[ImageJ-builds] Build failed in Jenkins: ImageJ-launcher » MacOSX #997

jenkins at imagej.net jenkins at imagej.net
Mon Jun 3 22:06:34 CDT 2013


See <http://jenkins.imagej.net/job/ImageJ-launcher/./label=MacOSX/997/changes>

Changes:

[Mark Hiner] Converted to SCIFIO API

[Mark Hiner] Translate cell img backed data as virtual stacks

[Mark Hiner] Display (V) in title of CellImg based data views

[Mark Hiner] Display (V) in title of CellImg based data views

[Mark Hiner] Title code now works when active dataset is null

[Mark Hiner] Document pixel munging tweaks for virtual stacks

[Mark Hiner] Document pixel munging tweaks for virtual stacks

[Mark Hiner] Eliminate tracking of binary ImagePluses

[Mark Hiner] Added SourceOptimizedCompositeXYProjector

[Mark Hiner] Added PlanarCommand

[Mark Hiner] Add Dataset accessor method

[Mark Hiner] Remove old plane caching approach

[Mark Hiner] Updated scifio-devel dependency

[Mark Hiner] Remove incorrect note

[Mark Hiner] Change data type from Boolean to boolean

[Mark Hiner] Finish changing types from Boolean to boolean

[Mark Hiner] MergedRgbVirtualStack: add tests and fix bugs

[Mark Hiner] Add some documentation

[Mark Hiner] Minor code refactor

[Mark Hiner] DefaultIOService passes context to ImgOpener

[Mark Hiner] Added xyPlane methods to DatasetView

[Mark Hiner] Initial mockup of autoscale service

[Mark Hiner] Javadoc update

[Mark Hiner] AutoscaleService now working

[Mark Hiner] Make Brightness/Contrast use AutoscaleService

[Mark Hiner] Use AutoscaleService

[Mark Hiner] Eliminate warnings

[Mark Hiner] Remove unnecessary @Parameters

[Mark Hiner] Fix code that trips up javac

[Mark Hiner] Make a confidence interval autoscale method

[Mark Hiner] Fix author designation

[Mark Hiner] Improve generic constraints

[Mark Hiner] Remove warning

[Mark Hiner] Remove warnings

[Mark Hiner] Enhance testing

[Mark Hiner] Improve tests and fix pixel assignment bug

[Mark Hiner] Eliminate warnings

[Mark Hiner] Clean up some loose ends

[Mark Hiner] Fix bug in confidence interval calcs

[Mark Hiner] Improve confidence interval test code

[Mark Hiner] Enhance confidence interval autoscale code

[Mark Hiner] Fixup documentation

[Mark Hiner] Enhance confidence interval autoscale method

[Mark Hiner] Use a DataRange helper class

[Mark Hiner] Add a Default button to B&C dialog

[Mark Hiner] Added Plane/Dataset toggle to BrightnessContrast

[Mark Hiner] Fix threshold dialog initialization bug

[Mark Hiner] SaveAsImage passes context to ImgSaver

[Mark Hiner] Removed status listener setting

[Barry DeZonia] Fix exception bug with threshold overlays

[Barry DeZonia] Fix a threshold display bug

[Barry DeZonia] Make castItem() successful with primitive types

[Barry DeZonia] Remove temp workaround

[Barry DeZonia] Support the reading of text table luts

[Barry DeZonia] Cleanup some logic in loadLUT()

