[ImageJ-builds] Build failed in Jenkins: fiji-core #787
Jenkins Daemon
jenkins at qa.nest-initiative.org
Wed Jul 24 18:24:30 CDT 2013
See <https://qa.nest-initiative.org/job/fiji-core/787/changes>
Changes:
[Johannes Schindelin] Expose the 'Slide Show' plugin from the Macro Interpreter
[stephan.preibisch] Fixed bug in multi-channel bead registration
[stephan.preibisch] fixed another bug in setting up multiple tracks
[jean-yves.tinevez] TrackMate_: v2.0.4: fix a GUI bug noticed by T. Pietzsch
[Curtis Rueden] Image_Expression_Parser: fix dependency version
[stephan.preibisch] fixed threshold for integral image bead based registration
[stephan.preibisch] can provide a current guess of the deconvolved image,
[stephan.preibisch] formalized loading of previous image including range check
[Curtis Rueden] fiji-lib: add NumberParser class
[Curtis Rueden] TrackMate_: fix some dependency versions
[Curtis Rueden] TrackMate_: use fiji-lib's NumberParser
[Curtis Rueden] .gitignore: Add more jar files
[Curtis Rueden] Update imglib submodule pointer
[ignacio.arganda] Trainable Weka Segmentation: fix rank of threshold application.
[Curtis Rueden] Use imglib2.version property for imglib2 deps
[Curtis Rueden] Fix whitespace
[Curtis Rueden] Update Bio-Formats dependencies to 4.4.8
[Curtis Rueden] Use fiji.version property for inter-plugin deps
[ignacio.arganda] Trainable Weka Segmentation: added method to compute the precision and recall based on the pixel classification after warping (only for splits and mergers).
[Curtis Rueden] Tell Maven that pom-scijava is outside the reactor
[Johannes Schindelin] Upgrade TrakEM2 to the newest pom-scijava version
[stephan.preibisch] updated deconvolution to the "final" state
[Johannes Schindelin] Use shorter URL in download-launchers
[Johannes Schindelin] Follow ImageJ2's SNAPSHOT versions for now
[Johannes Schindelin] Remove the TrakEM2 module for now
[Johannes Schindelin] Update the ImageJ2 submodule
[Johannes Schindelin] Aaargh... update TrakEM2 to a temporary fork
[stephan.preibisch] fixed a bug in the weighting scheme, normalizing only if sumweights > 1,
[mail] 3D Objects Counter: be less impolite
[Johannes Schindelin] Move resource back where it belongs
[stephan.preibisch] it is now possible to load and store PSFs, makes it much more useful
[ignacio.arganda] Trainable Weka Segmentation: corrected method to calculate precision recall.
[Curtis Rueden] Fix up the README a bit
[Curtis Rueden] README.md: also add Kota
[steinbac] Multi_View_Deconvolution: added new logic to select the standard GPU on multi-GPU hosts
[steinbac] LRFFTThreads: changed println labels for timings per iteration to state which steps are conducted on the CPU and which are done on the GPU
[jenkins] Bump to pom-scijava 1.49
[jenkins] Bump to pom-scijava 1.50
[jenkins] Bump to pom-scijava 1.51
[Curtis Rueden] Update ImageJ2 submodule for pom-scijava 1.51
[Johannes Schindelin] Move to release-coupling with ImageJ2, ImgLib2
[Johannes Schindelin] Stop handling uncoupled submodules
[Johannes Schindelin] Build.sh: refactor the use of maven-helper.sh
[Johannes Schindelin] Build.sh: no need to force-install the SSH uploader
[Johannes Schindelin] Build.sh: use the correct MiniMaven version
[Johannes Schindelin] Ignacio wins the prize
[Johannes Schindelin] Add a few more authors to the README
