[ImageJ-builds] Jenkins-Build fehlgeschlagen: Fiji-daily #666

[jenkins at imagej.net]

Siehe <http://jenkins.imagej.net/job/Fiji-daily/666/changes>

Änderungen:

[Johannes Schindelin] Make Fiji-daily pass again

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[...truncated 508 lines...]
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Blob_Segmentation
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Blob_Segmentation/target/classes:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Viewer/target/3D_Viewer-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/level_sets/target/level_sets-1.0.1-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar:/data/devel/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Blob_Segmentation/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Blob_Segmentation/target/classes:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Viewer/target/3D_Viewer-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/level_sets/target/level_sets-1.0.1-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar:/data/devel/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar
Note: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
3D_Objects_Counter not up-to-date because 4 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Object3D.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Objects_Counter/src/main/java/_3D_OC_Options.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Objects_Counter/src/main/java/_3D_objects_counter.java)
Compiling 4 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Objects_Counter
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Objects_Counter/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Objects_Counter/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Object3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Objects_Counter/src/main/java/_3D_OC_Options.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Objects_Counter/src/main/java/_3D_objects_counter.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Objects_Counter/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Parsing /data/devel/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-20130314.051647-1197.pom
Parsing /data/devel/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-20130314.051647-1197.pom
Parsing /data/devel/jenkins/.m2/repository/mpicbg/mpicbg/0.6.0-SNAPSHOT/mpicbg-0.6.0-20130312.161135-7.pom
Parsing /data/devel/jenkins/.m2/repository/mpicbg/pom-mpicbg/0.6.0-SNAPSHOT/pom-mpicbg-0.6.0-SNAPSHOT.pom
Parsing /data/devel/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.pom
Algorithm_Launcher not up-to-date because 3 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmInfo.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmParser.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmLauncher.java)
Compiling 3 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Algorithm_Launcher
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Algorithm_Launcher/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/data/devel/jenkins/.m2/repository/mpicbg/mpicbg/0.6.0-SNAPSHOT/mpicbg-0.6.0-20130312.161135-7.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Algorithm_Launcher/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmInfo.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmParser.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmLauncher.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Algorithm_Launcher/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/data/devel/jenkins/.m2/repository/mpicbg/mpicbg/0.6.0-SNAPSHOT/mpicbg-0.6.0-20130312.161135-7.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmInfo.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
AnalyzeSkeleton_ not up-to-date because 6 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Graph.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/SkeletonResult.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Point.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Edge.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Vertex.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java)
Compiling 6 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Graph.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/SkeletonResult.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Point.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Edge.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/Vertex.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Analyze_Reader_Writer not up-to-date because 2 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Analyze_Reader_Writer/src/main/java/Analyze_Reader.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Analyze_Reader_Writer/src/main/java/Analyze_Writer.java)
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Analyze_Reader_Writer
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Analyze_Reader_Writer/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Analyze_Reader_Writer/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Analyze_Reader_Writer/src/main/java/Analyze_Reader.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Analyze_Reader_Writer/src/main/java/Analyze_Writer.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Analyze_Reader_Writer/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Anisotropic_Diffusion_2D not up-to-date because 1 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Anisotropic_Diffusion_2D/src/main/java/anisotropic_diffusion/Anisotropic_Diffusion_2D.java)
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Anisotropic_Diffusion_2D
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Anisotropic_Diffusion_2D/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Anisotropic_Diffusion_2D/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Anisotropic_Diffusion_2D/src/main/java/anisotropic_diffusion/Anisotropic_Diffusion_2D.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Anisotropic_Diffusion_2D/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Arrow_ not up-to-date because of fiji-lib
Compiling 3 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Arrow_
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Arrow_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Arrow_/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Arrow_/src/main/java/fiji/util/ArrowTool.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Arrow_/src/main/java/fiji/util/ArrowShape.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Arrow_/src/main/java/fiji/util/ArrowOptionPanel.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Arrow_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Auto_Threshold not up-to-date because 2 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Local_Threshold.java)
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Auto_Threshold
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Auto_Threshold/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Auto_Threshold/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Threshold.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Auto_Threshold/src/main/java/fiji/threshold/Auto_Local_Threshold.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Auto_Threshold/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
BalloonSegmentation_ not up-to-date because 8 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/BalloonSegmentation_.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/utils/Watershed.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/utils/CenterlineSlice.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/utils/RandPermutation.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/utils/Kinematics.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/BalloonSequence.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/Balloon.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/BalloonPopulation.java)
Compiling 8 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/BalloonSegmentation_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/utils/Watershed.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/utils/CenterlineSlice.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/utils/RandPermutation.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/utils/Kinematics.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/BalloonSequence.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/Balloon.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/balloonstructure/BalloonPopulation.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BalloonSegmentation_/src/main/java/BalloonSegmentation_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Parsing /data/devel/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.pom
Parsing /data/devel/jenkins/.m2/repository/org/beanshell/beanshell/2.0b4/beanshell-2.0b4.pom
Parsing /data/devel/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.pom
Skipping artifact tools (for javassist): not found
Warning: /data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar overrides com.sun>tools

Skipping artifact tools (for javassist): not found
Warning: /data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar overrides com.sun>tools

