[ImageJ-builds] Build failed in Jenkins: ImageJ-launcher » master #997

jenkins at imagej.net jenkins at imagej.net
Mon Jun 3 22:08:43 CDT 2013


See <http://jenkins.imagej.net/job/ImageJ-launcher/./label=master/997/changes>

Changes:

[Mark Hiner] Converted to SCIFIO API

[Mark Hiner] Translate cell img backed data as virtual stacks

[Mark Hiner] Display (V) in title of CellImg based data views

[Mark Hiner] Display (V) in title of CellImg based data views

[Mark Hiner] Title code now works when active dataset is null

[Mark Hiner] Document pixel munging tweaks for virtual stacks

[Mark Hiner] Document pixel munging tweaks for virtual stacks

[Mark Hiner] Eliminate tracking of binary ImagePluses

[Mark Hiner] Added SourceOptimizedCompositeXYProjector

[Mark Hiner] Added PlanarCommand

[Mark Hiner] Add Dataset accessor method

[Mark Hiner] Remove old plane caching approach

[Mark Hiner] Updated scifio-devel dependency

[Mark Hiner] Remove incorrect note

[Mark Hiner] Change data type from Boolean to boolean

[Mark Hiner] Finish changing types from Boolean to boolean

[Mark Hiner] MergedRgbVirtualStack: add tests and fix bugs

[Mark Hiner] Add some documentation

[Mark Hiner] Minor code refactor

[Mark Hiner] DefaultIOService passes context to ImgOpener

[Mark Hiner] Added xyPlane methods to DatasetView

[Mark Hiner] Initial mockup of autoscale service

[Mark Hiner] Javadoc update

[Mark Hiner] AutoscaleService now working

[Mark Hiner] Make Brightness/Contrast use AutoscaleService

[Mark Hiner] Use AutoscaleService

[Mark Hiner] Eliminate warnings

[Mark Hiner] Remove unnecessary @Parameters

[Mark Hiner] Fix code that trips up javac

[Mark Hiner] Make a confidence interval autoscale method

[Mark Hiner] Fix author designation

[Mark Hiner] Improve generic constraints

[Mark Hiner] Remove warning

[Mark Hiner] Remove warnings

[Mark Hiner] Enhance testing

[Mark Hiner] Improve tests and fix pixel assignment bug

[Mark Hiner] Eliminate warnings

[Mark Hiner] Clean up some loose ends

[Mark Hiner] Fix bug in confidence interval calcs

[Mark Hiner] Improve confidence interval test code

[Mark Hiner] Enhance confidence interval autoscale code

[Mark Hiner] Fixup documentation

[Mark Hiner] Enhance confidence interval autoscale method

[Mark Hiner] Use a DataRange helper class

[Mark Hiner] Add a Default button to B&C dialog

[Mark Hiner] Added Plane/Dataset toggle to BrightnessContrast

[Mark Hiner] Fix threshold dialog initialization bug

[Mark Hiner] SaveAsImage passes context to ImgSaver

[Mark Hiner] Removed status listener setting

[Barry DeZonia] Fix exception bug with threshold overlays

[Barry DeZonia] Fix a threshold display bug

[Barry DeZonia] Make castItem() successful with primitive types

[Barry DeZonia] Remove temp workaround

[Barry DeZonia] Support the reading of text table luts

[Barry DeZonia] Cleanup some logic in loadLUT()