[jean-yves.tinevez] Descriptor-based registration: propagate single model to multiple time-points
[Johannes Schindelin] Build.sh: clarify the parameter order of uptodate()
[Johannes Schindelin] Build.sh: Make sure that maven-helper.sh is updated properly
[Johannes Schindelin] Build.sh: avoid Git's 'Already up-to-date' cluttering version numbers
[Johannes Schindelin] Build.sh: if scijava-common could not be updated, fail
[Johannes Schindelin] Build.sh: really redirect 'Already up-to-date' message
[Johannes Schindelin] Build.sh: avoid unnecessary call to maven_helper
[Johannes Schindelin] Build.sh: make sure that just-downloaded files are considered up-to-date
[Johannes Schindelin] download-launchers: fix the version of the ij-launcher.jar
[Johannes Schindelin] Build.sh: download launcher releases instead of snapshots
[stephan.preibisch] allow the fusion using the first image as bounding box
[stephan.preibisch] fixed bugs int selecting the standard CUDA device
[stephan.preibisch] allow nearestneighborinterpolation for fusion of datasets
[stephan.preibisch] added the option also for time series
[Johannes Schindelin] Make Make_Screencast.bsh truly executable
[Johannes Schindelin] Refactor Make_Screencast.bsh
[Johannes Schindelin] Make_Screencast (cmd-line): allow specifying a region
[Johannes Schindelin] Make_Screencast (cmd-line): allow specifying the frames per second
[Johannes Schindelin] Make_Screencast (cmd-line): allow overwriting existing files
[Johannes Schindelin] Fix install-java3d
[Johannes Schindelin] Special-case MacOSX in Edit>Memory & Threads... again
[ignacio.arganda] Analyze Skeleton: fixed bug when pruning end-point branches on an image without end points reported by Jan Eglinger.
[Johannes Schindelin] Fix second (and later) runs of Temporal-Color Code
[Johannes Schindelin] Build.sh: work around Git for Windows' lack of stat(1)
[Johannes Schindelin] Build.sh: respect the -- option separator
[Johannes Schindelin] Build.sh: propagate the '-x' to other shell scripts
[stephan.preibisch] fixed two bugs in the overlay fusion for the descriptor based registration
[Johannes Schindelin] Updater_Fix.js: Make sure that ij.IJ is found
[Johannes Schindelin] Add a little utility to update the URLs in Updater_Fix.js
[Johannes Schindelin] Update the URLs in Updater_Fix.js to the newest, latest & greatest
[ignacio.arganda] Trainable Weka Segmentation: added method to create instances in place.
[ignacio.arganda] Trainable Weka Segmentation: create instances in place to improve speed.
[stephan.preibisch] difference-of-mean does not ignore minmaxset anymore
[Johannes Schindelin] QuickPALM: fix NullPointerException
[Johannes Schindelin] Build.sh: handle 'fiji' and 'ImageJ' target again
[Johannes Schindelin] Update .gitignore for current ImageJ2
[Johannes Schindelin] Weed out .gitignore some
[Johannes Schindelin] fiji.Main: Make sure that the IJ1Patcher has run
[ignacio.arganda] Trainable Weka Segmentation: beautify code.
[ignacio.arganda] Trainable Weka Segmentation: clean code.
[ignacio.arganda] Trainable Weka Segmentation: speed classification.
[ignacio.arganda] Trainable Weka Segmentation: fix bug to prevent getting probabilities after changing classifier in the settings dialog.
[ignacio.arganda] Trainable Weka Segmentation: disable unusable buttons after changing classifier in the settings dialog.