Parsing /data/devel/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.pom
Parsing /data/devel/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.pom
fiji-compat not up-to-date because 26 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/Memory.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/OtherInstance.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/IJ1Patcher.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/ZLibAnalyzer.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/Headless.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/SetIcon.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/Compile_and_Run.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/User_Plugins.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/MainClassForDebugging.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/FijiClassLoader.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/CheckClassVersions.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/IJ_Alt_Key_Listener.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/SampleImageLoader.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/IJHacker.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/JavassistHelper.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/Main.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/MemoryProfiler.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/command/CommandListenerPlus.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/command/Command.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/SimpleExecuter.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/PlugInInstaller.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/FijiTools.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/InspectJar.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/gui/FileDialogDecorator.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/gui/JFileChooserDecorator.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/PerformanceProfiler.java)
BeanShell_Interpreter not up-to-date because of fiji-compat
Compiling 26 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/Memory.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/OtherInstance.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/IJ1Patcher.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/ZLibAnalyzer.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/Headless.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/SetIcon.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/Compile_and_Run.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/User_Plugins.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/MainClassForDebugging.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/FijiClassLoader.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/CheckClassVersions.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/IJ_Alt_Key_Listener.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/SampleImageLoader.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/IJHacker.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/JavassistHelper.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/Main.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/MemoryProfiler.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/command/CommandListenerPlus.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/command/Command.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/SimpleExecuter.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/PlugInInstaller.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/FijiTools.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/InspectJar.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/gui/FileDialogDecorator.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/gui/JFileChooserDecorator.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/src/main/java/fiji/PerformanceProfiler.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
fiji-scripting not up-to-date because of fiji-compat
Compiling 3 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-scripting
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-scripting/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/data/devel/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/data/devel/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-scripting/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-scripting/src/main/java/common/RefreshScripts.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-scripting/src/main/java/common/AbstractInterpreter.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-scripting/src/main/java/common/ScriptRunner.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-scripting/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/data/devel/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/data/devel/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BeanShell_Interpreter
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BeanShell_Interpreter/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-scripting/target/fiji-scripting-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/data/devel/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/data/devel/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BeanShell_Interpreter/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BeanShell_Interpreter/src/main/java/BSH/Refresh_BSH_Scripts.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BeanShell_Interpreter/src/main/java/BSH/BSH_Interpreter.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/BeanShell_Interpreter/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-scripting/target/fiji-scripting-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/data/devel/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/data/devel/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Parsing /data/devel/jenkins/.m2/repository/net/imagej/ij-updater-core/2.0.0-SNAPSHOT/ij-updater-core-2.0.0-20130301.002034-917.pom
Parsing /data/devel/jenkins/.m2/repository/net/imagej/pom-ij-core/2.0.0-SNAPSHOT/pom-ij-core-2.0.0-SNAPSHOT.pom
Parsing /data/devel/jenkins/.m2/repository/net/imagej/pom-ij-base/2.0.0-SNAPSHOT/pom-ij-base-2.0.0-SNAPSHOT.pom
Parsing /data/devel/jenkins/.m2/repository/net/imagej/ij-core/2.0.0-SNAPSHOT/ij-core-2.0.0-20130314.040424-969.pom
Parsing /data/devel/jenkins/.m2/repository/org/scijava/scijava-common/1.0.0-SNAPSHOT/scijava-common-1.0.0-20130313.202850-13.pom
Parsing /data/devel/jenkins/.m2/repository/net/java/sezpoz/sezpoz/1.9/sezpoz-1.9.pom
Parsing /data/devel/jenkins/.m2/repository/net/java/sezpoz/pom/1.9/pom-1.9.pom
Parsing /data/devel/jenkins/.m2/repository/org/sonatype/oss/oss-parent/7/oss-parent-7.pom
Parsing /data/devel/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.pom
Parsing /data/devel/jenkins/.m2/repository/net/imagej/ij-ui-swing-updater/2.0.0-SNAPSHOT/ij-ui-swing-updater-2.0.0-20130301.002043-887.pom
Parsing /data/devel/jenkins/.m2/repository/net/imagej/pom-ij-ui-swing/2.0.0-SNAPSHOT/pom-ij-ui-swing-2.0.0-SNAPSHOT.pom
Parsing /data/devel/jenkins/.m2/repository/net/imagej/pom-ij-ui/2.0.0-SNAPSHOT/pom-ij-ui-2.0.0-SNAPSHOT.pom
Parsing /data/devel/jenkins/.m2/repository/com/miglayout/miglayout/3.7.3.1/miglayout-3.7.3.1.pom
Bug_Submitter not up-to-date because 3 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Bug_Submitter/src/main/java/Bug_Submitter/SubmissionResult.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Bug_Submitter/src/main/java/Bug_Submitter/Bug_Submitter.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Bug_Submitter/src/main/java/Bug_Submitter/NewBugDialog.java)
Compiling 3 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Bug_Submitter
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Bug_Submitter/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij-core/2.0.0-SNAPSHOT/ij-core-2.0.0-20130314.040424-969.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij-ui-swing-updater/2.0.0-SNAPSHOT/ij-ui-swing-updater-2.0.0-20130301.002043-887.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij-updater-core/2.0.0-SNAPSHOT/ij-updater-core-2.0.0-20130301.002034-917.jar:/data/devel/jenkins/.m2/repository/com/miglayout/miglayout/3.7.3.1/miglayout-3.7.3.1-swing.jar:/data/devel/jenkins/.m2/repository/org/scijava/scijava-common/1.0.0-SNAPSHOT/scijava-common-1.0.0-20130313.202850-13.jar:/data/devel/jenkins/.m2/repository/net/java/sezpoz/sezpoz/1.9/sezpoz-1.9.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Bug_Submitter/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Bug_Submitter/src/main/java/Bug_Submitter/SubmissionResult.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Bug_Submitter/src/main/java/Bug_Submitter/Bug_Submitter.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Bug_Submitter/src/main/java/Bug_Submitter/NewBugDialog.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Bug_Submitter/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij-core/2.0.0-SNAPSHOT/ij-core-2.0.0-20130314.040424-969.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij-ui-swing-updater/2.0.0-SNAPSHOT/ij-ui-swing-updater-2.0.0-20130301.002043-887.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij-updater-core/2.0.0-SNAPSHOT/ij-updater-core-2.0.0-20130301.002034-917.jar:/data/devel/jenkins/.m2/repository/com/miglayout/miglayout/3.7.3.1/miglayout-3.7.3.1-swing.jar:/data/devel/jenkins/.m2/repository/org/scijava/scijava-common/1.0.0-SNAPSHOT/scijava-common-1.0.0-20130313.202850-13.jar:/data/devel/jenkins/.m2/repository/net/java/sezpoz/sezpoz/1.9/sezpoz-1.9.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