[Mark Hiner] Updated dependencies for io.scif conversion

[Curtis Rueden] Update Fiji mailing lists metadata

[Curtis Rueden] Update pom-scijava to 1.44

[Curtis Rueden] StatusDispatcher: fix imports

[Curtis Rueden] Remove obsolete imglib2-io dependency

[Curtis Rueden] Fix whitespace in import sections

[Curtis Rueden] DefaultIOService: better isImageData implementation

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[DEBUG] Using connector WagonRepositoryConnector with priority 0 for http://repo1.maven.org/maven2
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[DEBUG] Created new class realm extension>org.apache.maven.plugins:nar-maven-plugin:3.0.0-scijava-1
[DEBUG] Importing foreign packages into class realm extension>org.apache.maven.plugins:nar-maven-plugin:3.0.0-scijava-1
[DEBUG]   Imported:  < maven.api
[DEBUG] Populating class realm extension>org.apache.maven.plugins:nar-maven-plugin:3.0.0-scijava-1
[DEBUG]   Included: org.apache.maven.plugins:nar-maven-plugin:jar:3.0.0-scijava-1
[DEBUG]   Included: org.apache.maven.surefire:surefire-booter:jar:2.6
[DEBUG]   Included: org.apache.maven.surefire:surefire-api:jar:2.6
[DEBUG]   Included: org.slf4j:slf4j-jdk14:jar:1.5.6
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[DEBUG]   Included: org.slf4j:jcl-over-slf4j:jar:1.5.6
[DEBUG]   Included: org.apache.maven.reporting:maven-reporting-api:jar:2.2.1
[DEBUG]   Included: org.apache.maven.doxia:doxia-sink-api:jar:1.1
[DEBUG]   Included: org.apache.maven.doxia:doxia-logging-api:jar:1.1
[DEBUG]   Included: commons-cli:commons-cli:jar:1.2
[DEBUG]   Included: org.codehaus.plexus:plexus-interactivity-api:jar:1.0-alpha-4
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[DEBUG]   Included: org.sonatype.plexus:plexus-cipher:jar:1.4
[DEBUG]   Included: org.apache.xbean:xbean-reflect:jar:3.4
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[DEBUG]   Included: org.codehaus.plexus:plexus-utils:jar:2.0.5
[DEBUG]   Included: org.codehaus.plexus:plexus-archiver:jar:1.0
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[DEBUG]   Included: org.apache.ant:ant-launcher:jar:1.8.1
[DEBUG]   Included: commons-io:commons-io:jar:2.4
[DEBUG] Extension realms for project net.imagej:ij-launcher:nar:2.0.0-SNAPSHOT: [ClassRealm[extension>org.apache.maven.wagon:wagon-webdav-jackrabbit:1.0, parent: sun.misc.Launcher$AppClassLoader at 1ef6a746], ClassRealm[extension>org.apache.maven.plugins:nar-maven-plugin:3.0.0-scijava-1, parent: sun.misc.Launcher$AppClassLoader at 1ef6a746]]
[DEBUG] Created new class realm project>net.imagej:ij-launcher:2.0.0-SNAPSHOT
[DEBUG] Populating class realm project>net.imagej:ij-launcher:2.0.0-SNAPSHOT
[DEBUG] Looking up lifecyle mappings for packaging nar from ClassRealm[project>net.imagej:ij-launcher:2.0.0-SNAPSHOT, parent: ClassRealm[maven.api, parent: null]]
[WARNING] 
[WARNING] Some problems were encountered while building the effective model for net.imagej:ij-launcher:nar:2.0.0-SNAPSHOT
[WARNING] 'build.plugins.plugin.version' for org.apache.maven.plugins:maven-nar-plugin is missing. @ line 337, column 14
[WARNING] 
[WARNING] It is highly recommended to fix these problems because they threaten the stability of your build.
[WARNING] 
[WARNING] For this reason, future Maven versions might no longer support building such malformed projects.
[WARNING] 
[DEBUG] === REACTOR BUILD PLAN ================================================
[DEBUG] Project: net.imagej:ij-launcher:nar:2.0.0-SNAPSHOT
[DEBUG] Tasks:   [install]
[DEBUG] Style:   Regular
[DEBUG] =======================================================================
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ImageJ Launcher 2.0.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[DEBUG] Resolving plugin version for org.apache.maven.plugins:maven-nar-plugin
[DEBUG] Could not find metadata org.apache.maven.plugins:maven-nar-plugin/maven-metadata.xml in local (/Users/jenkins/.m2/repository)
[DEBUG] Skipped remote update check for org.apache.maven.plugins:maven-nar-plugin/maven-metadata.xml, locally cached metadata up-to-date.
[DEBUG] Using connector WagonRepositoryConnector with priority 0 for http://mvnplugins.fusesource.org/repo/release
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[DEBUG] Using connector WagonRepositoryConnector with priority 0 for http://maven.imagej.net/content/repositories/snapshots
[DEBUG] Using connector WagonRepositoryConnector with priority 0 for http://maven.imagej.net/content/repositories/thirdparty