[jenkins] Bump to pom-scijava 1.53
[Johannes Schindelin] Fix a couple of compiler warnings in fiji-compat's IJ1 hacking code
[Johannes Schindelin] Make sure that ImageJ2's legacy layer gets initialized
[Johannes Schindelin] IJHacker: be nice if ij-legacy already defined some classes
[Johannes Schindelin] Add ij-app as a dependency of fiji-compat
[Johannes Schindelin] Add Help>Switch To Modern Mode
[Johannes Schindelin] Remove some unused imports
[Johannes Schindelin] JavassistHelper: do not rely on isFrozen
[Johannes Schindelin] fiji-compat's Mighty Mouse handling moved to ij-legacy
[Johannes Schindelin] fiji-compat's CompositeImage handling moved to ij-legacy
[Johannes Schindelin] fiji-compat's ImagePlus handling moved to ij-legacy
[Johannes Schindelin] Some of fiji-compat's ij.IJ handling moved to ij-legacy
[Johannes Schindelin] fiji-compat: setting the context class loader moved to ij-legacy
[Johannes Schindelin] IJ1Patcher: legacy headless support moved to ImageJ2
[Johannes Schindelin] IJHacker: code to set the application name moved to ImageJ2
[Johannes Schindelin] Organize imports in FijiClassLoader
[Johannes Schindelin] fiji-compat: move NoSuchMethodError handling to ij-legacy
[Johannes Schindelin] Fix compiler warnings in CheckClassVersions
[Johannes Schindelin] Fix compiler warnings in User_Plugins
[Johannes Schindelin] Fix compiler warnings in FijiClassLoader
[Johannes Schindelin] Fix compiler warnings in fiji.Main
[Johannes Schindelin] Fix compiler warnings in OtherInstance
[Johannes Schindelin] Fix compiler warnings in SetIcon
[Johannes Schindelin] Fix compiler warnings in fiji.command.Command
[Johannes Schindelin] Fix compiler warnings in IJ_Alt_Key_Listener
[Johannes Schindelin] Fix compiler warnings in SimpleExecuter
[Johannes Schindelin] Fix compiler warnings in FileDialogDecorator
[Johannes Schindelin] Deprecate SimpleExecuter
[Johannes Schindelin] Avoid using the SimpleExecuter
[Johannes Schindelin] Stop forcing IJ.getClassLoader() to return a FijiClassLoader
[Johannes Schindelin] Deprecate the FijiClassLoader
[Johannes Schindelin] Retire fiji.command.Command
[Johannes Schindelin] Bu-bye, ImageJA
[Johannes Schindelin] fiji-compat: move GenericDialog patches to ij-legacy
[Johannes Schindelin] fiji-compat: move NonModalGenericDialog patches to ij-legacy
[Johannes Schindelin] JavassistHelper#verify: avoid using the deprecated FijiClassLoader
[Johannes Schindelin] Add the getMenuItem() function family to FijiTools
[Johannes Schindelin] Also move User_Plugins#installPlugin() to FijiTools
[Johannes Schindelin] Moved another ImageJ 1.x patch to ij-legacy
[Johannes Schindelin] Move the ImageJ 1.x windows' icon logic to ij-legacy
[Johannes Schindelin] Remove the OtherInstance logic from fiji-compat
[Johannes Schindelin] fiji-compat: -batch-no-exit handling moved to ij-legacy
[Johannes Schindelin] Move the prefsDir handling to ij-legacy
[Johannes Schindelin] Move Toolbar handling from fiji-compat to ij-legacy
[Johannes Schindelin] fiji-compat: move the JavaScriptEvaluator patching to ij-legacy
[Johannes Schindelin] fiji-compat: move the Bio-Formats detection patch to ij-legacy
[Johannes Schindelin] fiji-compat: move the symlink fix for DragAndDrop to ij-legacy
[Johannes Schindelin] fiji-compat: remove WindowManager#setCurrentWindow(ImageWindow, boolean)