CLI_ not up-to-date because of fiji-compat
Compiling 9 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CLI_
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CLI_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-scripting/target/fiji-scripting-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/data/devel/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/data/devel/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CLI_/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CLI_/src/main/java/CLI/CustomFileFilter.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CLI_/src/main/java/CLI/TraceError.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CLI_/src/main/java/CLI/Screenshot.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CLI_/src/main/java/CLI/CLI_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CLI_/src/main/java/CLI/Refresh_Macros.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CLI_/src/main/java/CLI/ImageFileFilter.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CLI_/src/main/java/CLI/Slide_Show.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CLI_/src/main/java/CLI/OpenDirectory.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CLI_/src/main/java/CLI/MacroRecord.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CLI_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-scripting/target/fiji-scripting-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/data/devel/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/data/devel/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Parsing /data/devel/jenkins/.m2/repository/net/java/dev/jna/jna/3.2.7/jna-3.2.7.pom
CPU_Meter not up-to-date because 1 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CPU_Meter/src/main/java/CPU_Meter.java)
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CPU_Meter
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CPU_Meter/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/net/java/dev/jna/jna/3.2.7/jna-3.2.7.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CPU_Meter/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CPU_Meter/src/main/java/CPU_Meter.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CPU_Meter/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/net/java/dev/jna/jna/3.2.7/jna-3.2.7.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Calculator_Plus not up-to-date because 1 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Calculator_Plus/src/main/java/Calculator_Plus.java)
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Calculator_Plus
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Calculator_Plus/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Calculator_Plus/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Calculator_Plus/src/main/java/Calculator_Plus.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Calculator_Plus/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Parsing /data/devel/jenkins/.m2/repository/org/clojure/clojure/1.3.0/clojure-1.3.0.pom
Clojure_Interpreter not up-to-date because of fiji-compat
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Clojure_Interpreter
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Clojure_Interpreter/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:/data/devel/jenkins/.m2/repository/org/clojure/clojure/1.3.0/clojure-1.3.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-scripting/target/fiji-scripting-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/data/devel/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/data/devel/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Clojure_Interpreter/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Clojure_Interpreter/src/main/java/Clojure/Refresh_Clojure_Scripts.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Clojure_Interpreter/src/main/java/Clojure/Clojure_Interpreter.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Clojure_Interpreter/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/org/beanshell/bsh/2.0b4/bsh-2.0b4.jar:/data/devel/jenkins/.m2/repository/org/clojure/clojure/1.3.0/clojure-1.3.0.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-compat/target/fiji-compat-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-scripting/target/fiji-scripting-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/org/javassist/javassist/3.14.0-GA/javassist-3.14.0-GA.jar:/data/devel/jenkins/.m2/repository/rhino/js/1.7R2/js-1.7R2.jar:/data/devel/jenkins/.m2/repository/org/python/jython/2.5.2/jython-2.5.2.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Clojure_Interpreter/src/main/java/Clojure/Clojure_Interpreter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Parsing /data/devel/jenkins/.m2/repository/net/imglib2/imglib2-algorithms/2.0.0-SNAPSHOT/imglib2-algorithms-2.0.0-20130314.051647-1191.pom
Parsing /data/devel/jenkins/.m2/repository/net/imglib2/pom-imglib2-algorithms/2.0.0-SNAPSHOT/pom-imglib2-algorithms-2.0.0-SNAPSHOT.pom
Parsing /data/devel/jenkins/.m2/repository/net/imglib2/pom-imglib2/2.0.0-SNAPSHOT/pom-imglib2-2.0.0-SNAPSHOT.pom
Parsing /data/devel/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-SNAPSHOT/imglib2-2.0.0-20130314.051647-1192.pom
Parsing /data/devel/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-SNAPSHOT/imglib2-ij-2.0.0-20130314.051647-1188.pom
Parsing /data/devel/jenkins/.m2/repository/com/itextpdf/itextpdf/5.1.1/itextpdf-5.1.1.pom
Parsing /data/devel/jenkins/.m2/repository/com/itextpdf/itext-parent/1.0.0/itext-parent-1.0.0.pom
Colocalisation_Analysis not up-to-date because of fiji-lib
Compiling 42 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-SNAPSHOT/imglib2-2.0.0-20130314.051647-1192.jar:/data/devel/jenkins/.m2/repository/net/imglib2/imglib2-algorithms/2.0.0-SNAPSHOT/imglib2-algorithms-2.0.0-20130314.051647-1191.jar:/data/devel/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-SNAPSHOT/imglib2-ij-2.0.0-20130314.051647-1188.jar:/data/devel/jenkins/.m2/repository/com/itextpdf/itextpdf/5.1.1/itextpdf-5.1.1.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/SpearmanRankCorrelation.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/Histogram2D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/LiICQ.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/LiHistogram2D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/MissingPreconditionException.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/Algorithm.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/CostesSignificanceTest.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/Accumulator.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/InputCheck.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/AutoThresholdRegression.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/MandersColocalization.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/algorithms/PearsonsCorrelation.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/Coloc_2.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/ColocImgLibGadgets.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/tests/CostesSignificanceTest.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/tests/SpearmanRankTest.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/tests/MaskAndRoiTest.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/tests/TestImageAccessor.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/tests/PearsonsCorrelationTest.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/tests/StatisticsTest.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/tests/LiICQTest.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/tests/MandersColocalizationTest.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/tests/ColocalisationTest.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/tests/ImprovedNoise.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/gadgets/Statistics.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/gadgets/MaskFactory.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/gadgets/ThresholdMode.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/gadgets/DataContainer.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Test.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/Colocalisation_Threshold.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/TwinCursor.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/predicate/Predicate.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/predicate/MaskPredicate.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/algorithm/math/ImageStatistics.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/net/imglib2/PredicateCursor.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/results/EasyDisplay.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/results/NamedContainer.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/results/SingleWindowDisplay.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/results/ResultHandler.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/results/ValueResult.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/results/Warning.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/results/PDFWriter.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/net/imglib2/imglib2/2.0.0-SNAPSHOT/imglib2-2.0.0-20130314.051647-1192.jar:/data/devel/jenkins/.m2/repository/net/imglib2/imglib2-algorithms/2.0.0-SNAPSHOT/imglib2-algorithms-2.0.0-20130314.051647-1191.jar:/data/devel/jenkins/.m2/repository/net/imglib2/imglib2-ij/2.0.0-SNAPSHOT/imglib2-ij-2.0.0-20130314.051647-1188.jar:/data/devel/jenkins/.m2/repository/com/itextpdf/itextpdf/5.1.1/itextpdf-5.1.1.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colocalisation_Analysis/src/main/java/results/SingleWindowDisplay.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Color_Histogram not up-to-date because 1 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java)
