[ImageJ-builds] Build failed in Jenkins: fiji-windows-core #338
Jenkins Daemon
jenkins at qa.nest-initiative.org
Thu Mar 14 09:40:04 CDT 2013
See <https://qa.nest-initiative.org/job/fiji-windows-core/338/changes>
Changes:
[Johannes Schindelin] Make Fiji-daily pass again
------------------------------------------
[...truncated 160 lines...]
+ for gav in '"$@"'
+ artifactId=ij-minimaven:2.0.0-SNAPSHOT
+ version=2.0.0-SNAPSHOT
+ artifactId=ij-minimaven
+ path=jars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ cd /c/jenkins/workspace/fiji-windows-core
+ test -f jars/ij-minimaven.jar
+ for file in 'jars/"$artifactId"-[0-9]*.jar'
+ test 'ajars/ij-minimaven-[0-9]*.jar' = ajars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ test -f 'jars/ij-minimaven-[0-9]*.jar'
+ continue
+ uptodate /c/jenkins/workspace/fiji-windows-core/./Build.sh jars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ test -f jars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ echo 'Downloading net.imagej:ij-minimaven:2.0.0-SNAPSHOT'
Downloading net.imagej:ij-minimaven:2.0.0-SNAPSHOT
+ cd jars/
+ sh /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh install net.imagej:ij-minimaven:2.0.0-SNAPSHOT
+ test '!' -f jars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ touch jars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ maven_update net.imagej:ij-updater-ssh:2.0.0-SNAPSHOT
+ uptodate /c/jenkins/workspace/fiji-windows-core/./Build.sh /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh
+ test -f /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh
+ test /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh -nt /c/jenkins/workspace/fiji-windows-core/./Build.sh
+ case "$2" in
+ for gav in '"$@"'
+ artifactId=ij-updater-ssh:2.0.0-SNAPSHOT
+ version=2.0.0-SNAPSHOT
+ artifactId=ij-updater-ssh
+ path=jars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ cd /c/jenkins/workspace/fiji-windows-core
+ test -f jars/ij-updater-ssh.jar
+ for file in 'jars/"$artifactId"-[0-9]*.jar'
+ test 'ajars/ij-updater-ssh-[0-9]*.jar' = ajars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ test -f 'jars/ij-updater-ssh-[0-9]*.jar'
+ continue
+ uptodate /c/jenkins/workspace/fiji-windows-core/./Build.sh jars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ test -f jars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ echo 'Downloading net.imagej:ij-updater-ssh:2.0.0-SNAPSHOT'
Downloading net.imagej:ij-updater-ssh:2.0.0-SNAPSHOT
+ cd jars/
+ sh /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh install net.imagej:ij-updater-ssh:2.0.0-SNAPSHOT
+ test '!' -f jars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ touch jars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ maven_update net.imagej:ij-ui-swing-updater:2.0.0-SNAPSHOT
+ uptodate /c/jenkins/workspace/fiji-windows-core/./Build.sh /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh
+ test -f /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh
+ test /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh -nt /c/jenkins/workspace/fiji-windows-core/./Build.sh
+ case "$2" in
+ for gav in '"$@"'
+ artifactId=ij-ui-swing-updater:2.0.0-SNAPSHOT
+ version=2.0.0-SNAPSHOT
+ artifactId=ij-ui-swing-updater
+ path=jars/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar
+ cd /c/jenkins/workspace/fiji-windows-core
+ test -f jars/ij-ui-swing-updater.jar
+ for file in 'jars/"$artifactId"-[0-9]*.jar'
+ test 'ajars/ij-ui-swing-updater-[0-9]*.jar' = ajars/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar
+ test -f 'jars/ij-ui-swing-updater-[0-9]*.jar'
+ continue
+ uptodate /c/jenkins/workspace/fiji-windows-core/./Build.sh jars/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar
+ test -f jars/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar
+ echo 'Downloading net.imagej:ij-ui-swing-updater:2.0.0-SNAPSHOT'
Downloading net.imagej:ij-ui-swing-updater:2.0.0-SNAPSHOT
+ cd jars/
+ sh /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh install net.imagej:ij-ui-swing-updater:2.0.0-SNAPSHOT
+ test '!' -f jars/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar
+ touch jars/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar
+ OPTIONS='-Dimagej.app.directory="/c/jenkins/workspace/fiji-windows-core"'
+ test 3 -gt 0
+ case "$1" in
+ OPTIONS='-Dimagej.app.directory="/c/jenkins/workspace/fiji-windows-core" -Dminimaven.updateinterval=1'
+ shift
+ test 2 -gt 0
+ case "$1" in
+ break
+ test 2 = 0
+ for name in '"$@"'
+ case "$name" in
+ artifactId=--
+ artifactId=--
+ artifactId=--
+ case "$name" in
+ eval sh /c/jenkins/workspace/fiji-windows-core/bin/ImageJ.sh --mini-maven '-Dimagej.app.directory="/c/jenkins/workspace/fiji-windows-core" -Dminimaven.updateinterval=1' -DartifactId=-- install
++ sh /c/jenkins/workspace/fiji-windows-core/bin/ImageJ.sh --mini-maven -Dimagej.app.directory=/c/jenkins/workspace/fiji-windows-core -Dminimaven.updateinterval=1 -DartifactId=-- install
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Compiling 26 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 22 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization
Compiling 190 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 121 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 35 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\level_sets
