[ImageJ-builds] Build failed in Jenkins: Fiji-daily #776
jenkins at imagej.net
jenkins at imagej.net
Mon Jun 17 10:49:00 CDT 2013
See <http://jenkins.imagej.net/job/Fiji-daily/776/changes>
Changes:
[Johannes Schindelin] Update the ImageJ2 submodule
------------------------------------------
[...truncated 1716 lines...]
Trying to download http://code.imagej.net/maven2/snapshots/sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
java.io.FileNotFoundException: http://code.imagej.net/maven2/snapshots/sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at imagej.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:493)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:378)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:374)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:368)
at imagej.build.minimaven.MavenProject.download(MavenProject.java:169)
at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:994)
at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:942)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:746)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:755)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:712)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:196)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:181)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:390)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:332)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:289)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
Trying to download http://maven.imagej.net/content/repositories/releases/sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
java.io.FileNotFoundException: http://maven.imagej.net/content/repositories/releases/sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at imagej.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:493)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:378)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:374)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:368)
at imagej.build.minimaven.MavenProject.download(MavenProject.java:169)
at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:994)
at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:942)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:746)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:755)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:712)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:196)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:181)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:390)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:332)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:289)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
Trying to download http://maven.imagej.net/content/repositories/releases//sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
java.io.FileNotFoundException: http://maven.imagej.net/content/repositories/releases//sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at imagej.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:493)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:378)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:374)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:368)
at imagej.build.minimaven.MavenProject.download(MavenProject.java:169)
at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:994)
at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:942)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:746)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:755)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:712)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:196)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:181)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:390)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:332)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:289)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
Trying to download http://maven.imagej.net/content/repositories/snapshots/sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
java.io.FileNotFoundException: http://maven.imagej.net/content/repositories/snapshots/sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at imagej.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:493)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:378)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:374)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:368)
at imagej.build.minimaven.MavenProject.download(MavenProject.java:169)
at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:994)
at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:942)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:746)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:755)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:712)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:196)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:181)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:390)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:332)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:289)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
Trying to download http://maven.imagej.net/content/repositories/snapshots//sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
java.io.FileNotFoundException: http://maven.imagej.net/content/repositories/snapshots//sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at imagej.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:493)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:378)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:374)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:368)
at imagej.build.minimaven.MavenProject.download(MavenProject.java:169)
at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:994)
at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:942)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:746)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:755)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:712)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:196)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:181)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:390)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:332)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:289)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
Trying to download http://maven.imagej.net/content/repositories/thirdparty/sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
java.io.FileNotFoundException: http://maven.imagej.net/content/repositories/thirdparty/sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at imagej.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:493)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:378)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:374)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:368)
at imagej.build.minimaven.MavenProject.download(MavenProject.java:169)
at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:994)
at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:942)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:746)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:755)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:712)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:196)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:181)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:390)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:332)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:289)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
Trying to download http://repo1.maven.org/maven2//sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
java.io.FileNotFoundException: http://repo1.maven.org/maven2//sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at imagej.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:493)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:378)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:374)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:368)
at imagej.build.minimaven.MavenProject.download(MavenProject.java:169)
at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:994)
at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:942)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:746)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:755)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:712)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:196)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:181)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:390)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:332)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:289)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
