[ImageJ-builds] Build failed in Jenkins: Fiji-Maven #405

Tue Mar 19 14:59:07 CDT 2013

See <http://jenkins.imagej.net/job/Fiji-Maven/405/>

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[...truncated 7223 lines...]
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/weave_jy2java/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/weave_jy2java/target/surefire-reports

-------------------------------------------------------
 T E S T S
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Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/weave_jy2java/target/weave_jy2java-2.0.0-SNAPSHOT.jar
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/weave_jy2java/target/weave_jy2java-2.0.0-SNAPSHOT-sources.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/weave_jy2java/target/weave_jy2java-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/weave_jy2java/2.0.0-SNAPSHOT/weave_jy2java-2.0.0-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/weave_jy2java/target/weave_jy2java-2.0.0-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/weave_jy2java/2.0.0-SNAPSHOT/weave_jy2java-2.0.0-SNAPSHOT-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:weave_jy2java:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:weave_jy2java:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:weave_jy2java:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] snapshot sc.fiji:weave_jy2java:2.0.0-SNAPSHOT: checking for updates from java.net
[INFO] Copying weave_jy2java-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Dependency fiji-compat-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency javassist-3.14.0-GA.jar is already there; skipping
[INFO] Dependency fiji-scripting-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency bsh-2.0b4.jar is already there; skipping
[INFO] Dependency js-1.7R2.jar is already there; skipping
[INFO] Dependency jython-2.5.2.jar is already there; skipping
[INFO] Dependency ij-1.47m.jar is already there; skipping
[INFO] Dependency Refresh_Javas-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency fake-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency Script_Editor-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency autocomplete-0.4.jar is already there; skipping
[INFO] Dependency commons-math-3.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency fiji-lib-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency imglib2-ij-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency imglib2-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency jfreechart-1.0.14.jar is already there; skipping
[INFO] Dependency jcommon-1.0.17.jar is already there; skipping
[INFO] Dependency xml-apis-1.3.04.jar is already there; skipping
[INFO] Dependency itext-2.1.5.jar is already there; skipping
[INFO] Dependency bcmail-jdk14-138.jar is already there; skipping
[INFO] Dependency bcprov-jdk14-138.jar is already there; skipping
[INFO] Dependency rsyntaxtextarea-1.4.1.jar is already there; skipping
[INFO] Dependency BeanShell_Interpreter-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency CLI_-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency Clojure_Interpreter-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency clojure-1.3.0.jar is already there; skipping
[INFO] Dependency JRuby_Interpreter-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency jruby-1.6.7.2.jar is already there; skipping
[INFO] Dependency Javascript_-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency Jython_Interpreter-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency ij-minimaven-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency ij-core-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency scijava-common-1.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency sezpoz-1.9.jar is already there; skipping
[INFO] Dependency eventbus-1.4.jar is already there; skipping
[INFO] ------------------------------------------------------------------------
[INFO] Building Aggregator project for the Fiji submodules