[DEBUG] Using connector WagonRepositoryConnector with priority 0 for http://maven.imagej.net/content/repositories/releases
Downloading: http://maven.imagej.net/content/repositories/snapshots/org/apache/maven/plugins/maven-nar-plugin/maven-metadata.xml
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[DEBUG] Writing resolution tracking file /Users/jenkins/.m2/repository/org/apache/maven/plugins/maven-nar-plugin/resolver-status.properties
[DEBUG] Could not find metadata org.apache.maven.plugins:maven-nar-plugin/maven-metadata.xml in mvnplugins.fusesource.org (http://mvnplugins.fusesource.org/repo/release)
[DEBUG] Could not find metadata org.apache.maven.plugins:maven-nar-plugin/maven-metadata.xml in imagej.releases (http://maven.imagej.net/content/repositories/releases)
[DEBUG] Resolved plugin version for org.apache.maven.plugins:maven-nar-plugin to 2.1-20120403 from repository imagej.thirdparty (http://maven.imagej.net/content/repositories/thirdparty, releases+snapshots)
[DEBUG] Lifecycle default -> [validate, initialize, generate-sources, process-sources, generate-resources, process-resources, compile, process-classes, generate-test-sources, process-test-sources, generate-test-resources, process-test-resources, test-compile, process-test-classes, test, prepare-package, package, pre-integration-test, integration-test, post-integration-test, verify, install, deploy]
[DEBUG] Lifecycle clean -> [pre-clean, clean, post-clean]
[DEBUG] Lifecycle site -> [pre-site, site, post-site, site-deploy]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 9.285s
[INFO] Finished at: Mon Jun 03 22:06:32 CDT 2013
[INFO] Final Memory: 7M/31M
[INFO] ------------------------------------------------------------------------
[ERROR] Could not find goal 'nar-process-libraries' in plugin org.apache.maven.plugins:maven-nar-plugin:2.1-20120403 among available goals nar-unpack, nar-download, nar-gnu-configure, nar-testDownload, nar-gnu-resources, nar-package, nar-validate, nar-vcproj, nar-system-generate, nar-testUnpack, nar-resources, nar-test, nar-gnu-process, nar-testCompile, nar-gnu-make, nar-compile, nar-javah, nar-integration-test, nar-assembly, help -> [Help 1]
org.apache.maven.plugin.MojoNotFoundException: Could not find goal 'nar-process-libraries' in plugin org.apache.maven.plugins:maven-nar-plugin:2.1-20120403 among available goals nar-unpack, nar-download, nar-gnu-configure, nar-testDownload, nar-gnu-resources, nar-package, nar-validate, nar-vcproj, nar-system-generate, nar-testUnpack, nar-resources, nar-test, nar-gnu-process, nar-testCompile, nar-gnu-make, nar-compile, nar-javah, nar-integration-test, nar-assembly, help
	at org.apache.maven.plugin.internal.DefaultMavenPluginManager.getMojoDescriptor(DefaultMavenPluginManager.java:267)
	at org.apache.maven.plugin.DefaultBuildPluginManager.getMojoDescriptor(DefaultBuildPluginManager.java:185)
	at org.apache.maven.lifecycle.internal.DefaultLifecycleExecutionPlanCalculator.setupMojoExecution(DefaultLifecycleExecutionPlanCalculator.java:152)
	at org.apache.maven.lifecycle.internal.DefaultLifecycleExecutionPlanCalculator.setupMojoExecutions(DefaultLifecycleExecutionPlanCalculator.java:139)
	at org.apache.maven.lifecycle.internal.DefaultLifecycleExecutionPlanCalculator.calculateExecutionPlan(DefaultLifecycleExecutionPlanCalculator.java:116)
	at org.apache.maven.lifecycle.internal.DefaultLifecycleExecutionPlanCalculator.calculateExecutionPlan(DefaultLifecycleExecutionPlanCalculator.java:129)
	at org.apache.maven.lifecycle.internal.BuilderCommon.resolveBuildPlan(BuilderCommon.java:92)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
	at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319)
	at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
	at org.apache.maven.cli.MavenCli.execute(MavenCli.java:537)
	at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:196)
	at org.apache.maven.cli.MavenCli.main(MavenCli.java:141)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:290)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:230)
	at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:409)
	at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:352)
[ERROR] 
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoNotFoundException
Build step 'Execute shell' marked build as failure
Archiving artifacts



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