Trying to download https://oss.sonatype.org/content/repositories/snapshots//sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
java.io.FileNotFoundException: https://oss.sonatype.org/content/repositories/snapshots//sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:234)
at imagej.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:493)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:378)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:374)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:368)
at imagej.build.minimaven.MavenProject.download(MavenProject.java:169)
at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:994)
at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:942)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:746)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:755)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:712)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:196)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:181)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:390)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:332)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:289)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
Trying to download https://repository.jboss.org/nexus/content/repositories/thirdparty-releases/sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
java.io.FileNotFoundException: https://repository.jboss.org/nexus/content/repositories/thirdparty-releases/sc/fiji/legacy-imglib1/2.0.0-beta-7/legacy-imglib1-2.0.0-beta-7.pom.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:234)
at imagej.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:493)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:378)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:374)
at imagej.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:368)
at imagej.build.minimaven.MavenProject.download(MavenProject.java:169)
at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:994)
at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:942)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:746)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:755)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:712)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:196)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:181)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:390)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:332)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:289)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
java.io.FileNotFoundException: Could not download legacy-imglib1-2.0.0-beta-7.jar
at imagej.build.minimaven.MavenProject.download(MavenProject.java:175)
at imagej.build.minimaven.MavenProject.maybeDownloadAutomatically(MavenProject.java:994)
at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:942)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:746)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:755)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:712)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:196)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:181)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:390)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:332)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:289)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
Could not download legacy-imglib1: Could not download legacy-imglib1-2.0.0-beta-7.jar
FS_Align_TrakEM2 not up-to-date because of 3D_Viewer
Parsing /data/devel/jenkins/.m2/repository/sc/fiji/TrakEM2_/1.0b-SNAPSHOT/maven-metadata-snapshot.xml
Parsing /data/devel/jenkins/.m2/repository/sc/fiji/VectorString/1.0-SNAPSHOT/maven-metadata-snapshot.xml
Parsing /data/devel/jenkins/.m2/repository/org/apache/commons/commons-math/3.0-SNAPSHOT/maven-metadata-snapshot.xml
Lasso_and_Blow_Tool not up-to-date because of fiji-lib
Compiling 5 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Lasso_and_Blow_Tool
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Lasso_and_Blow_Tool/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47q/ij-1.47q.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Lasso_and_Blow_Tool/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Lasso_and_Blow_Tool/src/main/java/plugin/Lasso.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Lasso_and_Blow_Tool/src/main/java/plugin/Lasso_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Lasso_and_Blow_Tool/src/main/java/util/FibonacciHeap.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Lasso_and_Blow_Tool/src/main/java/util/FibonacciHeapInt.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Lasso_and_Blow_Tool/src/main/java/util/FibonacciHeapDouble.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Lasso_and_Blow_Tool/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47q/ij-1.47q.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
Parsing /data/devel/jenkins/.m2/repository/org/apache/commons/commons-math/3.0-SNAPSHOT/maven-metadata-snapshot.xml
Simple_Neurite_Tracer not up-to-date because of 3D_Viewer
Parsing /data/devel/jenkins/.m2/repository/org/apache/commons/commons-math/3.0-SNAPSHOT/maven-metadata-snapshot.xml
Skeletonize3D_ not up-to-date because 1 source files are not up-to-date (/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Skeletonize3D_/src/main/java/Skeletonize3D_/Skeletonize3D_.java)
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Skeletonize3D_
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Skeletonize3D_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47q/ij-1.47q.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Skeletonize3D_/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Skeletonize3D_/src/main/java/Skeletonize3D_/Skeletonize3D_.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/Skeletonize3D_/target/classes:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47q/ij-1.47q.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
VIB_ not up-to-date because of 3D_Viewer
Compiling 117 files in /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_
[-source, 1.5, -target, 1.5, -classpath, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/target/classes:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Viewer/target/3D_Viewer-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47q/ij-1.47q.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar:/data/devel/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar, -d, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/target/classes, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/CropEditor_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/KD_Cartoon.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/ROI_3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Show_Label_Centers.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/CollectGarbage_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Psychomorph_TEM_Reader.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/features/Surfaceness_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/features/Sigma_Palette.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/features/Hessian_CP_Measures.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/features/Tubeness_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/features/TestComputeCurvatures_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Scrollable_StackWindow.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Triangle_Algorithm.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/textureByRef/Texture_By_Ref.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/textureByRef/Texture_By_Ref_col.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/textureByRef/Volume_Editor.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Compute_Curvatures.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/FindIt_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Replace_Value.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Align_Image.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Moving_Least_Squares.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/ShowAmiraSurface_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Reslice_Z.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Implicit_Interpolate_Binary.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Visual_Grep.