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Histogram
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Histogram/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Histogram/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Histogram/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Color_Inspector_3D not up-to-date because 4 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Inspector_3D/src/main/java/KLT.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Inspector_3D/src/main/java/SymMat.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Inspector_3D/src/main/java/ColorKLT.java)
Compiling 4 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Inspector_3D
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Inspector_3D/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Inspector_3D/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Inspector_3D/src/main/java/KLT.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Inspector_3D/src/main/java/SymMat.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Inspector_3D/src/main/java/ColorKLT.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Inspector_3D/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Colour_Deconvolution not up-to-date because 1 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colour_Deconvolution/src/main/java/Colour_Deconvolution.java)
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colour_Deconvolution
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colour_Deconvolution/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colour_Deconvolution/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colour_Deconvolution/src/main/java/Colour_Deconvolution.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Colour_Deconvolution/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
CorrectBleach_ not up-to-date because 8 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_ExpoFit.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_SimpleRatio.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_MH.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramMatcher.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramPlot.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/histogram2/Util.java/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/histogram2/PiecewiseLinearCdf.java)
Compiling 8 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_ExpoFit.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_SimpleRatio.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection_MH.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/emblcmci/BleachCorrection.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramMatcher.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/histogram2/HistogramPlot.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/histogram2/Util.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/src/main/java/histogram2/PiecewiseLinearCdf.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/CorrectBleach_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Parsing /data/devel/jenkins/.m2/repository/mpicbg/imglib-io/2.0.0-SNAPSHOT/imglib-io-2.0.0-20130314.051647-1197.pom
Parsing /data/devel/jenkins/.m2/repository/loci/loci-common/4.5-SNAPSHOT/loci-common-4.5-20130314.084606-107.pom
Parsing /data/devel/jenkins/.m2/repository/loci/pom-scifio/4.5-SNAPSHOT/pom-scifio-4.5-SNAPSHOT.pom
Parsing /data/devel/jenkins/.m2/repository/loci/loci-legacy/4.5-SNAPSHOT/loci-legacy-4.5-20130314.084403-104.pom
Parsing /data/devel/jenkins/.m2/repository/loci/scifio-devel/4.5-SNAPSHOT/scifio-devel-4.5-20130314.084351-104.pom
Parsing /data/devel/jenkins/.m2/repository/log4j/log4j/1.2.14/log4j-1.2.14.pom
Parsing /data/devel/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.pom
Parsing /data/devel/jenkins/.m2/repository/org/slf4j/slf4j-parent/1.5.10/slf4j-parent-1.5.10.pom
Parsing /data/devel/jenkins/.m2/repository/org/slf4j/slf4j-log4j12/1.5.10/slf4j-log4j12-1.5.10.pom
Parsing /data/devel/jenkins/.m2/repository/xalan/serializer/2.7.1/serializer-2.7.1.pom
Parsing /data/devel/jenkins/.m2/repository/org/apache/apache/4/apache-4.pom
Parsing /data/devel/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.pom
Parsing /data/devel/jenkins/.m2/repository/xalan/xalan/2.7.1/xalan-2.7.1.pom
Parsing /data/devel/jenkins/.m2/repository/loci/ome-xml/4.5-SNAPSHOT/ome-xml-4.5-20130314.084453-109.pom
Parsing /data/devel/jenkins/.m2/repository/loci/scifio/4.5-SNAPSHOT/scifio-4.5-20130314.084511-108.pom
Parsing /data/devel/jenkins/.m2/repository/loci/jai_imageio/4.5-SNAPSHOT/jai_imageio-4.5-20130314.084321-110.pom
Parsing /data/devel/jenkins/.m2/repository/loci/lwf-stubs/4.5-SNAPSHOT/lwf-stubs-4.5-20130314.084441-109.pom
Parsing /data/devel/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.pom
Parsing /data/devel/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.pom
Parsing /data/devel/jenkins/.m2/repository/org/jfree/jcommon/1.0.17/jcommon-1.0.17.pom
Parsing /data/devel/jenkins/.m2/repository/org/jfree/jfreechart/1.0.14/jfreechart-1.0.14.pom
Parsing /data/devel/jenkins/.m2/repository/javax/servlet/servlet-api/2.5/servlet-api-2.5.pom
Parsing /data/devel/jenkins/.m2/repository/com/lowagie/itext/2.1.5/itext-2.1.5.pom
Parsing /data/devel/jenkins/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.pom
Parsing /data/devel/jenkins/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.pom
Parsing /data/devel/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.pom
Parsing /data/devel/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.pom
Parsing /data/devel/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.pom
Parsing /data/devel/jenkins/.m2/repository/loci/loci_plugins/4.5-SNAPSHOT/loci_plugins-4.5-20130314.084620-106.pom
Parsing /data/devel/jenkins/.m2/repository/loci/bio-formats/4.5-SNAPSHOT/bio-formats-4.5-20130314.084550-107.pom
Parsing /data/devel/jenkins/.m2/repository/loci/mdbtools-java/4.5-SNAPSHOT/mdbtools-java-4.5-20130314.084338-110.pom
Parsing /data/devel/jenkins/.m2/repository/loci/metakit/4.5-SNAPSHOT/metakit-4.5-20130314.084536-107.pom
Parsing /data/devel/jenkins/.m2/repository/loci/poi-loci/4.5-SNAPSHOT/poi-loci-4.5-20130314.084426-110.pom
Parsing /data/devel/jenkins/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.pom
Parsing /data/devel/jenkins/.m2/repository/org/apache/commons/commons-parent/5/commons-parent-5.pom
Parsing /data/devel/jenkins/.m2/repository/edu/ucar/netcdf/4.0.03/netcdf-4.0.03.pom
Descriptor_based_registration not up-to-date because of 3D_Viewer
Fiji_Plugins not up-to-date because of VIB-lib
Compiling 33 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij-core/2.0.0-SNAPSHOT/ij-core-2.0.0-20130314.040424-969.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/org/scijava/scijava-common/1.0.0-SNAPSHOT/scijava-common-1.0.0-20130313.202850-13.jar:/data/devel/jenkins/.m2/repository/net/java/sezpoz/sezpoz/1.9/sezpoz-1.9.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Rounded_Rectangle.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Binary_to_Point_Selection.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/selection/Select_Bounding_Box.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta_Clipboard.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/color/Convert_Red_To_Magenta.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Linear_Gradient.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/drawing/Radial_Gradient.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/Shape_Index_Map.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/geom/AreaCalculations.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/help/Context_Help.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/CompositeConverter2.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Dynamic_Reslice.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Radial_Reslice.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/stacks/Hyperstack_rearranger.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/denoise/ROF_Denoise.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/util/RadiusNeighborSearch.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Fiji_Uploader.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/util/KDTree.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Circle_Fitter.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NNearestNeighborSearch.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/util/TestKDTree.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/util/CurrentSlice.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/util/DistanceComparator.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/NonLeaf.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Leaf.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/Node.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/util/node/SimpleNode.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/util/Recent_Commands.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/util/RedirectErrAndOut.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/util/NearestNeighborSearch.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/EDT.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/fiji/process3d/SEDT.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij-core/2.0.0-SNAPSHOT/ij-core-2.0.0-20130314.040424-969.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/org/scijava/scijava-common/1.0.0-SNAPSHOT/scijava-common-1.0.0-20130313.202850-13.jar:/data/devel/jenkins/.m2/repository/net/java/sezpoz/sezpoz/1.9/sezpoz-1.9.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