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Blob_Segmentation
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Blob_Segmentation\src\main\java\ij3d\segmentation\Blob_Segmentation_in_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Blob_Segmentation\src\main\java\ij3d\segmentation\Blob_Segmentation_in_3D.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 4 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Objects_Counter
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Objects_Counter\src\main\java\Utilities\Counter3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 3 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Algorithm_Launcher
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Algorithm_Launcher\src\main\java\AlgorithmInfo.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 6 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\AnalyzeSkeleton_
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\AnalyzeSkeleton_\src\main\java\skeleton_analysis\AnalyzeSkeleton_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Analyze_Reader_Writer
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Anisotropic_Diffusion_2D
Compiling 3 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Arrow_
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Auto_Threshold
Compiling 8 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\BalloonSegmentation_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: <https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools
Warning: <https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools
Compiling 26 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 3 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Compiling 3 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Warning: could not delete '<https://qa.nest-initiative.org/job/fiji-windows-core/ws/jars\ij-core-2.0.0-SNAPSHOT.jar'>
Warning: could not delete '<https://qa.nest-initiative.org/job/fiji-windows-core/ws/jars\scijava-common-1.0.0-SNAPSHOT.jar'>
Compiling 9 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\CPU_Meter
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Calculator_Plus
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\src\main\java\Clojure\Clojure_Interpreter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 42 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Colocalisation_Analysis\src\main\java\results\SingleWindowDisplay.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Histogram
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Histogram\src\main\java\ColorHistogram_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 4 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Inspector_3D
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Inspector_3D\src\main\java\Color_Inspector_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Colour_Deconvolution
Compiling 8 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\CorrectBleach_
Compiling 33 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins
C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\Shape_Index_Map.java:17: warning: unmappable character for encoding Cp1252
* curvature scales,� Image Vision Comput, vol. 10, no. 8,
^
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\Retinex_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 146 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 59 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration
C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\Particle.java:53: getID() in process.Particle cannot override getID() in mpicbg.models.Point; attempting to use incompatible return type
found : int
required: long
public int getID() { return id; }
^
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
1 error
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:84)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
at imagej.build.MiniMaven.main(MiniMaven.java:133)
+ for name in '"$@"'
+ case "$name" in
+ artifactId=verbose=true
+ artifactId=verbose=true
+ artifactId=verbose=true
+ case "$name" in
+ eval sh /c/jenkins/workspace/fiji-windows-core/bin/ImageJ.sh --mini-maven '-Dimagej.app.directory="/c/jenkins/workspace/fiji-windows-core" -Dminimaven.updateinterval=1' -DartifactId=verbose=true install
++ sh /c/jenkins/workspace/fiji-windows-core/bin/ImageJ.sh --mini-maven -Dimagej.app.directory=/c/jenkins/workspace/fiji-windows-core -Dminimaven.updateinterval=1 -DartifactId=verbose=true install
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Warning: <https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools
Warning: <https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Compiling 16 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration
C:\jenkins\workspace\fiji-windows-core\src-plugins\Descriptor_based_registration\src\main\java\process\Particle.java:53: getID() in process.Particle cannot override getID() in mpicbg.models.Point; attempting to use incompatible return type
found : int
required: long
public int getID() { return id; }
^
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
1 error
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:84)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
at imagej.build.MiniMaven.main(MiniMaven.java:133)
Build step 'Execute shell' marked build as failure
More information about the ImageJ-builds
mailing list