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [site:attach-descriptor {execution: default-attach-descriptor}]
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/modules/pom.xml to /var/lib/jenkins/.m2/repository/sc/fiji/pom-fiji-submodules/2.0.0-SNAPSHOT/pom-fiji-submodules-2.0.0-SNAPSHOT.pom
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from java.net
[INFO] 
[INFO] 
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] ------------------------------------------------------------------------
[INFO] Aggregator project for the Fiji project ............... SUCCESS [6.512s]
[INFO] Aggregator project for the Fiji plugins ............... SUCCESS [0.147s]
[INFO] jars/fiji-lib.jar ..................................... SUCCESS [2.288s]
[INFO] jars/pal-optimization.jar ............................. SUCCESS [1.168s]
[INFO] jars/VIB-lib.jar ...................................... SUCCESS [3.942s]
[INFO] plugins/3D_Viewer.jar ................................. SUCCESS [5.291s]
[INFO] plugins/level_sets.jar ................................ SUCCESS [1.516s]
[INFO] plugins/3D_Blob_Segmentation.jar ...................... SUCCESS [1.028s]
[INFO] plugins/3D_Objects_Counter.jar ........................ SUCCESS [0.931s]
[INFO] plugins/Algorithm_Launcher.jar ........................ SUCCESS [1.390s]
[INFO] plugins/AnalyzeSkeleton_.jar .......................... SUCCESS [1.184s]
[INFO] plugins/Analyze_Reader_Writer.jar ..................... SUCCESS [0.780s]
[INFO] plugins/Anisotropic_Diffusion_2D.jar .................. SUCCESS [0.778s]
[INFO] plugins/Arrow_.jar .................................... SUCCESS [0.991s]
[INFO] plugins/Auto_Threshold.jar ............................ SUCCESS [0.993s]
[INFO] plugins/BalloonSegmentation_.jar ...................... SUCCESS [1.413s]
[INFO] jars/fiji-compat.jar .................................. SUCCESS [1.488s]
[INFO] jars/fiji-scripting.jar ............................... SUCCESS [1.258s]
[INFO] plugins/BeanShell_Interpreter.jar ..................... SUCCESS [0.811s]
[INFO] plugins/Bug_Submitter.jar ............................. SUCCESS [5.158s]
[INFO] plugins/CLI_.jar ...................................... SUCCESS [1.178s]
[INFO] plugins/CPU_Meter.jar ................................. SUCCESS [1.039s]
[INFO] plugins/Calculator_Plus.jar ........................... SUCCESS [0.729s]
[INFO] plugins/Clojure_Interpreter.jar ....................... SUCCESS [1.029s]
[INFO] plugins/Colocalisation_Analysis.jar ................... SUCCESS [3.795s]
[INFO] plugins/Color_Histogram.jar ........................... SUCCESS [1.288s]
[INFO] plugins/Color_Inspector_3D.jar ........................ SUCCESS [1.724s]
[INFO] plugins/Colour_Deconvolution.jar ...................... SUCCESS [0.801s]
[INFO] plugins/CorrectBleach_.jar ............................ SUCCESS [0.815s]
[INFO] plugins/Fiji_Plugins.jar .............................. SUCCESS [1.588s]
[INFO] plugins/SPIM_Opener.jar ............................... SUCCESS [1.094s]
[INFO] plugins/SPIM_Registration.jar ......................... SUCCESS [7.791s]
[INFO] plugins/Stitching_.jar ................................ SUCCESS [3.692s]
[INFO] plugins/Descriptor_based_registration.jar ............. SUCCESS [2.024s]
[INFO] plugins/Dichromacy_.jar ............................... SUCCESS [0.749s]
[INFO] plugins/Differentials_.jar ............................ SUCCESS [0.799s]
[INFO] plugins/Directionality_.jar ........................... SUCCESS [1.068s]
[INFO] jars/imageware.jar .................................... SUCCESS [3.173s]
[INFO] jars/wavelets.jar ..................................... SUCCESS [0.901s]
[INFO] plugins/Extended_Depth_Field.jar ...................... SUCCESS [2.457s]
[INFO] plugins/FS_Align_TrakEM2.jar .......................... SUCCESS [6.768s]
[INFO] jars/imagescience.jar ................................. SUCCESS [2.725s]
[INFO] plugins/FeatureJ_.jar ................................. SUCCESS [1.053s]
[INFO] plugins/Feature_Detection.jar ......................... SUCCESS [0.947s]