SPIM_Opener not up-to-date because of fiji-lib
Compiling 16 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/OpenerGenericDialog.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMVirtualStack.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/Count_Files.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/Combine_SPIM_Projects.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIM_Opener.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/DoubleSlider.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/XMLReader.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMStack.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/MaximumProjector.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMRegularStack.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/SPIMExperiment.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/Check_Directories.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/Rename.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/Projector.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/MinimumProjector.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
SPIM_Registration not up-to-date because of 3D_Viewer
Compiling 146 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/target/classes:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Viewer/target/3D_Viewer-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/target/Fiji_Plugins-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/target/SPIM_Opener-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar:/data/devel/jenkins/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar:/data/devel/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij-core/2.0.0-SNAPSHOT/ij-core-2.0.0-20130314.040424-969.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-io/2.0.0-SNAPSHOT/imglib-io-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/com/lowagie/itext/2.1.5/itext-2.1.5.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/data/devel/jenkins/.m2/repository/loci/jai_imageio/4.5-SNAPSHOT/jai_imageio-4.5-20130314.084321-110.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.jar:/data/devel/jenkins/.m2/repository/org/jfree/jcommon/1.0.17/jcommon-1.0.17.jar:/data/devel/jenkins/.m2/repository/org/jfree/jfreechart/1.0.14/jfreechart-1.0.14.jar:/data/devel/jenkins/.m2/repository/net/java/dev/jna/jna/3.2.7/jna-3.2.7.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/data/devel/jenkins/.m2/repository/loci/loci-common/4.5-SNAPSHOT/loci-common-4.5-20130314.084606-107.jar:/data/devel/jenkins/.m2/repository/loci/loci-legacy/4.5-SNAPSHOT/loci-legacy-4.5-20130314.084403-104.jar:/data/devel/jenkins/.m2/repository/loci/lwf-stubs/4.5-SNAPSHOT/lwf-stubs-4.5-20130314.084441-109.jar:/data/devel/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/data/devel/jenkins/.m2/repository/mpicbg/mpicbg/0.6.0-SNAPSHOT/mpicbg-0.6.0-20130312.161135-7.jar:/data/devel/jenkins/.m2/repository/loci/ome-xml/4.5-SNAPSHOT/ome-xml-4.5-20130314.084453-109.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.jar:/data/devel/jenkins/.m2/repository/loci/scifio/4.5-SNAPSHOT/scifio-4.5-20130314.084511-108.jar:/data/devel/jenkins/.m2/repository/loci/scifio-devel/4.5-SNAPSHOT/scifio-devel-4.5-20130314.084351-104.jar:/data/devel/jenkins/.m2/repository/org/scijava/scijava-common/1.0.0-SNAPSHOT/scijava-common-1.0.0-20130313.202850-13.jar:/data/devel/jenkins/.m2/repository/javax/servlet/servlet-api/2.5/servlet-api-2.5.jar:/data/devel/jenkins/.m2/repository/net/java/sezpoz/sezpoz/1.9/sezpoz-1.9.jar:/data/devel/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar:/data/devel/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar:/data/devel/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.jar:/data/devel/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/SPIMRegistrationAbstract.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Apply_External_Transformation.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/MouseListenerTimelapse.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/RegistrationStatistics.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/FileOpenMenuEntry.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/TimeLapseDisplay.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/timelapsedisplay/GraphFrame.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Regtest.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Bead_Registration.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Multi_View_Fusion.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/fiji/plugin/Multi_View_Deconvolution.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/SPIM_Registration_File.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/SPIM_Registration.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/AbstractPointDescriptor.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/SquareDistance.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/SimilarityMeasure.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/LinearDistance.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/similarity/ManhattanDistance.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/exception/NoSuitablePointsException.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/LocalCoordinateSystemPointDescriptor.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/SimplePointDescriptor.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/SimpleMatcher.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/Quaternion.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/ModelPriorSubsetMatcher.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/Matcher.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/SubsetMatcher.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/matcher/ModelPriorMatcher.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/test/VirtualPointNode.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/test/TestPointDescriptor.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/test/PointNode.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/LinkedPoint.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/ModelPointDescriptor.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/FixedModel.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantSimilarityModel3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantFixedModel.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantRigidModel3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/RigidModelOld3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantAffineModel3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantRigidModel2D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/pointdescriptor/model/TranslationInvariantModel.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/simulation/SimulateBeadImage.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/ClusterReconstruction.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution/LucyRichardsonFFT.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution/ExtractPSF.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution/LucyRichardsonMultiViewDeconvolution.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/Block.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/BayesMVDeconvolution.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/CUDATools.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/Deconvolver.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/CUDAConvolution.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFT.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRFFTThreads.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/AdjustInput.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/postprocessing/deconvolution2/LRInput.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/preprocessing/AutomaticAngleSetup.