[ImageJ-builds] Build failed in Jenkins: fiji-windows-full #324

Jenkins Daemon jenkins at qa.nest-initiative.org
Tue Mar 5 11:30:50 CST 2013 

See <https://qa.nest-initiative.org/job/fiji-windows-full/324/changes>

Changes:

[Johannes Schindelin] SampleImageLoader: fix compile warnings

[Johannes Schindelin] Fiji Build: delegate to ImageJ2's MiniMaven

[Johannes Schindelin] Fix compiler warnings in Fiji Build

------------------------------------------
[...truncated 429 lines...]
Compiling 35 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\level_sets
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\3D_Blob_Segmentation
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\3D_Blob_Segmentation\src\main\java\ij3d\segmentation\Blob_Segmentation_in_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\3D_Blob_Segmentation\src\main\java\ij3d\segmentation\Blob_Segmentation_in_3D.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 4 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\3D_Objects_Counter
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\3D_Objects_Counter\src\main\java\Utilities\Counter3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Action_Bar
Compiling 3 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Algorithm_Launcher
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\Algorithm_Launcher\src\main\java\AlgorithmInfo.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 6 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\AnalyzeSkeleton_
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\AnalyzeSkeleton_\src\main\java\skeleton_analysis\AnalyzeSkeleton_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Analyze_Reader_Writer
Compiling 1 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Anisotropic_Diffusion_2D
Compiling 3 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Arrow_
Compiling 2 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Auto_Threshold
Compiling 8 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\BalloonSegmentation_
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\BalloonSegmentation_\src\main\java\BalloonSegmentation_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: <https://qa.nest-initiative.org/job/fiji-windows-full/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools

Warning: <https://qa.nest-initiative.org/job/fiji-windows-full/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools

Compiling 26 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\fiji-compat
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 3 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\fiji-scripting
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\BeanShell_Interpreter
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Compiling 3 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Bug_Submitter
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Warning: could not delete '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\scijava-common-1.0.0-SNAPSHOT.jar'>
Compiling 9 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\CLI_
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\CPU_Meter
Compiling 1 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Calculator_Plus
Compiling 2 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Clojure_Interpreter
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\Clojure_Interpreter\src\main\java\Clojure\Clojure_Interpreter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 42 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Colocalisation_Analysis
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\Colocalisation_Analysis\src\main\java\results\SingleWindowDisplay.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Color_Histogram
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\Color_Histogram\src\main\java\ColorHistogram_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 4 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Color_Inspector_3D
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\Color_Inspector_3D\src\main\java\Color_Inspector_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Colour_Deconvolution
Compiling 8 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\CorrectBleach_
Compiling 33 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Fiji_Plugins
C:\jenkins\workspace\fiji-windows-full\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\Shape_Index_Map.java:17: warning: unmappable character for encoding Cp1252
 * curvature scales,� Image Vision Comput, vol. 10, no. 8,
                      ^
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\Fiji_Plugins\src\main\java\Retinex_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\SPIM_Opener
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 146 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\SPIM_Registration
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 59 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Stitching_
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Descriptor_based_registration
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20111128.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-0.6.0-SNAPSHOT.jar'>
Compiling 1 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Dichromacy_
Compiling 1 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Differentials_
Compiling 1 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Directionality_
Compiling 30 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\imageware
Compiling 5 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\wavelets
Compiling 31 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Extended_Depth_Field
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\Extended_Depth_Field\src\main\java\surfacemap\SurfaceMap3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 5 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Lasso_and_Blow_Tool
Compiling 1 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Skeletonize3D_
Compiling 117 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\VIB_
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
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Compiling 57 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Simple_Neurite_Tracer
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 18 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\bUnwarpJ_
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\bUnwarpJ_\src\main\java\bunwarpj\BSplineModel.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 5 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\FS_Align_TrakEM2
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20111128.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-0.6.0-SNAPSHOT.jar'>
Compiling 66 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\imagescience
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\imagescience\src\main\java\imagescience\image\Image.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 11 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\FeatureJ_
Compiling 3 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Feature_Detection
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 38 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Fiji_Archipelago
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\Fiji_Archipelago\src\main\java\archipelago\compute\ArchipelagoFuture.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20111128.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-0.6.0-SNAPSHOT.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20111128.jar'>
Compiling 2 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\JRuby_Interpreter
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\JRuby_Interpreter\src\main\java\JRuby\JRuby_Interpreter.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Javascript_
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\Javascript_\src\main\java\Javascript\Javascript_Interpreter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Jython_Interpreter
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\Jython_Interpreter\src\main\java\Jython\Jython_Interpreter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 21 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\fake
Compiling 2 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Refresh_Javas
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\Refresh_Javas\src\main\java\fiji\scripting\java\Refresh_Javas.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 38 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Script_Editor
C:\jenkins\workspace\fiji-windows-full\src-plugins\Script_Editor\src\main\java\fiji\scripting\FileFunctions.java:9: package fiji.build.minimaven does not exist
import fiji.build.minimaven.POM;
                           ^
C:\jenkins\workspace\fiji-windows-full\src-plugins\Script_Editor\src\main\java\fiji\scripting\FileFunctions.java:9: package fiji.build.minimaven does not exist
import fiji.build.minimaven.POM;
                           ^
C:\jenkins\workspace\fiji-windows-full\src-plugins\Script_Editor\src\main\java\fiji\scripting\FileFunctions.java:226: cannot find symbol
symbol  : class POM
location: class fiji.scripting.FileFunctions
						POM pom = subFake.getPOM();
						^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
2 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:374)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:397)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
	at imagej.build.MiniMaven.main(MiniMaven.java:133)
+ for name in '"$@"'
+ case "$name" in
+ artifactId=verbose=true
+ artifactId=verbose=true
+ artifactId=verbose=true
+ case "$name" in
+ eval sh /c/jenkins/workspace/fiji-windows-full/bin/ImageJ.sh --mini-maven '-Dimagej.app.directory="/c/jenkins/workspace/fiji-windows-full" -Dminimaven.updateinterval=1' -DartifactId=verbose=true install
++ sh /c/jenkins/workspace/fiji-windows-full/bin/ImageJ.sh --mini-maven -Dimagej.app.directory=/c/jenkins/workspace/fiji-windows-full -Dminimaven.updateinterval=1 -DartifactId=verbose=true install
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20120621.jar'>
Warning: could not delete '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20120621.jar'>
Warning: <https://qa.nest-initiative.org/job/fiji-windows-full/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools

Warning: <https://qa.nest-initiative.org/job/fiji-windows-full/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools

Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20111128.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20120621.jar'>
Warning: could not delete '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20120621.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-0.6.0-SNAPSHOT.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20120621.jar'>
Warning: could not delete '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20120621.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20111128.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20120621.jar'>
Warning: could not delete '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20120621.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-0.6.0-SNAPSHOT.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20120621.jar'>
Warning: could not delete '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20120621.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20111128.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20120621.jar'>
Warning: could not delete '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20120621.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-0.6.0-SNAPSHOT.jar'>
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20120621.jar'>
Warning: could not delete '<https://qa.nest-initiative.org/job/fiji-windows-full/ws/jars\mpicbg-20120621.jar'>
Compiling 38 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Script_Editor
No javac.jar found (looked in <https://qa.nest-initiative.org/job/fiji-windows-full/ws/)!>
C:\jenkins\workspace\fiji-windows-full\src-plugins\Script_Editor\src\main\java\fiji\scripting\FileFunctions.java:9: package fiji.build.minimaven does not exist
import fiji.build.minimaven.POM;
                           ^
C:\jenkins\workspace\fiji-windows-full\src-plugins\Script_Editor\src\main\java\fiji\scripting\FileFunctions.java:9: package fiji.build.minimaven does not exist
import fiji.build.minimaven.POM;
                           ^
C:\jenkins\workspace\fiji-windows-full\src-plugins\Script_Editor\src\main\java\fiji\scripting\FileFunctions.java:226: cannot find symbol
symbol  : class POM
location: class fiji.scripting.FileFunctions
						POM pom = subFake.getPOM();
						^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
2 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:374)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:397)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
	at imagej.build.MiniMaven.main(MiniMaven.java:133)
Build step 'Execute shell' marked build as failure

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