[Mark Hiner] Updated dependencies for io.scif conversion

[Curtis Rueden] Update Fiji mailing lists metadata

[Curtis Rueden] Update pom-scijava to 1.44

[Curtis Rueden] StatusDispatcher: fix imports

[Curtis Rueden] Remove obsolete imglib2-io dependency

[Curtis Rueden] Fix whitespace in import sections

[Curtis Rueden] DefaultIOService: better isImageData implementation

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368K downloaded  (cpptasks-parallel-1.1.1-scijava-1.jar)
[DEBUG] Using Wagon implementation lightweight from default mapping for protocol http
[DEBUG]   Artifact resolved
[DEBUG] Unable to locate resource in repository
org.apache.maven.wagon.ResourceDoesNotExistException: Unable to locate resource in repository
	at org.apache.maven.wagon.providers.http.LightweightHttpWagon.fillInputData(LightweightHttpWagon.java:139)
	at org.apache.maven.wagon.StreamWagon.getInputStream(StreamWagon.java:116)
	at org.apache.maven.wagon.StreamWagon.getIfNewer(StreamWagon.java:88)
	at org.apache.maven.wagon.StreamWagon.get(StreamWagon.java:61)
	at org.apache.maven.artifact.manager.DefaultWagonManager.getRemoteFile(DefaultWagonManager.java:546)
	at org.apache.maven.artifact.manager.DefaultWagonManager.getArtifact(DefaultWagonManager.java:427)
	at org.apache.maven.artifact.manager.DefaultWagonManager.getArtifact(DefaultWagonManager.java:382)
	at org.apache.maven.artifact.resolver.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:216)
	at org.apache.maven.artifact.resolver.DefaultArtifactResolver.resolve(DefaultArtifactResolver.java:90)
	at org.apache.maven.artifact.resolver.DefaultArtifactResolver$ResolveArtifactTask.resolveArtifact(DefaultArtifactResolver.java:456)
	at org.apache.maven.artifact.resolver.DefaultArtifactResolver$ResolveArtifactTask.run(DefaultArtifactResolver.java:433)
	at hidden.edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1061)
	at hidden.edu.emory.mathcs.backport.java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:575)
	at java.lang.Thread.run(Thread.java:662)
Caused by: java.io.FileNotFoundException: http://maven.imagej.net/content/repositories/thirdparty/commons-io/commons-io/2.4/commons-io-2.4.jar
	at sun.reflect.GeneratedConstructorAccessor8.newInstance(Unknown Source)
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
	at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
	at sun.net.www.protocol.http.HttpURLConnection$6.run(HttpURLConnection.java:1491)
	at java.security.AccessController.doPrivileged(Native Method)
	at sun.net.www.protocol.http.HttpURLConnection.getChainedException(HttpURLConnection.java:1485)
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1139)
	at org.apache.maven.wagon.providers.http.LightweightHttpWagon.fillInputData(LightweightHttpWagon.java:122)
	... 13 more
Caused by: java.io.FileNotFoundException: http://maven.imagej.net/content/repositories/thirdparty/commons-io/commons-io/2.4/commons-io-2.4.jar
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
	at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:379)
	at org.apache.maven.wagon.providers.http.LightweightHttpWagon.fillInputData(LightweightHttpWagon.java:115)
	... 13 more
[DEBUG] Using Wagon implementation lightweight from default mapping for protocol http
[INFO] Unable to find resource 'commons-io:commons-io:jar:2.4' in repository imagej.thirdparty (http://maven.imagej.net/content/repositories/thirdparty)
[DEBUG] Skipping disabled repository apache.snapshots
[DEBUG] Trying repository central
[DEBUG] Using Wagon implementation lightweight from default mapping for protocol http
[DEBUG] Checking for pre-existing User-Agent configuration.
[DEBUG] Adding User-Agent configuration.
[DEBUG] Connecting to repository: 'central' with url: 'http://repo1.maven.org/maven2'.
Downloading: http://repo1.maven.org/maven2/commons-io/commons-io/2.4/commons-io-2.4.jar
[DEBUG] attempting to create parent directories for destination: commons-io-2.4.jar.tmp
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180K downloaded  (commons-io-2.4.jar)
[DEBUG] Using Wagon implementation lightweight from default mapping for protocol http
[DEBUG]   Artifact resolved
[DEBUG]  The following artifacts were filtered out for plugin: org.apache.maven.plugins:nar-maven-plugin:3.0.0-scijava-1 because they're already in the core of Maven:

org.apache.maven:maven-plugin-api:jar:2.0.9:runtime
org.apache.maven:maven-project:jar:2.0.9:runtime
org.apache.maven:maven-artifact:jar:2.0.9:runtime
org.apache.maven:maven-model:jar:2.0.9:runtime
org.apache.maven:maven-toolchain:jar:2.2.1:runtime
org.apache.maven:maven-core:jar:2.2.1:runtime
org.codehaus.plexus:plexus-container-default:jar:1.5.4:runtime

These will use the artifact files already in the core ClassRealm instead, to allow them to be included in PluginDescriptor.getArtifacts().


