/macros/HyperStackMaker.txt  
  inflating: source/macros/LUTMenuTool.txt  
  inflating: source/macros/Macro_Tool.txt  
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  inflating: source/macros/RotateSelection.txt  
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  inflating: source/macros/StacksMenuTool.txt  
  inflating: source/macros/StartupMacros.txt  
  inflating: source/macros/TimeStamp.ijm  
  inflating: source/plugins/JavaScriptEvaluator.class  
  inflating: source/plugins/JavaScriptEvaluator.source  
  inflating: source/plugins/MacAdapter.class  
  inflating: source/plugins/MacAdapter.source  
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+ cd source
+ pwd
+ export GIT_WORK_TREE=/data/devel/jenkins/jobs/Synchronize-and-deploy-IJ1/workspace/tmpCommit/source
+ find ( -name .DS_Store -name .FBCIndex -o -name .FBCLockFolder -o -name .gdb_history ) -exec rm -rf {} ;
find: `./.FBCLockFolder': No such file or directory
+ echo No temporary files removed
No temporary files removed
+ + xargs -0find perl /data/devel/jenkins/jobs/Synchronize-and-deploy-IJ1/workspace/tools/mac2unix.pl
 -type f -print0
+ find -type f -print0
+ xargs -0 git update-index --add
+ git write-tree
+ tree=aab441a54a59a81ce95047a59d572b57db2f07ab
+ export GIT_AUTHOR_NAME=Wayne Rasband
+ export GIT_AUTHOR_EMAIL=wsr at nih.gov
+ + git commit-tree aab441a54a59a81ce95047a59d572b57db2f07ab -p dbb719b5e100c36339e1166420950e2ac0b63c46
echo   ��� 1.47n 30 March 2013
      ��� The Image>Show Info command uses the Exif Reader FIX plugin
        (version 2013/03/29 or later) to display Exif data of JPEG
        images.
      ��� Added a Macros>Show Log Window command to the macro editor.
      ��� Thanks to Johannes Schindelin, the eval
        ("script",JavaScriptCode) macro function now returns, as a
        string, the value of the last expression evaluated.
      ��� The ImageListener interface triggers an image updated event
        when an image is renamed.
      ��� The Compile and Run command downloads the Java compiler FIX to
        the plugins/jars folder as needed.
      ��� Added the blurGaussian() and applyMacro() methods to the
        ImageProcessor class (example1, example2 FIX).
      ��� Added the Overlay.setPosition(c,z,t) and Overlay.drawLabels()
        (no overlay???) macro functions (DOCS).
      ��� Fixed a bug that caused the Python print statement to not work
        as expected.
      ��� Thanks to Julian Cooper, fixed a bug that caused bounding box
        values displayed in the Results window, when measuring lines
        selections, to always be in pixel units.
      ��� Thanks to Curtis Rueden, fixed a bug that caused the ROI
        Manager to not restore hyperstack ROIs to the current CZT
        position.
      ��� Thanks to Julian Cooper, fixed a bug that caused vertical lines
        selections at the left image edge or horizontal line selections
        at the top image edge to not be restored correctly.
      ��� Thanks to Dimiter Prodanov, fixed a bug that could cause the
        ROI Manager to throw an exception if it contained a zero-point
        PolygonRoi.
      ��� Thanks to Michael Epping, fixed bugs that caused the Flip
        Horizontally, Flip Vertically, Rotate Left and Rotate Right
        commands to not correctly transform the image origin.
      ��� Thanks to Rich VanMetter, fixed a bug that caused some DICOM
        images to open slowly.
      ��� Thanks to Stephen Cody, fixed a bug that caused the "Select"
        option in Image>Adjust>Color Threshold to sometimes not work as
        expected.
+ commit=38aa61b29633bd6afe230650f69bb25f0f4997df
+ git update-ref refs/heads/imagej 38aa61b29633bd6afe230650f69bb25f0f4997df
+ cd ../..
