[ImageJ-builds] Build failed in Jenkins: Fiji-minimal #1490
jenkins at imagej.net
jenkins at imagej.net
Tue Mar 5 11:27:17 CST 2013
See <http://jenkins.imagej.net/job/Fiji-minimal/1490/>
------------------------------------------
[...truncated 867 lines...]
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:66: warning: unmappable character for encoding ASCII
* periodic nature of the histogram. The 'Direction (??)' column reports the
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:67: warning: unmappable character for encoding ASCII
* center of the gaussian. The 'Dispersion (??)' column reports the standard
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:67: warning: unmappable character for encoding ASCII
* center of the gaussian. The 'Dispersion (??)' column reports the standard
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:86: warning: unmappable character for encoding ASCII
* +90?? orientation in the Fourier transform of the image, compared to the
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:86: warning: unmappable character for encoding ASCII
* +90?? orientation in the Fourier transform of the image, compared to the
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:535: warning: unmappable character for encoding ASCII
table.addValue("Direction (??)", wrapped_bins[index]);
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:535: warning: unmappable character for encoding ASCII
table.addValue("Direction (??)", wrapped_bins[index]);
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:546: warning: unmappable character for encoding ASCII
table.addValue("Direction (??)", wrapped_bins[index]);
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:546: warning: unmappable character for encoding ASCII
table.addValue("Direction (??)", wrapped_bins[index]);
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:672: warning: unmappable character for encoding ASCII
"Direction (??)",
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:672: warning: unmappable character for encoding ASCII
"Direction (??)",
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:832: warning: unmappable character for encoding ASCII
"Direction (??)",
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:832: warning: unmappable character for encoding ASCII
"Direction (??)",
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:833: warning: unmappable character for encoding ASCII
"Dispersion (??)",
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:833: warning: unmappable character for encoding ASCII
"Dispersion (??)",
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1063: warning: unmappable character for encoding ASCII
gd.addNumericField("Histogram start", setting_bin_start , 0, 4, "??");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1063: warning: unmappable character for encoding ASCII
gd.addNumericField("Histogram start", setting_bin_start , 0, 4, "??");
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1176: warning: unmappable character for encoding ASCII
-2f, -1f, 0f, 1f, 2f } ; // That's gx, but we want to have a 90?? shift, to comply to the rest of the plugin
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1176: warning: unmappable character for encoding ASCII
-2f, -1f, 0f, 1f, 2f } ; // That's gx, but we want to have a 90?? shift, to comply to the rest of the plugin
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1204: warning: unmappable character for encoding ASCII
pixels_theta[i] = (float) (angle * 180.0 / Math.PI); // deg, -90?? to 90??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1204: warning: unmappable character for encoding ASCII
pixels_theta[i] = (float) (angle * 180.0 / Math.PI); // deg, -90?? to 90??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1204: warning: unmappable character for encoding ASCII
pixels_theta[i] = (float) (angle * 180.0 / Math.PI); // deg, -90?? to 90??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1204: warning: unmappable character for encoding ASCII
pixels_theta[i] = (float) (angle * 180.0 / Math.PI); // deg, -90?? to 90??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1582: warning: unmappable character for encoding ASCII
IJ.showStatus( String.format("Orientation: %5.1f ?? - Amont: %5.1f %%", angle, 100*amount));
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1582: warning: unmappable character for encoding ASCII
IJ.showStatus( String.format("Orientation: %5.1f ?? - Amont: %5.1f %%", angle, 100*amount));
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1765: warning: unmappable character for encoding ASCII
Line line_30deg = new Line(10.0, 412.0, 446.4102, 112.0); // 400px long line, 30??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1765: warning: unmappable character for encoding ASCII
Line line_30deg = new Line(10.0, 412.0, 446.4102, 112.0); // 400px long line, 30??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1766: warning: unmappable character for encoding ASCII
Line line_30deg2 = new Line(10.0, 312.0, 446.4102, 12.0); // 400px long line, 30??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1766: warning: unmappable character for encoding ASCII
Line line_30deg2 = new Line(10.0, 312.0, 446.4102, 12.0); // 400px long line, 30??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1767: warning: unmappable character for encoding ASCII
Line line_m60deg = new Line(10.0, 10, 300.0, 446.4102); // 400px long line, 60??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1767: warning: unmappable character for encoding ASCII
Line line_m60deg = new Line(10.0, 10, 300.0, 446.4102); // 400px long line, 60??