[DEBUG] Looking up plugin component: org.apache.maven.artifact.handler.ArtifactHandler with hint: nar
[INFO] ------------------------------------------------------------------------
[INFO] Building ImageJ Launcher
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[DEBUG] Error looking up lifecycle mapping to retrieve optional mojos. Lifecycle ID: default. Error: Component descriptor cannot be found in the component repository: org.apache.maven.lifecycle.mapping.LifecycleMappingnar.
org.codehaus.plexus.component.repository.exception.ComponentLookupException: Component descriptor cannot be found in the component repository: org.apache.maven.lifecycle.mapping.LifecycleMappingnar.
	at org.codehaus.plexus.DefaultPlexusContainer.lookup(DefaultPlexusContainer.java:323)
	at org.codehaus.plexus.DefaultPlexusContainer.lookup(DefaultPlexusContainer.java:440)
	at org.apache.maven.execution.MavenSession.lookup(MavenSession.java:138)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.findOptionalMojosForLifecycle(DefaultLifecycleExecutor.java:1404)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.bindLifecycleForPackaging(DefaultLifecycleExecutor.java:1294)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.constructLifecycleMappings(DefaultLifecycleExecutor.java:1275)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:534)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:387)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:348)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:180)
	at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:328)
	at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:138)
	at org.apache.maven.cli.MavenCli.main(MavenCli.java:362)
	at org.apache.maven.cli.compat.CompatibleMain.main(CompatibleMain.java:60)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
	at org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
	at org.codehaus.classworlds.Launcher.mainWithExitCode(Launcher.java:430)
	at org.codehaus.classworlds.Launcher.main(Launcher.java:375)
[INFO] artifact org.apache.maven.plugins:maven-nar-plugin: checking for updates from mvnplugins.fusesource.org
[DEBUG] Using Wagon implementation lightweight from default mapping for protocol http
[DEBUG] Checking for pre-existing User-Agent configuration.
[DEBUG] Adding User-Agent configuration.
[DEBUG] Connecting to repository: 'mvnplugins.fusesource.org' with url: 'http://mvnplugins.fusesource.org/repo/release'.
[DEBUG] Using Wagon implementation lightweight from default mapping for protocol http
[DEBUG] repository metadata for: 'artifact org.apache.maven.plugins:maven-nar-plugin' could not be found on repository: mvnplugins.fusesource.org
[INFO] artifact org.apache.maven.plugins:maven-nar-plugin: checking for updates from imagej.releases
[DEBUG] Using Wagon implementation lightweight from default mapping for protocol http
[DEBUG] Checking for pre-existing User-Agent configuration.
[DEBUG] Adding User-Agent configuration.
[DEBUG] Connecting to repository: 'imagej.releases' with url: 'http://maven.imagej.net/content/repositories/releases'.
[DEBUG] Using Wagon implementation lightweight from default mapping for protocol http
[DEBUG] repository metadata for: 'artifact org.apache.maven.plugins:maven-nar-plugin' could not be found on repository: imagej.releases
[INFO] artifact org.apache.maven.plugins:maven-nar-plugin: checking for updates from imagej.snapshots
[DEBUG] Using Wagon implementation lightweight from default mapping for protocol http
[DEBUG] Checking for pre-existing User-Agent configuration.
[DEBUG] Adding User-Agent configuration.
[DEBUG] Connecting to repository: 'imagej.snapshots' with url: 'http://maven.imagej.net/content/repositories/snapshots'.
[DEBUG] Using Wagon implementation lightweight from default mapping for protocol http
[INFO] artifact org.apache.maven.plugins:maven-nar-plugin: checking for updates from imagej.thirdparty
[DEBUG] Using Wagon implementation lightweight from default mapping for protocol http
[DEBUG] Checking for pre-existing User-Agent configuration.
[DEBUG] Adding User-Agent configuration.
[DEBUG] Connecting to repository: 'imagej.thirdparty' with url: 'http://maven.imagej.net/content/repositories/thirdparty'.
[DEBUG] Using Wagon implementation lightweight from default mapping for protocol http
[DEBUG] maven-nar-plugin: resolved to version 2.1-20120403 from repository imagej.thirdparty
[DEBUG] Retrieving parent-POM: org.apache.maven.plugins:maven-plugins:pom:18 for project: null:maven-nar-plugin:maven-plugin:2.1-20120403 from the repository.
[DEBUG] Retrieving parent-POM: org.apache.maven.plugins:maven-plugins:pom:19 for project: null:maven-resources-plugin:maven-plugin:2.5 from the repository.
[DEBUG] Retrieving parent-POM: org.apache.maven:maven-parent:pom:19 for project: org.apache.maven.plugins:maven-plugins:pom:19 from the repository.
[DEBUG] Retrieving parent-POM: org.apache.maven.plugins:maven-plugins:pom:22 for project: null:maven-compiler-plugin:maven-plugin:2.5 from the repository.
[DEBUG] Retrieving parent-POM: org.apache.maven:maven-parent:pom:21 for project: org.apache.maven.plugins:maven-plugins:pom:22 from the repository.
[DEBUG] Retrieving parent-POM: org.apache:apache:pom:10 for project: org.apache.maven:maven-parent:pom:21 from the repository.
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Required goal not found: org.apache.maven.plugins:maven-nar-plugin:nar-process-libraries in org.apache.maven.plugins:maven-nar-plugin:2.1-20120403
[INFO] ------------------------------------------------------------------------
[DEBUG] Trace
org.apache.maven.BuildFailureException: Required goal not found: org.apache.maven.plugins:maven-nar-plugin:nar-process-libraries in org.apache.maven.plugins:maven-nar-plugin:2.1-20120403
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.getMojoDescriptor(DefaultLifecycleExecutor.java:1867)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.bindLifecycleForPackaging(DefaultLifecycleExecutor.java:1311)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.constructLifecycleMappings(DefaultLifecycleExecutor.java:1275)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:534)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:387)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:348)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:180)
	at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:328)
	at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:138)
	at org.apache.maven.cli.MavenCli.main(MavenCli.java:362)
	at org.apache.maven.cli.compat.CompatibleMain.main(CompatibleMain.java:60)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
	at org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
	at org.codehaus.classworlds.Launcher.mainWithExitCode(Launcher.java:430)
	at org.codehaus.classworlds.Launcher.main(Launcher.java:375)
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 7 seconds
[INFO] Finished at: Mon Jun 03 22:08:42 CDT 2013
[INFO] Final Memory: 28M/254M
[INFO] ------------------------------------------------------------------------
Build step 'Execute shell' marked build as failure
Archiving artifacts



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