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/XMLFunctions.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/TextFileAccess.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/IOFunctions.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserGeneral.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserException.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserObject.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ImgLibSaver.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/SPIMConfiguration.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ParsePattern.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ProgramConfiguration.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/io/ConfigurationParserSPIM.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/TileConfigurationPhaseCorrelation.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/PointMatchGeneric.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/TileSPIM.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/TileConfigurationSPIM.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/Java3d.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/mpicbg/SketchTikZFileObject.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/VisualizationSketchTikZ.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/VisualizationFunctions.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/VisualizeBeads.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/Motion3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/BeadTransformGroup.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/Viewer3dFunctions.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vis3d/PreviewRegistration.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/descriptor/CoordSystem3d.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/descriptor/CoordSystemSecure3d.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/descriptor/SparseCorrespondenceExtraction.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/descriptor/ModelBased3d.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/descriptor/CorrespondenceExtraction.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionView.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/AbstractDetection.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionSegmentation.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionStructure.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionIdentification.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/DetectionRegistration.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/detection/Detection.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/ViewErrorPairWise.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/GlobalErrorStatisticsImpl.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/GlobalErrorStatistics.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/error/ViewErrorStatistics.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/BeadSegmentation.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/BeadRegistration.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/BeadIdentification.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/Bead.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/BeadStructure.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/RejectStatistics.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/LaPlaceFunctions.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/bead/laplace/DoGMaximum.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/ViewStructure.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/threshold/ConnectedComponent.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/threshold/ComponentProperties.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/segmentation/NucleusStructure.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/segmentation/Nucleus.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/segmentation/NucleusIdentification.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/segmentation/NucleiConfiguration.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/registration/ViewDataBeads.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/Reconstruction.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/GaussContent.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/MappingFusionSequential.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/MappingFusionParalellMaxWeight.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/SPIMImageFusion.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/IsolatedPixelWeightenerFactory.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/EntropyFastFactory.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/IsolatedPixelWeightener.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/entropy/EntropyFloatArray3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/entropy/Entropy.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/CombinedPixelWeightenerFactory.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/GaussContentFactory.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/EntropyFast.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/BlendingFactory.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/MappingFusionParalell.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/BlendingSimpleFactory.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/BlendingSimple.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/Blending.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/MappingFusionSequentialDifferentOutput.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/FusionControl.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/CombinedPixelWeightener.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/fusion/PreDeconvolutionFusion.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/segmentation/InteractiveDoG.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/FastMatrix.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/JacobiDouble.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Triangle.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/FastMatrixN.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Plane.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Line.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/spim/vib/math3d/Point3d.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/util/TransformUtils.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/ICP.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/PointMatchIdentification.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/mpicbg/icp/SimplePointMatchIdentification.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/src/main/java/MultiChannel_SPIM_Registration.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/target/classes:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Viewer/target/3D_Viewer-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/target/Fiji_Plugins-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/target/SPIM_Opener-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar:/data/devel/jenkins/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar:/data/devel/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij-core/2.0.0-SNAPSHOT/ij-core-2.0.0-20130314.040424-969.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-io/2.0.0-SNAPSHOT/imglib-io-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/com/lowagie/itext/2.1.5/itext-2.1.5.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/data/devel/jenkins/.m2/repository/loci/jai_imageio/4.5-SNAPSHOT/jai_imageio-4.5-20130314.084321-110.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.jar:/data/devel/jenkins/.m2/repository/org/jfree/jcommon/1.0.17/jcommon-1.0.17.jar:/data/devel/jenkins/.m2/repository/org/jfree/jfreechart/1.0.14/jfreechart-1.0.14.jar:/data/devel/jenkins/.m2/repository/net/java/dev/jna/jna/3.2.7/jna-3.2.7.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/data/devel/jenkins/.m2/repository/loci/loci-common/4.5-SNAPSHOT/loci-common-4.5-20130314.084606-107.jar:/data/devel/jenkins/.m2/repository/loci/loci-legacy/4.5-SNAPSHOT/loci-legacy-4.5-20130314.084403-104.jar:/data/devel/jenkins/.m2/repository/loci/lwf-stubs/4.5-SNAPSHOT/lwf-stubs-4.5-20130314.084441-109.jar:/data/devel/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/data/devel/jenkins/.m2/repository/mpicbg/mpicbg/0.6.0-SNAPSHOT/mpicbg-0.6.0-20130312.161135-7.jar:/data/devel/jenkins/.m2/repository/loci/ome-xml/4.5-SNAPSHOT/ome-xml-4.5-20130314.084453-109.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.jar:/data/devel/jenkins/.m2/repository/loci/scifio/4.5-SNAPSHOT/scifio-4.5-20130314.084511-108.jar:/data/devel/jenkins/.m2/repository/loci/scifio-devel/4.5-SNAPSHOT/scifio-devel-4.5-20130314.084351-104.jar:/data/devel/jenkins/.m2/repository/org/scijava/scijava-common/1.0.0-SNAPSHOT/scijava-common-1.0.0-20130313.202850-13.jar:/data/devel/jenkins/.m2/repository/javax/servlet/servlet-api/2.5/servlet-api-2.5.jar:/data/devel/jenkins/.m2/repository/net/java/sezpoz/sezpoz/1.9/sezpoz-1.9.jar:/data/devel/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar:/data/devel/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar:/data/devel/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.jar:/data/devel/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Stitching_ not up-to-date because of Fiji_Plugins