[Johannes Schindelin] Move fiji-compat's ij.macro.Function#call() patch to ij-legacy
[Johannes Schindelin] Move File>Import>Image Sequence patching to ij-legacy
[Johannes Schindelin] Port fiji-compat's ij.macro.Interpreter patch to ij-legacy
[Johannes Schindelin] Stop special-casing Fiji for Open StartupMacros
[Johannes Schindelin] No longer patch ImageJ 1.x to know about StartupMacros.fiji.ijm
[Johannes Schindelin] fiji-compat: move all HTTPS handling to ij-legacy
[Johannes Schindelin] fiji-compat: move Script Editor hooks to ij-legacy
[Johannes Schindelin] Rename gentlyRunPlugIn() into a less German name
[Johannes Schindelin] Move User_Plugins#runPlugIn() to Main
[Johannes Schindelin] fiji.Main: document runPlugInGently()
[Johannes Schindelin] Move the Fiji-specific Refresh Menus handling into its own plugin
[Johannes Schindelin] Make MenuRefresher a Runnable
[Johannes Schindelin] Use the new LegacyExtensions#runAfterRefreshMenus()
[Johannes Schindelin] Retire the IJHacker
[Johannes Schindelin] Fix a comment
[Johannes Schindelin] Automatically create a modern ImageJ context upon startup
[Johannes Schindelin] Fix ./fiji --run 'Switch to Modern Mode'
[Johannes Schindelin] Fix-Updater: Bump the versions to the current ones
[Johannes Schindelin] Fiji Updater: use the remote bootstrap.js
[Johannes Schindelin] Fiji_Updater: deprecate unused classes
[Johannes Schindelin] Fix 'Align by line ROI' without scaling but with rotation
[Johannes Schindelin] Deprecate the JavassistHelper
[clackn] allow to save matched points and models into the descriptor parameters
[jenkins] Bump to pom-scijava 1.54
[jenkins] Bump to pom-scijava 1.55
[stephan.preibisch] fixed a bug in the fusion that creates different output images
[stephan.preibisch] removed unnecessary debug messages and comment
[jenkins] Bump to pom-scijava 1.56
[Johannes Schindelin] .mailmap: attribute two more email addresses properly
[Johannes Schindelin] Fix scope of all those JUnit dependencies
[stephan.preibisch] fixed a bug in the FIBSEM reader, there was a wrong offset
[jenkins] Bump to pom-scijava 1.57
[Johannes Schindelin] Move all unit tests into the appropriate src/test/java/
[Johannes Schindelin] Touch up the first section of the README
[Johannes Schindelin] README: Mention ImageJ.sh
[Johannes Schindelin] VIB-lib (unit tests): do not expect the test data to be there
[Johannes Schindelin] fiji-compat: temporarily fix integration test
[jenkins] Bump to pom-scijava 1.58
[Johannes Schindelin] Colocalization Analysis (unit tests): move two forgotten classes
[Johannes Schindelin] Colocalization Analysis (unit tests): do not expect test data to be present
[Johannes Schindelin] Add missing file for JEP tests
[Johannes Schindelin] Increase tolerance to let IEP test pass
[Johannes Schindelin] Fix unit test errors in Simple Neurite Trace due to missing test data
[Johannes Schindelin] Turn integration test into a maven-failsafe-plugin based one
[Johannes Schindelin] README: fix mark-down mark-up
[Johannes Schindelin] README: replace double-space after full stop with a single one
------------------------------------------
Started by remote host 144.92.48.145
Building remotely on fc-18-i386-7 in workspace <https://qa.nest-initiative.org/job/fiji-core/ws/>
Checkout:fiji-core / <https://qa.nest-initiative.org/job/fiji-core/ws/> - hudson.remoting.Channel at 72810768:fc-18-i386-7
Using strategy: Default
