[ImageJ-builds] Build failed in Jenkins: fiji-core #665

[Jenkins Daemon]

See <https://qa.nest-initiative.org/job/fiji-core/665/changes>

Changes:

[Johannes Schindelin] Make Fiji-daily pass again

------------------------------------------
Started by remote host 144.92.48.145
Building remotely on fc-18-i386-1 in workspace <https://qa.nest-initiative.org/job/fiji-core/ws/>
Checkout:fiji-core / <https://qa.nest-initiative.org/job/fiji-core/ws/> - hudson.remoting.Channel at 63c9982e:fc-18-i386-1
Using strategy: Default
Last Built Revision: Revision 915c8daffae4ceaa52dc52ec26488626fe21672d (origin/master)
Fetching changes from 1 remote Git repository
Commencing build of Revision 324f9efed6cdfe5f002823bde8ad783baad9e1c9 (origin/master)
Checking out Revision 324f9efed6cdfe5f002823bde8ad783baad9e1c9 (origin/master)
Cleaning workspace
[fiji-core] $ /bin/bash /tmp/hudson2696563808006560903.sh
+ ./Build.sh -Dminimaven.updateinterval=1 -- verbose=true
Cloning into '<https://qa.nest-initiative.org/job/fiji-core/ws/modules/scijava-common'...>
Downloading sc.fiji:javac:2.0.0-SNAPSHOT
Downloading org.scijava:scijava-common:1.0.0-SNAPSHOT
Downloading net.imagej:ij-core:2.0.0-SNAPSHOT
Downloading net.imagej:ij-minimaven:2.0.0-SNAPSHOT
Downloading net.imagej:ij-updater-ssh:2.0.0-SNAPSHOT
Downloading net.imagej:ij-ui-swing-updater:2.0.0-SNAPSHOT
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Compiling 26 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 22 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization>
Compiling 190 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 121 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 35 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Blob_Segmentation>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 4 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Objects_Counter>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Algorithm_Launcher>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmInfo.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 6 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Analyze_Reader_Writer>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Anisotropic_Diffusion_2D>
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Arrow_>
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Auto_Threshold>
Compiling 8 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_/src/main/java/BalloonSegmentation_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: <https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar> overrides com.sun>tools

Warning: <https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar> overrides com.sun>tools

Compiling 26 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BeanShell_Interpreter>
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Bug_Submitter>
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Compiling 9 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CPU_Meter>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Calculator_Plus>
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Clojure_Interpreter>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Clojure_Interpreter/src/main/java/Clojure/Clojure_Interpreter.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 42 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/results/SingleWindowDisplay.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Histogram>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 4 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colour_Deconvolution>
Compiling 8 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_>
Compiling 33 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 146 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 59 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Descriptor_based_registration>
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Descriptor_based_registration/src/main/java/process/Particle.java>:53: getID() in process.Particle cannot override getID() in mpicbg.models.Point; attempting to use incompatible return type
found   : int
required: long
	public int getID() { return id; }	
	           ^
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
1 error
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:84)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
	at imagej.build.MiniMaven.main(MiniMaven.java:133)
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Warning: <https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar> overrides com.sun>tools

Warning: <https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar> overrides com.sun>tools

Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Compiling 16 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Descriptor_based_registration>
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Descriptor_based_registration/src/main/java/process/Particle.java>:53: getID() in process.Particle cannot override getID() in mpicbg.models.Point; attempting to use incompatible return type
found   : int
required: long
	public int getID() { return id; }	
	           ^
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
1 error
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:84)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
	at imagej.build.MiniMaven.main(MiniMaven.java:133)
Build step 'Execute shell' marked build as failure