[ImageJ-builds] Build failed in Jenkins: fiji-windows-core #455

Jenkins Daemon jenkins at qa.nest-initiative.org
Wed Jul 24 18:44:16 CDT 2013 

See <https://qa.nest-initiative.org/job/fiji-windows-core/455/>

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C:\jenkins\workspace\fiji-windows-core\src-plugins\StackReg_\src\main\java\StackReg_.java:1625: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class<?> for a varargs call
cast to java.lang.Class<?>[] for a non-varargs call and to suppress this warning
				method = turboRegB.getClass().getMethod("getTransformedImage", null);
				                                                               ^
C:\jenkins\workspace\fiji-windows-core\src-plugins\StackReg_\src\main\java\StackReg_.java:1626: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
				transformedSourceB = (ImagePlus)method.invoke(turboRegB, null);
				                                                         ^
C:\jenkins\workspace\fiji-windows-core\src-plugins\StackReg_\src\main\java\StackReg_.java:1758: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class<?> for a varargs call
cast to java.lang.Class<?>[] for a non-varargs call and to suppress this warning
				method = turboReg.getClass().getMethod("getTransformedImage", null);
				                                                              ^
C:\jenkins\workspace\fiji-windows-core\src-plugins\StackReg_\src\main\java\StackReg_.java:1759: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
				ImagePlus transformedSource = (ImagePlus)method.invoke(turboReg, null);
				                                                                 ^
18 warnings
Compiling 7 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Stack_Manipulation
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Stack_Manipulation\src\main\java\Kalman_Filter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Statistical_Region_Merging
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\jai_imageio-4.4.8.jar'
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\jai_imageio-1.0.1.jar'
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Warning: could not delete 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Compiling 12 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\Sync_Windows.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Thread_Killer
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Thread_Killer\src\main\java\Thread_Killer.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 3 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Threshold_Colour
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Time_Stamper
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\ToAST_
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\ToAST_\src\main\java\ToAST25_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\ToAST_\src\main\java\ToAST25_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\TopoJ_
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\TopoJ_\src\main\java\Remove_Slope.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 227 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\mpicbg-0.6.0-SNAPSHOT.jar'
Compiling 37 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\jai_imageio-4.4.8.jar'
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\jai_imageio-1.0.1.jar'
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\mpicbg-20111128.jar'
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Warning: could not delete 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Compiling 14 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\TransformJ_
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\TransformJ_\src\main\java\TJ_Matrix.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\TurboReg_
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\TurboReg_\src\main\java\TurboReg_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\UnwarpJ_
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\UnwarpJ_\src\main\java\UnwarpJ_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\UnwarpJ_\src\main\java\UnwarpJ_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Updater_Fix
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Updater_Fix\src\main\java\fiji\updater\BinaryPList.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 6 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Vaa3d_Reader
Compiling 10 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Video_Editing
Compiling 37 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\View5D_
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\View5D_\src\main\java\view5d\ImageCanvas.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 7 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Volume_Calculator
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Volume_Calculator\src\main\java\volumeCalculator\Volume_Calculator.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Volume_Calculator\src\main\java\volumeCalculator\CustomVolumeBehavior2.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 18 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Volume_Viewer
Compiling 3 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\blockmatching_
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\jai_imageio-4.4.8.jar'
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\jai_imageio-1.0.1.jar'
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Warning: could not delete 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Warning: could not delete 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\jai_imageio-4.4.8.jar'