Compiling 59 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/target/Fiji_Plugins-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/loci/bio-formats/4.5-SNAPSHOT/bio-formats-4.5-20130314.084550-107.jar:/data/devel/jenkins/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.jar:/data/devel/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij-core/2.0.0-SNAPSHOT/ij-core-2.0.0-20130314.040424-969.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/loci/jai_imageio/4.5-SNAPSHOT/jai_imageio-4.5-20130314.084321-110.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/data/devel/jenkins/.m2/repository/loci/loci-legacy/4.5-SNAPSHOT/loci-legacy-4.5-20130314.084403-104.jar:/data/devel/jenkins/.m2/repository/loci/loci_plugins/4.5-SNAPSHOT/loci_plugins-4.5-20130314.084620-106.jar:/data/devel/jenkins/.m2/repository/log4j/log4j/1.2.14/log4j-1.2.14.jar:/data/devel/jenkins/.m2/repository/loci/lwf-stubs/4.5-SNAPSHOT/lwf-stubs-4.5-20130314.084441-109.jar:/data/devel/jenkins/.m2/repository/loci/mdbtools-java/4.5-SNAPSHOT/mdbtools-java-4.5-20130314.084338-110.jar:/data/devel/jenkins/.m2/repository/loci/metakit/4.5-SNAPSHOT/metakit-4.5-20130314.084536-107.jar:/data/devel/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/data/devel/jenkins/.m2/repository/mpicbg/mpicbg/0.6.0-SNAPSHOT/mpicbg-0.6.0-20130312.161135-7.jar:/data/devel/jenkins/.m2/repository/edu/ucar/netcdf/4.0.03/netcdf-4.0.03.jar:/data/devel/jenkins/.m2/repository/loci/ome-xml/4.5-SNAPSHOT/ome-xml-4.5-20130314.084453-109.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/loci/poi-loci/4.5-SNAPSHOT/poi-loci-4.5-20130314.084426-110.jar:/data/devel/jenkins/.m2/repository/loci/scifio/4.5-SNAPSHOT/scifio-4.5-20130314.084511-108.jar:/data/devel/jenkins/.m2/repository/loci/scifio-devel/4.5-SNAPSHOT/scifio-devel-4.5-20130314.084351-104.jar:/data/devel/jenkins/.m2/repository/org/scijava/scijava-common/1.0.0-SNAPSHOT/scijava-common-1.0.0-20130313.202850-13.jar:/data/devel/jenkins/.m2/repository/net/java/sezpoz/sezpoz/1.9/sezpoz-1.9.jar:/data/devel/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/Stitch_Many_Images.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/Stitch_Image_Collection.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/Stitching_2D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/plugin/Stitching_Grid.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/plugin/Stitching_Pairwise.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/plugin/GridType.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/TextFileAccess.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/CollectionStitchingImgLib.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/ComparePair.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/Peak.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/TileConfigurationStitching.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/ImagePlusTimePoint.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/PairWiseStitchingResult.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/PointMatchStitching.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/Fusion.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/MinPixelFusion.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/MedianPixelFusion.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/OverlayFusion.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/MaxPixelFusion.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/PixelFusion.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/AveragePixelFusion.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/BlendingPixelFusion.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/fusion/ImageInterpolation.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/GlobalOptimization.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/ImageCollectionElement.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/StitchingParameters.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/mpicbg/stitching/PairWiseStitchingImgLib.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/Quicksortable.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/Point2D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/CommonFunctions.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/CrossCorrelationResult3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/FloatArray.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/FloatArray3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/OverlapProperties.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/ImageInformation.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/FloatArray2D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/Point3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/CrossCorrelationResult2D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/model/TranslationModel3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/model/ErrorStatistic.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/model/Point.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/model/PointMatch.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/model/PaintInvertibleCoordinateTransformThread.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/model/Model.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/model/CoordinateTransform.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/model/InvertibleModel.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/model/Tile.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/model/TileConfiguration.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/model/TranslationModel2D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/model/InvertibleCoordinateTransform.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/model/NotEnoughDataPointsException.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/model/NoninvertibleModelException.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/stitching/GridLayout.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/Stitch_Image_Grid.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/Stitch_Multiple_Series_File.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/Stitch_Image_Directory.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/DeltaVision_Converter.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/Stitching_3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/src/main/java/Stitch_Image_Grid_Sequence.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/target/Fiji_Plugins-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/loci/bio-formats/4.5-SNAPSHOT/bio-formats-4.5-20130314.084550-107.jar:/data/devel/jenkins/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.jar:/data/devel/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij-core/2.0.0-SNAPSHOT/ij-core-2.0.0-20130314.040424-969.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/loci/jai_imageio/4.5-SNAPSHOT/jai_imageio-4.5-20130314.084321-110.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/data/devel/jenkins/.m2/repository/loci/loci-legacy/4.5-SNAPSHOT/loci-legacy-4.5-20130314.084403-104.jar:/data/devel/jenkins/.m2/repository/loci/loci_plugins/4.5-SNAPSHOT/loci_plugins-4.5-20130314.084620-106.jar:/data/devel/jenkins/.m2/repository/log4j/log4j/1.2.14/log4j-1.2.14.jar:/data/devel/jenkins/.m2/repository/loci/lwf-stubs/4.5-SNAPSHOT/lwf-stubs-4.5-20130314.084441-109.jar:/data/devel/jenkins/.m2/repository/loci/mdbtools-java/4.5-SNAPSHOT/mdbtools-java-4.5-20130314.084338-110.jar:/data/devel/jenkins/.m2/repository/loci/metakit/4.5-SNAPSHOT/metakit-4.5-20130314.084536-107.jar:/data/devel/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/data/devel/jenkins/.m2/repository/mpicbg/mpicbg/0.6.0-SNAPSHOT/mpicbg-0.6.0-20130312.161135-7.jar:/data/devel/jenkins/.m2/repository/edu/ucar/netcdf/4.0.03/netcdf-4.0.03.jar:/data/devel/jenkins/.m2/repository/loci/ome-xml/4.5-SNAPSHOT/ome-xml-4.5-20130314.084453-109.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/loci/poi-loci/4.5-SNAPSHOT/poi-loci-4.5-20130314.084426-110.jar:/data/devel/jenkins/.m2/repository/loci/scifio/4.5-SNAPSHOT/scifio-4.5-20130314.084511-108.jar:/data/devel/jenkins/.m2/repository/loci/scifio-devel/4.5-SNAPSHOT/scifio-devel-4.5-20130314.084351-104.jar:/data/devel/jenkins/.m2/repository/org/scijava/scijava-common/1.0.0-SNAPSHOT/scijava-common-1.0.0-20130313.202850-13.jar:/data/devel/jenkins/.m2/repository/net/java/sezpoz/sezpoz/1.9/sezpoz-1.9.jar:/data/devel/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/target/classes:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Viewer/target/3D_Viewer-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/target/Fiji_Plugins-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/target/SPIM_Opener-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/target/SPIM_Registration-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/target/Stitching_-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar:/data/devel/jenkins/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar:/data/devel/jenkins/.m2/repository/loci/bio-formats/4.5-SNAPSHOT/bio-formats-4.5-20130314.084550-107.jar:/data/devel/jenkins/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.jar:/data/devel/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij-core/2.0.0-SNAPSHOT/ij-core-2.0.0-20130314.040424-969.