+ rm -rf tmpCommit tmpIndex
+ dirname tools/jenkins-job.sh
+ sh -x tools/sync-with-imagej.sh
+ URL=git://github.com/fiji/ImageJA
+ BRANCH=refs/heads/master
+ IJ1BRANCH=refs/heads/imagej
+ test a--wayne = a
+ NEED_TO_UPDATE_WORKING_TREE=
+ git config --bool core.bare
+ test false = true
+ git symbolic-ref HEAD
+ test refs/heads/master != 
+ git fetch git://github.com/fiji/ImageJA refs/heads/master
+ ERROR=From git://github.com/fiji/ImageJA
 * branch            master     -> FETCH_HEAD
+ git rev-parse refs/heads/master
+ HEAD=abb5fcbd1af222c6a4054bf94b6c30f2036769a2
+ test -z 
+ git push . FETCH_HEAD:refs/heads/master
Everything up-to-date
+ git rev-parse refs/heads/master
+ HEAD=abb5fcbd1af222c6a4054bf94b6c30f2036769a2
+ git rev-parse refs/heads/imagej
+ IJ1HEAD=38aa61b29633bd6afe230650f69bb25f0f4997df
+ git merge-base 38aa61b29633bd6afe230650f69bb25f0f4997df abb5fcbd1af222c6a4054bf94b6c30f2036769a2
+ test 38aa61b29633bd6afe230650f69bb25f0f4997df != dbb719b5e100c36339e1166420950e2ac0b63c46
+ git log -1 --pretty=format:%s 38aa61b29633bd6afe230650f69bb25f0f4997df
+ sed -n s/^[^0-9]*\([^ 0-9A-Za-z] \)\?\([1-9][\.0-9]*.\)[^0-9A-Za-z].*$/\2/p
+ VERSION=1.47n
+ git rev-parse --git-dir
+ export GIT_INDEX_FILE=.git/IJ1INDEX
+ git read-tree 38aa61b29633bd6afe230650f69bb25f0f4997df
+ git show abb5fcbd1af222c6a4054bf94b6c30f2036769a2:pom.xml
+ sed /^\t</s/\(<version>\).*\(<\/version>\)/\11.47n\2/
+ git hash-object -w .git/IJ1INDEX.pom.new
+ POMHASH=dc2539c1ef8c4de5ac2e16c8fb8ff7ce3c45576d
+ printf 100644 dc2539c1ef8c4de5ac2e16c8fb8ff7ce3c45576d 0\tpom.xml\n
+ git rev-parse abb5fcbd1af222c6a4054bf94b6c30f2036769a2:.gitignore
+ GITIGNORE=beef00d016539f0af7e0cb61be0ef1028cc8db48
+ printf 100644 beef00d016539f0af7e0cb61be0ef1028cc8db48 0\t.gitignore\n
+ git ls-files --stage
+ mv .git/IJ1INDEX .git/IJ1INDEX.old
+ sed -e s~\t\(.*\.java\)$~\tsrc/main/java/\1~ -e s~\tplugins/\(.*\)\.source$~\tsrc/main/java/\1.java~ -e s~\t\(IJ_Props.txt\|macros/\)~\tsrc/main/resources/\1~ -e s~\timages/~\tsrc/main/resources/~ -e s~\t\(MANIFEST.MF\)$~\tsrc/main/resources/META-INF/\1~ -e /\t\(plugins\/.*\.class\|.FBCIndex\|ij\/plugin\/RandomOvals.txt\)$/d
+ git update-index --index-info
+ echo Synchronize with ImageJ 1.47n
+ git write-tree
+ TREE=c177dc9ade1e8199b01300e59f4f4a7e2d5e9f75
+ git commit-tree c177dc9ade1e8199b01300e59f4f4a7e2d5e9f75 -p abb5fcbd1af222c6a4054bf94b6c30f2036769a2 -p 38aa61b29633bd6afe230650f69bb25f0f4997df
+ NEWHEAD=740c72e2e4ca40f0a2041933c25a453930039ac3
+ git update-ref -m Synchronize with ImageJ1 refs/heads/master 740c72e2e4ca40f0a2041933c25a453930039ac3 abb5fcbd1af222c6a4054bf94b6c30f2036769a2
+ test -z 
+ test -n 
+ git push git at dev.imagejdev.org:imageja.git imagej master
+ cd tools
+ git push git at dev.imagejdev.org:imageja.git tools
+ ERR=To git at dev.imagejdev.org:imageja.git
   dbb719b..38aa61b  imagej -> imagej
   abb5fcb..740c72e  master -> master
Everything up-to-date
+ git push hudson-imagej at fiji.sc:/srv/git/ImageJA.git imagej master
+ ERR=Permission denied, please try again.
Permission denied, please try again.
Permission denied (publickey,password).
fatal: The remote end hung up unexpectedly
+ echo Permission denied, please try again.
Permission denied, please try again.
Permission denied (publickey,password).
fatal: The remote end hung up unexpectedlyCould not push
Permission denied, please try again.
Permission denied, please try again.
Permission denied (publickey,password).
fatal: The remote end hung up unexpectedlyCould not push
+ exit 1
Build step 'Execute shell' marked build as failure

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