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1796: warning: unmappable character for encoding ASCII
System.out.println(String.format("Found maxima at %.1f, expected it at 30??.\n", center, 30));
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1796: warning: unmappable character for encoding ASCII
System.out.println(String.format("Found maxima at %.1f, expected it at 30??.\n", center, 30));
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1806: warning: unmappable character for encoding ASCII
System.out.println(String.format("Found maxima at %.1f, expected it at 30??.\n", center, 30));
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Directionality_/src/main/java/fiji/analyze/directionality/Directionality_.java:1806: warning: unmappable character for encoding ASCII
System.out.println(String.format("Found maxima at %.1f, expected it at 30??.\n", center, 30));
^
38 warnings
Compiling 30 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/imageware
Compiling 5 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/wavelets
Compiling 31 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Extended_Depth_Field
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Extended_Depth_Field/src/main/java/surfacemap/SurfaceMap3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 5 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Lasso_and_Blow_Tool
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Skeletonize3D_
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Skeletonize3D_/src/main/java/Skeletonize3D_/Skeletonize3D_.java:39: warning: unmappable character for encoding ASCII
* Image Processing, 56(6):462???478, 1994." Based on the ITK version from
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Skeletonize3D_/src/main/java/Skeletonize3D_/Skeletonize3D_.java:39: warning: unmappable character for encoding ASCII
* Image Processing, 56(6):462???478, 1994." Based on the ITK version from
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Skeletonize3D_/src/main/java/Skeletonize3D_/Skeletonize3D_.java:39: warning: unmappable character for encoding ASCII
* Image Processing, 56(6):462???478, 1994." Based on the ITK version from
^
3 warnings
Compiling 117 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/VIB_
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/VIB_/src/main/java/Biorad_Writer.java:85: warning: unmappable character for encoding ASCII
if(fi.unit.equals("??m") || fi.unit.equals("um")) fi.unit="microns";
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/VIB_/src/main/java/Biorad_Writer.java:85: warning: unmappable character for encoding ASCII
if(fi.unit.equals("??m") || fi.unit.equals("um")) fi.unit="microns";
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
2 warnings
Compiling 57 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Simple_Neurite_Tracer
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 18 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/bUnwarpJ_
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/bUnwarpJ_/src/main/java/math/BSpline.java:35: warning: unmappable character for encoding ASCII
* Ref: A. Mu??oz-Barrutia, T. Blu, M. Unser, "Least-Squares Image Resizing
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/bUnwarpJ_/src/main/java/math/BSpline.java:35: warning: unmappable character for encoding ASCII
* Ref: A. Mu??oz-Barrutia, T. Blu, M. Unser, "Least-Squares Image Resizing
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/BSplineModel.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
2 warnings
Compiling 5 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/FS_Align_TrakEM2
Compiling 66 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/imagescience
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/imagescience/src/main/java/imagescience/image/Image.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 11 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/FeatureJ_
Compiling 3 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Feature_Detection
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 38 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Archipelago
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Fiji_Archipelago/src/main/java/archipelago/compute/ArchipelagoFuture.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: deleting '/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/jars/mpicbg-0.6.0-SNAPSHOT.jar'
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/JRuby_Interpreter
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/JRuby_Interpreter/src/main/java/JRuby/JRuby_Interpreter.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Javascript_
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Javascript_/src/main/java/Javascript/Javascript_Interpreter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Jython_Interpreter
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Jython_Interpreter/src/main/java/Jython/Jython_Interpreter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 21 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/fake
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Refresh_Javas
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Refresh_Javas/src/main/java/fiji/scripting/java/Refresh_Javas.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 38 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Script_Editor
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Script_Editor/src/main/java/fiji/scripting/FileFunctions.java:9: package fiji.build.minimaven does not exist
import fiji.build.minimaven.POM;
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Script_Editor/src/main/java/fiji/scripting/FileFunctions.java:9: package fiji.build.minimaven does not exist
import fiji.build.minimaven.POM;
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Script_Editor/src/main/java/fiji/scripting/FileFunctions.java:226: cannot find symbol
symbol : class POM
location: class fiji.scripting.FileFunctions
POM pom = subFake.getPOM();
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
2 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:374)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:397)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
at imagej.build.MiniMaven.main(MiniMaven.java:133)
+ artifactId=verbose=true
+ artifactId=verbose=true
+ artifactId=verbose=true
+ eval sh /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/bin/ImageJ.sh --mini-maven -Dimagej.app.directory="/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji" -Dminimaven.updateinterval=1 -DartifactId=verbose=true install
+ sh /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/bin/ImageJ.sh --mini-maven -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji -Dminimaven.updateinterval=1 -DartifactId=verbose=true install
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Warning: deleting '/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/jars/mpicbg-20120621.jar'
Warning: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar overrides com.sun>tools
Warning: /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar overrides com.sun>tools
Warning: deleting '/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/jars/mpicbg-0.6.0-SNAPSHOT.jar'
Compiling 38 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Script_Editor
No javac.jar found (looked in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji)!
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Script_Editor/src/main/java/fiji/scripting/FileFunctions.java:9: package fiji.build.minimaven does not exist
import fiji.build.minimaven.POM;
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Script_Editor/src/main/java/fiji/scripting/FileFunctions.java:9: package fiji.build.minimaven does not exist
import fiji.build.minimaven.POM;
^
/data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/Script_Editor/src/main/java/fiji/scripting/FileFunctions.java:226: cannot find symbol
symbol : class POM
location: class fiji.scripting.FileFunctions
POM pom = subFake.getPOM();
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
2 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:374)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:397)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
at imagej.build.MiniMaven.main(MiniMaven.java:133)
Build step 'Execute shell' marked build as failure
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