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-io/2.0.0-SNAPSHOT/imglib-io-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/com/lowagie/itext/2.1.5/itext-2.1.5.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/data/devel/jenkins/.m2/repository/loci/jai_imageio/4.5-SNAPSHOT/jai_imageio-4.5-20130314.084321-110.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.jar:/data/devel/jenkins/.m2/repository/org/jfree/jcommon/1.0.17/jcommon-1.0.17.jar:/data/devel/jenkins/.m2/repository/org/jfree/jfreechart/1.0.14/jfreechart-1.0.14.jar:/data/devel/jenkins/.m2/repository/net/java/dev/jna/jna/3.2.7/jna-3.2.7.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/data/devel/jenkins/.m2/repository/loci/loci-common/4.5-SNAPSHOT/loci-common-4.5-20130314.084606-107.jar:/data/devel/jenkins/.m2/repository/loci/loci-legacy/4.5-SNAPSHOT/loci-legacy-4.5-20130314.084403-104.jar:/data/devel/jenkins/.m2/repository/loci/loci_plugins/4.5-SNAPSHOT/loci_plugins-4.5-20130314.084620-106.jar:/data/devel/jenkins/.m2/repository/log4j/log4j/1.2.14/log4j-1.2.14.jar:/data/devel/jenkins/.m2/repository/loci/lwf-stubs/4.5-SNAPSHOT/lwf-stubs-4.5-20130314.084441-109.jar:/data/devel/jenkins/.m2/repository/loci/mdbtools-java/4.5-SNAPSHOT/mdbtools-java-4.5-20130314.084338-110.jar:/data/devel/jenkins/.m2/repository/loci/metakit/4.5-SNAPSHOT/metakit-4.5-20130314.084536-107.jar:/data/devel/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/data/devel/jenkins/.m2/repository/mpicbg/mpicbg/0.6.0-SNAPSHOT/mpicbg-0.6.0-20130312.161135-7.jar:/data/devel/jenkins/.m2/repository/edu/ucar/netcdf/4.0.03/netcdf-4.0.03.jar:/data/devel/jenkins/.m2/repository/loci/ome-xml/4.5-SNAPSHOT/ome-xml-4.5-20130314.084453-109.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.jar:/data/devel/jenkins/.m2/repository/loci/poi-loci/4.5-SNAPSHOT/poi-loci-4.5-20130314.084426-110.jar:/data/devel/jenkins/.m2/repository/loci/scifio/4.5-SNAPSHOT/scifio-4.5-20130314.084511-108.jar:/data/devel/jenkins/.m2/repository/loci/scifio-devel/4.5-SNAPSHOT/scifio-devel-4.5-20130314.084351-104.jar:/data/devel/jenkins/.m2/repository/org/scijava/scijava-common/1.0.0-SNAPSHOT/scijava-common-1.0.0-20130313.202850-13.jar:/data/devel/jenkins/.m2/repository/javax/servlet/servlet-api/2.5/servlet-api-2.5.jar:/data/devel/jenkins/.m2/repository/net/java/sezpoz/sezpoz/1.9/sezpoz-1.9.jar:/data/devel/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar:/data/devel/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar:/data/devel/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.jar:/data/devel/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/selection/Select_Points.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/selection/DoneButtonListener.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/selection/ListListener.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/selection/SaveListener.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/selection/RemoveItemListener.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/selection/Match.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/selection/LoadListener.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/selection/ExtendedPointMatch.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/plugin/Descriptor_based_series_registration.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/plugin/Manual_Landmark_Selection.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/plugin/DescriptorParameters.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/plugin/Descriptor_based_registration.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/process/OverlayFusion.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/process/ComparePair.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/process/Matching.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/process/Particle.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/target/classes:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Viewer/target/3D_Viewer-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Fiji_Plugins/target/Fiji_Plugins-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Opener/target/SPIM_Opener-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/SPIM_Registration/target/SPIM_Registration-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Stitching_/target/Stitching_-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/bouncycastle/bcmail-jdk14/138/bcmail-jdk14-138.jar:/data/devel/jenkins/.m2/repository/bouncycastle/bcprov-jdk14/138/bcprov-jdk14-138.jar:/data/devel/jenkins/.m2/repository/loci/bio-formats/4.5-SNAPSHOT/bio-formats-4.5-20130314.084550-107.jar:/data/devel/jenkins/.m2/repository/commons-logging/commons-logging/1.1.1/commons-logging-1.1.1.jar:/data/devel/jenkins/.m2/repository/org/bushe/eventbus/1.4/eventbus-1.4.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/jgoodies/forms/1.2.1/forms-1.2.1.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47g/ij-1.47g.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij-core/2.0.0-SNAPSHOT/ij-core-2.0.0-20130314.040424-969.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib/2.0.0-SNAPSHOT/imglib-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-algorithms/2.0.0-SNAPSHOT/imglib-algorithms-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-ij/2.0.0-SNAPSHOT/imglib-ij-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/mpicbg/imglib-io/2.0.0-SNAPSHOT/imglib-io-2.0.0-20130314.051647-1197.jar:/data/devel/jenkins/.m2/repository/com/lowagie/itext/2.1.5/itext-2.1.5.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/data/devel/jenkins/.m2/repository/loci/jai_imageio/4.5-SNAPSHOT/jai_imageio-4.5-20130314.084321-110.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/.m2/repository/net/sf/squirrel-sql/thirdparty-non-maven/java-cup/0.11a/java-cup-0.11a.jar:/data/devel/jenkins/.m2/repository/org/jfree/jcommon/1.0.17/jcommon-1.0.17.jar:/data/devel/jenkins/.m2/repository/org/jfree/jfreechart/1.0.14/jfreechart-1.0.14.jar:/data/devel/jenkins/.m2/repository/net/java/dev/jna/jna/3.2.7/jna-3.2.7.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jsch/0.1.42/jsch-0.1.42.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/data/devel/jenkins/.m2/repository/loci/loci-common/4.5-SNAPSHOT/loci-common-4.5-20130314.084606-107.jar:/data/devel/jenkins/.m2/repository/loci/loci-legacy/4.5-SNAPSHOT/loci-legacy-4.5-20130314.084403-104.jar:/data/devel/jenkins/.m2/repository/loci/loci_plugins/4.5-SNAPSHOT/loci_plugins-4.5-20130314.084620-106.jar:/data/devel/jenkins/.m2/repository/log4j/log4j/1.2.14/log4j-1.2.14.jar:/data/devel/jenkins/.m2/repository/loci/lwf-stubs/4.5-SNAPSHOT/lwf-stubs-4.5-20130314.084441-109.jar:/data/devel/jenkins/.m2/repository/loci/mdbtools-java/4.5-SNAPSHOT/mdbtools-java-4.5-20130314.084338-110.jar:/data/devel/jenkins/.m2/repository/loci/metakit/4.5-SNAPSHOT/metakit-4.5-20130314.084536-107.jar:/data/devel/jenkins/.m2/repository/edu/mines/mines-jtk/20100113/mines-jtk-20100113.jar:/data/devel/jenkins/.m2/repository/mpicbg/mpicbg/0.6.0-SNAPSHOT/mpicbg-0.6.0-20130312.161135-7.jar:/data/devel/jenkins/.m2/repository/edu/ucar/netcdf/4.0.03/netcdf-4.0.03.jar:/data/devel/jenkins/.m2/repository/loci/ome-xml/4.5-SNAPSHOT/ome-xml-4.5-20130314.084453-109.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/org/pentaho/pentaho-commons/pentaho-package-manager/1.0.0/pentaho-package-manager-1.0.0.jar:/data/devel/jenkins/.m2/repository/loci/poi-loci/4.5-SNAPSHOT/poi-loci-4.5-20130314.084426-110.jar:/data/devel/jenkins/.m2/repository/loci/scifio/4.5-SNAPSHOT/scifio-4.5-20130314.084511-108.jar:/data/devel/jenkins/.m2/repository/loci/scifio-devel/4.5-SNAPSHOT/scifio-devel-4.5-20130314.084351-104.jar:/data/devel/jenkins/.m2/repository/org/scijava/scijava-common/1.0.0-SNAPSHOT/scijava-common-1.0.0-20130313.202850-13.jar:/data/devel/jenkins/.m2/repository/javax/servlet/servlet-api/2.5/servlet-api-2.5.jar:/data/devel/jenkins/.m2/repository/net/java/sezpoz/sezpoz/1.9/sezpoz-1.9.jar:/data/devel/jenkins/.m2/repository/org/slf4j/slf4j-api/1.5.10/slf4j-api-1.5.10.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar:/data/devel/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar:/data/devel/jenkins/.m2/repository/nz/ac/waikato/cms/weka/weka-dev/3.7.6/weka-dev-3.7.6.jar:/data/devel/jenkins/.m2/repository/xml-apis/xml-apis/1.3.04/xml-apis-1.3.04.jar
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Descriptor_based_registration/src/main/java/process/Particle.java:53: getID() in process.Particle cannot override getID() in mpicbg.models.Point; attempting to use incompatible return type
found   : int
required: long
	public int getID() { return id; }	
	           ^
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
1 error
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:84)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
	at imagej.build.MiniMaven.main(MiniMaven.java:133)
Build step 'Shell ausf?hren' marked build as failure
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