[INFO] plugins/Fiji_Archipelago.jar .......................... SUCCESS [3.844s]
[INFO] jars/fake.jar ......................................... SUCCESS [1.809s]
[INFO] plugins/JRuby_Interpreter.jar ......................... SUCCESS [1.097s]
[INFO] plugins/Javascript_.jar ............................... SUCCESS [0.851s]
[INFO] plugins/Jython_Interpreter.jar ........................ SUCCESS [0.934s]
[INFO] plugins/Refresh_Javas.jar ............................. SUCCESS [1.055s]
[INFO] plugins/Script_Editor.jar ............................. SUCCESS [2.668s]
[INFO] plugins/Fiji_Developer.jar ............................ SUCCESS [1.748s]
[INFO] plugins/Fiji_Package_Maker.jar ........................ SUCCESS [1.004s]
[INFO] plugins/Fiji_Updater.jar .............................. SUCCESS [0.909s]
[INFO] plugins/FlowJ_.jar .................................... SUCCESS [2.428s]
[INFO] plugins/Graph_Cut.jar ................................. SUCCESS [1.500s]
[INFO] plugins/Gray_Morphology.jar ........................... SUCCESS [1.069s]
[INFO] plugins/Helmholtz_Analysis.jar ........................ SUCCESS [0.762s]
[INFO] plugins/IJ_Robot.jar .................................. SUCCESS [1.476s]
[INFO] plugins/IO_.jar ....................................... SUCCESS [1.929s]
[INFO] jars/jep.jar .......................................... SUCCESS [3.498s]
[INFO] plugins/Image_Expression_Parser.jar ................... SUCCESS [1.757s]
[INFO] plugins/Interactive_3D_Surface_Plot.jar ............... SUCCESS [1.444s]
[INFO] plugins/IsoData_Classifier.jar ........................ SUCCESS [2.253s]
[INFO] plugins/Kuwahara_Filter.jar ........................... SUCCESS [0.839s]
[INFO] plugins/LSM_Reader.jar ................................ SUCCESS [0.984s]
[INFO] plugins/LSM_Toolbox.jar ............................... SUCCESS [1.843s]
[INFO] plugins/Lasso_and_Blow_Tool.jar ....................... SUCCESS [0.761s]
[INFO] plugins/Linear_Kuwahara.jar ........................... SUCCESS [0.730s]
[INFO] plugins/LocalThickness_.jar ........................... SUCCESS [0.826s]
[INFO] plugins/MTrack2_.jar .................................. SUCCESS [0.877s]
[INFO] plugins/MTrackJ_.jar .................................. SUCCESS [1.640s]
[INFO] plugins/M_I_P.jar ..................................... SUCCESS [0.851s]
[INFO] plugins/Manual_Tracking.jar ........................... SUCCESS [1.079s]
[INFO] plugins/MosaicJ_.jar .................................. SUCCESS [1.647s]
[INFO] plugins/Multi_Kymograph.jar ........................... SUCCESS [0.880s]
[INFO] plugins/PIV_analyser.jar .............................. SUCCESS [1.020s]
[INFO] plugins/PointPicker_.jar .............................. SUCCESS [1.045s]
[INFO] plugins/QuickPALM_.jar ................................ SUCCESS [1.113s]
[INFO] plugins/RATS_.jar ..................................... SUCCESS [1.411s]
[INFO] plugins/RandomJ_.jar .................................. SUCCESS [0.930s]
[INFO] plugins/Reconstruct_Reader.jar ........................ SUCCESS [2.005s]
[INFO] plugins/Samples_.jar .................................. SUCCESS [1.127s]
[INFO] plugins/Scala_Interpreter.jar ......................... SUCCESS [1.423s]
[INFO] plugins/Series_Labeler.jar ............................ SUCCESS [0.949s]
[INFO] plugins/SheppLogan_.jar ............................... SUCCESS [2.364s]
[INFO] Sholl Analysis ........................................ SUCCESS [1.033s]
[INFO] plugins/Skeletonize3D_.jar ............................ SUCCESS [0.800s]
[INFO] plugins/VIB_.jar ...................................... SUCCESS [2.690s]
[INFO] plugins/Simple_Neurite_Tracer.jar ..................... SUCCESS [2.529s]
[INFO] plugins/Siox_Segmentation.jar ......................... SUCCESS [1.589s]
[INFO] plugins/Snakuscule_.jar ............................... SUCCESS [1.153s]
[INFO] plugins/SplineDeformationGenerator_.jar ............... SUCCESS [1.129s]
[INFO] plugins/StackReg_.jar ................................. SUCCESS [0.997s]