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Despeckle_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Biorad_Reader.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/ROIBrush_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/video/Edit_Video.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/RGB_to_CIELAB.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/stacks/ThreePaneContainer_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/stacks/Unpack_To_PNG.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/stacks/ThreePanes_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/stacks/Three_Pane_Crop.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/marchingcubes/ExportMesh_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/AmiraMeshReader_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Test_Java3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Average_Color.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/math3d/Transform_IO.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/MC_Test.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/AmiraMeshWriter_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Delaunay_Voronoi.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Fill_holes.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Two_Point_Correlation.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/IDT_Interpolate_Binary.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/EdgeDetectors_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/Fit_Sphere.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/Local_Threshold.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/Raster_Rigid.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/Show_centers.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/BatchLog_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/SegmentationViewer_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/LocalRigidRegistration_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/ElasticTransform_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/EditAmiraParameters_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/Deformable_Registration.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/TissueStatistics_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/Resample_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/DiffusionInterpol2_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/Center_Transformation.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/Relabel_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/AverageBrain_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/Average_Images.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/RigidRegistration_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/edge/Dirichlet_Edge.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/Points_Dialog.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/AugmentedLandmarkWarp_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/oldregistration/PCA_Registration.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/MaxEntQuantization_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/vib/Extract_Surface.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Seam_Remover.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/util/Mask_Of_Nearby_Points.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/util/Exposure_Blend_Two_Stacks.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/util/Just_Certain_Labels.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/util/Meshes_From_Label_File.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/util/Overlay_Registered.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/util/Average_Torsten_Results.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/util/RGB_to_Luminance.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/util/Count_Labels.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/util/Histogram_2D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/util/Find_Connected_Regions.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/util/Quantile_Based_Normalization.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/oldsegmenters/LabelThresholder_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/oldsegmenters/Segmentator_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/oldsegmenters/LabelBrush_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/oldsegmenters/LabelInterpolator_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/oldsegmenters/Segmenter_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/landmarks/Affine_From_Landmarks.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/landmarks/Bookstein_From_Landmarks.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/landmarks/Rigid_From_Landmarks.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/landmarks/Name_Points.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/Median_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/IFT_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/Find_Minima.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/Harris_Corner_Detector.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/Erode_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/Rebin_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/Gradient_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/Laplace_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/Flood_Fill.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/Plot_Dots.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/Particle_Analyzer_3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/Dilate_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/Maximum_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/Distance_Transform_3D.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/Minimum_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/FFT_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/process3d/Convolve_3d.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Bilateral_Filter.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Menu_Font.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/leica/Leica_SP_Writer.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/leica/Leica_SP_Reader.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/AmiraTableWriter_.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/VIB_Protocol.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Segmentation_Editor.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Biorad_Writer.java, /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/Rohlfing_SBA.java]
using the class path: /data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/target/classes:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/3D_Viewer/target/3D_Viewer-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/com/apple/AppleJavaExtensions/1.5/AppleJavaExtensions-1.5.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/.m2/repository/net/imagej/ij/1.47q/ij-1.47q.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core/1.5.2/j3d-core-1.5.2.jar:/data/devel/jenkins/.m2/repository/java3d/j3d-core-utils/1.5.2/j3d-core-utils-1.5.2.jar:/data/devel/jenkins/.m2/repository/jama/jama/1.0.2/jama-1.0.2.jar:/data/devel/jenkins/.m2/repository/junit/junit/4.8.1/junit-4.8.1.jar:/data/devel/jenkins/.m2/repository/com/jcraft/jzlib/1.0.7/jzlib-1.0.7.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-daily/workspace/java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar:/data/devel/jenkins/.m2/repository/java3d/vecmath/1.5.2/vecmath-1.5.2.jar
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB_/src/main/java/marchingcubes/ExportMesh_.java:35: cannot access mpicbg.imglib.type.numeric.RealType
class file for mpicbg.imglib.type.numeric.RealType not found
List mesh = triangulator.getTriangles(
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
1 error
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:444)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:375)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:398)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:375)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:398)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:332)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:327)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:289)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
Build step 'Execute shell' marked build as failure
Archiving artifacts
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