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Warning: could not delete 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Warning: could not delete 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\jai_imageio-1.0.1.jar'
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\mij
Compiling 6 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\panorama_
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\register_virtual_stack_slices
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\register_virtual_stack_slices\src\main\java\register_virtual_stack\Register_Virtual_Stack_MT.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\jai_imageio-4.4.8.jar'
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\jai_imageio-1.0.1.jar'
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Warning: could not delete 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\registration_3d
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\weave_jy2java
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\weave_jy2java\src\main\java\fiji\scripting\Weaver.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\weave_jy2java\src\main\java\fiji\scripting\Weaver.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\jai_imageio-4.4.8.jar'
Warning: deleting 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Warning: could not delete 'C:\jenkins\workspace\fiji-windows-core\jars\scijava-common-1.5.0.jar'
Looking at children of pom-fiji-submodules
+ update_launcher
+ case "$LAUNCHER" in
+ uptodate /c/jenkins/workspace/fiji-windows-core/./Build.sh /c/jenkins/workspace/fiji-windows-core/ImageJ-win64.exe
+ test -f /c/jenkins/workspace/fiji-windows-core/ImageJ-win64.exe
+ cd /c/jenkins/workspace/fiji-windows-core
+ sh -ahxB bin/download-launchers.sh release win64
+ set -e
+ unset CDPATH
++ dirname bin/download-launchers.sh
++ case "$1" in
++ echo bin
+ cd bin/..
+ case "$1" in
+ mode=releases
+ platform=win64
+ case "$platform" in
+ groupId=net/imagej
+ artifactId=ij-launcher
+ baseurl=http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher
++ curl http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/maven-metadata.xml
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   651  100   651    0     0   2604      0 --:--:-- --:--:-- --:--:--  5208
+ metadata='<?xml version="1.0" encoding="UTF-8"?>
<metadata>
  <groupId>net.imagej</groupId>
  <artifactId>ij-launcher</artifactId>
  <versioning>
    <latest>2.0.0</latest>
    <release>2.0.2</release>
    <versions>
      <version>2.0.0-beta1</version>
      <version>2.0.0-beta2</version>
      <version>2.0.0-beta2.1</version>
      <version>2.0.0-beta3</version>
      <version>2.0.0-beta4</version>
      <version>2.0.0-beta5</version>
      <version>2.0.0-beta6</version>
      <version>2.0.0</version>
      <version>2.0.1</version>
      <version>2.0.2</version>
    </versions>
    <lastUpdated>20130722221719</lastUpdated>
  </versioning>
</metadata>'
++ get version
++ echo '<?xml version="1.0" encoding="UTF-8"?>
<metadata>
  <groupId>net.imagej</groupId>
  <artifactId>ij-launcher</artifactId>
  <versioning>
    <latest>2.0.0</latest>
    <release>2.0.2</release>
    <versions>
      <version>2.0.0-beta1</version>
      <version>2.0.0-beta2</version>
      <version>2.0.0-beta2.1</version>
      <version>2.0.0-beta3</version>
      <version>2.0.0-beta4</version>
      <version>2.0.0-beta5</version>
      <version>2.0.0-beta6</version>
      <version>2.0.0</version>
      <version>2.0.1</version>
      <version>2.0.2</version>
    </versions>
    <lastUpdated>20130722221719</lastUpdated>
  </versioning>
</metadata>'
++ sed -n 's/.*<version>\(.*\)<\/version>.*/\1/p'
++ tail -n 1
+ version=2.0.2
+ baseurl=http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/2.0.2
+ case "$version" in
+ basename=ij-launcher-2.0.2
+ tmpdir=.tmp.1996
+ mkdir .tmp.1996
+ curl http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/2.0.2/ij-launcher-2.0.2.nar
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 16900  100 16900    0     0  45066      0 --:--:-- --:--:-- --:--:-- 67600
+ test -z win64
+ download_platform win64
+ case "$1" in
+ download amd64-Windows ImageJ-win64.exe
+ exe=
+ case "$2" in
+ exe=.exe
+ case $2 in
+ curl http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/2.0.2/ij-launcher-2.0.2-amd64-Windows-gcc-executable.nar
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 50  121k   50 62888    0     0    98k      0  0:00:01 --:--:--  0:00:01  122k
100  121k  100  121k    0     0   123k      0 --:--:-- --:--:-- --:--:--  141k
+ unzip -p .tmp.1996/amd64-Windows.zip bin/amd64-Windows-gcc/ij-launcher.exe
+ chmod a+x ImageJ-win64.exe
+ case $2,$mode in
++ echo ImageJ-win64.exe
++ sed s/ImageJ-/fiji-/
+ fiji=fiji-win64.exe
+ case "$fiji" in
+ cp ImageJ-win64.exe fiji-win64.exe
+ test '!' -z win64
+ cp ImageJ-win64.exe ImageJ.exe
+ cp fiji-win64.exe fiji.exe
+ rm -rf .tmp.1996
+ test -z fiji-win64.exe
+ test '!' -f /c/jenkins/workspace/fiji-windows-core/fiji-win64.exe
+ rm /c/jenkins/workspace/fiji-windows-core/fiji-win64.exe
+ for name in fiji ImageJ
+ uptodate ImageJ-win64.exe fiji
+ test -f fiji
+ test fiji -nt ImageJ-win64.exe
+ cp ImageJ-win64.exe fiji
cp: cannot create regular file `fiji': No such file or directory
+ for name in fiji ImageJ
+ uptodate ImageJ-win64.exe ImageJ
+ test -f ImageJ
+ test ImageJ -nt ImageJ-win64.exe
+ cp ImageJ-win64.exe ImageJ
cp: cannot create regular file `ImageJ': No such file or directory
Build step 'Execute shell' marked build as failure
Build step 'Groovy Postbuild' marked build as failure

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