[INFO] plugins/Stack_Manipulation.jar ........................ SUCCESS [1.044s]
[INFO] plugins/Statistical_Region_Merging.jar ................ SUCCESS [0.693s]
[INFO] plugins/Sync_Win.jar .................................. SUCCESS [1.220s]
[INFO] plugins/Thread_Killer.jar ............................. SUCCESS [0.650s]
[INFO] plugins/Threshold_Colour.jar .......................... SUCCESS [0.971s]
[INFO] plugins/Time_Stamper.jar .............................. SUCCESS [1.284s]
[INFO] plugins/ToAST_.jar .................................... SUCCESS [1.054s]
[INFO] plugins/TopoJ_.jar .................................... SUCCESS [0.760s]
[INFO] plugins/TrackMate_.jar ................................ SUCCESS [6.277s]
[INFO] plugins/Trainable_Segmentation.jar .................... SUCCESS [3.618s]
[INFO] plugins/TransformJ_.jar ............................... SUCCESS [2.724s]
[INFO] plugins/TurboReg_.jar ................................. SUCCESS [1.599s]
[INFO] plugins/UnwarpJ_.jar .................................. SUCCESS [1.746s]
[INFO] jars/Updater_Fix.jar .................................. SUCCESS [0.812s]
[INFO] plugins/Vaa3d_Reader.jar .............................. SUCCESS [0.903s]
[INFO] plugins/Video_Editing.jar ............................. SUCCESS [0.864s]
[INFO] plugins/View5D_.jar ................................... SUCCESS [1.981s]
[INFO] plugins/Volume_Calculator.jar ......................... SUCCESS [1.258s]
[INFO] plugins/Volume_Viewer.jar ............................. SUCCESS [1.703s]
[INFO] plugins/bUnwarpJ_.jar ................................. SUCCESS [2.158s]
[INFO] plugins/blockmatching_.jar ............................ SUCCESS [1.804s]
[INFO] jars/mij.jar .......................................... SUCCESS [0.794s]
[INFO] plugins/panorama_.jar ................................. SUCCESS [1.041s]
[INFO] plugins/register_virtual_stack_slices.jar ............. SUCCESS [1.884s]
[INFO] plugins/registration_3d.jar ........................... SUCCESS [0.994s]
[INFO] jars/weave_jy2java.jar ................................ SUCCESS [1.888s]
[INFO] Aggregator project for the Fiji submodules ............ SUCCESS [0.153s]
[INFO] ------------------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 3 minutes 32 seconds
[INFO] Finished at: Tue Mar 19 14:59:06 CDT 2013
[INFO] Final Memory: 160M/4606M
[INFO] ------------------------------------------------------------------------
Copied 2 artifacts from "SciJava-common" build number 83
[workspace] $ /bin/sh -xe /tmp/hudson7827527777045687103.sh
FATAL: command execution failed
java.io.IOException: Cannot run program "/bin/sh" (in directory "<http://jenkins.imagej.net/job/Fiji-Maven/ws/")>: java.io.IOException: error=24, Too many open files
	at java.lang.ProcessBuilder.start(ProcessBuilder.java:460)
	at hudson.Proc$LocalProc.<init>(Proc.java:244)
	at hudson.Proc$LocalProc.<init>(Proc.java:216)
	at hudson.Launcher$LocalLauncher.launch(Launcher.java:698)
	at hudson.Launcher$ProcStarter.start(Launcher.java:329)
	at hudson.Launcher$ProcStarter.join(Launcher.java:336)
	at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:82)
	at hudson.tasks.CommandInterpreter.perform(CommandInterpreter.java:58)
	at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:19)
	at hudson.model.AbstractBuild$AbstractRunner.perform(AbstractBuild.java:692)
	at hudson.model.Build$RunnerImpl.build(Build.java:177)
	at hudson.model.Build$RunnerImpl.doRun(Build.java:139)
	at hudson.model.AbstractBuild$AbstractRunner.run(AbstractBuild.java:458)
	at hudson.model.Run.run(Run.java:1376)
	at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46)
	at hudson.model.ResourceController.execute(ResourceController.java:88)
	at hudson.model.Executor.run(Executor.java:175)
Caused by: java.io.IOException: java.io.IOException: error=24, Too many open files
	at java.lang.UNIXProcess.<init>(UNIXProcess.java:148)
	at java.lang.ProcessImpl.start(ProcessImpl.java:65)
	at java.lang.ProcessBuilder.start(ProcessBuilder.java:453)
	... 16 more
Build step 'Execute shell' marked build as failure