[ImageJ-builds] Build failed in Jenkins: fiji-core #661

Tue Mar 5 11:28:18 CST 2013

See <https://qa.nest-initiative.org/job/fiji-core/661/changes>

Changes:

[Johannes Schindelin] SampleImageLoader: fix compile warnings

[Johannes Schindelin] Fiji Build: delegate to ImageJ2's MiniMaven

[Johannes Schindelin] Fix compiler warnings in Fiji Build

------------------------------------------
Started by remote host 144.92.48.145
Building remotely on fc-18-i386-1 in workspace <https://qa.nest-initiative.org/job/fiji-core/ws/>
Checkout:fiji-core / <https://qa.nest-initiative.org/job/fiji-core/ws/> - hudson.remoting.Channel at 241ee2c5:fc-18-i386-1
Using strategy: Default
Last Built Revision: Revision 309d099e8d5f2ecc0f755c5d8a1326ca79d023d8 (origin/master)
Fetching changes from 1 remote Git repository
Fetching upstream changes from origin
Commencing build of Revision ef21b8cd1682bc0d79c4add93520f66ab71f9983 (origin/master)
Checking out Revision ef21b8cd1682bc0d79c4add93520f66ab71f9983 (origin/master)
Cleaning workspace
Resetting working tree
[fiji-core] $ /bin/bash /tmp/hudson7492241579052292657.sh
+ ./Build.sh -Dminimaven.updateinterval=1 -- verbose=true
Downloading sc.fiji:javac:2.0.0-SNAPSHOT
Downloading org.scijava:scijava-common:1.0.0-SNAPSHOT
Downloading net.imagej:ij-core:2.0.0-SNAPSHOT
Downloading net.imagej:ij-minimaven:2.0.0-SNAPSHOT
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Compiling 26 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib>
No javac.jar found (looked in <https://qa.nest-initiative.org/job/fiji-core/ws/)!>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 22 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/pal-optimization>
Compiling 190 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB-lib>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 121 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Viewer>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 35 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/level_sets>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Blob_Segmentation>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 4 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Objects_Counter>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Action_Bar>
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Algorithm_Launcher>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmInfo.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 6 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Analyze_Reader_Writer>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Anisotropic_Diffusion_2D>
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Arrow_>
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Auto_Threshold>
Compiling 8 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BalloonSegmentation_/src/main/java/BalloonSegmentation_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: <https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar> overrides com.sun>tools

Warning: <https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar> overrides com.sun>tools

Compiling 26 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-scripting>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/BeanShell_Interpreter>
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Bug_Submitter>
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Compiling 9 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CLI_>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CPU_Meter>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Calculator_Plus>
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Clojure_Interpreter>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Clojure_Interpreter/src/main/java/Clojure/Clojure_Interpreter.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 42 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/results/SingleWindowDisplay.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Histogram>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 4 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colour_Deconvolution>
Compiling 8 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_>
Compiling 33 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 146 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 59 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Descriptor_based_registration>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Dichromacy_>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Differentials_>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Directionality_>
Compiling 30 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/imageware>
Compiling 5 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/wavelets>
Compiling 31 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Extended_Depth_Field>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Extended_Depth_Field/src/main/java/surfacemap/SurfaceMap3D.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 5 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Lasso_and_Blow_Tool>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Skeletonize3D_>
Compiling 117 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 57 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Simple_Neurite_Tracer>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 18 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/bUnwarpJ_/src/main/java/bunwarpj/BSplineModel.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 5 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/FS_Align_TrakEM2>
Compiling 66 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/imagescience>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/imagescience/src/main/java/imagescience/image/Image.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 11 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/FeatureJ_>
Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Feature_Detection>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 38 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Archipelago>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Archipelago/src/main/java/archipelago/compute/ArchipelagoFuture.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-core/ws/jars/mpicbg-0.6.0-SNAPSHOT.jar'>
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/JRuby_Interpreter>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/JRuby_Interpreter/src/main/java/JRuby/JRuby_Interpreter.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Javascript_>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Javascript_/src/main/java/Javascript/Javascript_Interpreter.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jython_Interpreter>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Jython_Interpreter/src/main/java/Jython/Jython_Interpreter.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 21 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fake>
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Refresh_Javas>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Refresh_Javas/src/main/java/fiji/scripting/java/Refresh_Javas.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 38 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Script_Editor>
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Script_Editor/src/main/java/fiji/scripting/FileFunctions.java>:9: package fiji.build.minimaven does not exist
import fiji.build.minimaven.POM;
                           ^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Script_Editor/src/main/java/fiji/scripting/FileFunctions.java>:9: package fiji.build.minimaven does not exist
import fiji.build.minimaven.POM;
                           ^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Script_Editor/src/main/java/fiji/scripting/FileFunctions.java>:226: cannot find symbol
symbol  : class POM
location: class fiji.scripting.FileFunctions
						POM pom = subFake.getPOM();
						^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
2 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:374)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:397)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
	at imagej.build.MiniMaven.main(MiniMaven.java:133)
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-core/ws/jars/mpicbg-20120621.jar'>
Warning: <https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar> overrides com.sun>tools

Warning: <https://qa.nest-initiative.org/job/fiji-core/ws/java/linux/jdk1.6.0_24/jre/../lib/tools.jar> overrides com.sun>tools

Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-core/ws/jars/mpicbg-0.6.0-SNAPSHOT.jar'>
Compiling 38 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Script_Editor>
No javac.jar found (looked in <https://qa.nest-initiative.org/job/fiji-core/ws/)!>
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Script_Editor/src/main/java/fiji/scripting/FileFunctions.java>:9: package fiji.build.minimaven does not exist
import fiji.build.minimaven.POM;
                           ^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Script_Editor/src/main/java/fiji/scripting/FileFunctions.java>:9: package fiji.build.minimaven does not exist
import fiji.build.minimaven.POM;
                           ^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Script_Editor/src/main/java/fiji/scripting/FileFunctions.java>:226: cannot find symbol
symbol  : class POM
location: class fiji.scripting.FileFunctions
						POM pom = subFake.getPOM();
						^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
2 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:374)
	at imagej.build.minimaven.MavenProject.build(MavenProject.java:397)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
	at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
	at imagej.build.MiniMaven.main(MiniMaven.java:133)
Build step 'Execute shell' marked build as failure