Last Built Revision: Revision 9f52f604628eb6238fba51f024e7fed47fb6c1a8 (origin/master)
Fetching changes from 1 remote Git repository
Fetching upstream changes from origin
Commencing build of Revision 0dee1b091466bcb01d497ce237b3921fd4e28782 (origin/master)
Checking out Revision 0dee1b091466bcb01d497ce237b3921fd4e28782 (origin/master)
Cleaning workspace
Resetting working tree
[fiji-core] $ /bin/bash /tmp/hudson9205260336906195150.sh
+ ./Build.sh -Dminimaven.updateinterval=1 -- verbose=true
>From git://github.com/scijava/scijava-common
4c6e102..4dd8a80 master -> origin/master
Updating 4c6e102..4dd8a80
Fast-forward
.factorypath | 2 +-
bin/bump-pom-scijava.sh | 17 ++-
bin/duplicate-class-names.sh | 21 ++++
bin/hooks/README.txt | 1 +
bin/hooks/pre-commit-no-snapshots.sh | 9 ++
bin/incremental-deploy.sh | 4 +-
bin/install-git-hooks.sh | 38 +++++++
bin/maven-helper.sh | 54 ++++++++--
bin/release-version.sh | 76 +++++++++++---
log-slf4j/.factorypath | 2 +-
pom-scijava/pom.xml | 96 ++++++++++-------
pom.xml | 24 ++++-
src/main/java/org/scijava/AbstractGateway.java | 87 ++++++++++++++++
src/main/java/org/scijava/Gateway.java | 41 ++++++++
.../java/org/scijava/InstantiableException.java | 2 +
src/main/java/org/scijava/MenuPath.java | 2 +
.../java/org/scijava/NoSuchServiceException.java | 2 +
src/main/java/org/scijava/Optional.java | 53 ++++++++++
src/main/java/org/scijava/Typed.java | 60 +++++++++++
.../java/org/scijava/app/DefaultAppService.java | 1 +
.../org/scijava/event/DefaultEventHistory.java | 13 +--
.../org/scijava/event/DefaultEventService.java | 1 +
.../java/org/scijava/log/AbstractLogService.java | 116 ++++++++++++++++-----
.../org/scijava/plugin/AbstractHandlerService.java | 66 ++++++++++++
.../java/org/scijava/plugin/AbstractPTService.java | 67 ++++++++++++
.../scijava/plugin/AbstractSingletonService.java | 92 ++++++++++++++++
.../org/scijava/plugin/AbstractTypedPlugin.java | 58 +++++++++++
.../org/scijava/plugin/AbstractTypedService.java | 49 +++++++++
.../org/scijava/plugin/AbstractWrapperPlugin.java | 66 ++++++++++++
.../org/scijava/plugin/AbstractWrapperService.java | 94 +++++++++++++++++
.../org/scijava/plugin/DefaultPluginService.java | 2 +
.../java/org/scijava/plugin/HandlerPlugin.java | 62 +++++++++++
.../java/org/scijava/plugin/HandlerService.java | 80 ++++++++++++++
src/main/java/org/scijava/plugin/PTService.java | 95 +++++++++++++++++
.../java/org/scijava/plugin/SingletonPlugin.java | 54 ++++++++++
.../java/org/scijava/plugin/SingletonService.java | 65 ++++++++++++
.../java/org/scijava/plugin/SortablePlugin.java | 8 ++
src/main/java/org/scijava/plugin/TypedPlugin.java | 53 ++++++++++
src/main/java/org/scijava/plugin/TypedService.java | 60 +++++++++++
.../java/org/scijava/plugin/WrapperPlugin.java | 62 +++++++++++
.../java/org/scijava/plugin/WrapperService.java | 71 +++++++++++++
.../java/org/scijava/service/AbstractService.java | 30 ++++++
src/main/java/org/scijava/service/Service.java | 19 +++-
.../java/org/scijava/service/ServiceHelper.java | 27 ++++-
.../org/scijava/thread/DefaultThreadService.java | 22 ++--
.../java/org/scijava/thread/ThreadService.java | 6 +-
src/main/java/org/scijava/util/AppUtils.java | 3 +-
src/main/java/org/scijava/util/CheckSezpoz.java | 57 ++++++----
src/main/java/org/scijava/util/FileUtils.java | 2 +-
.../java/org/scijava/util/SizableArrayList.java | 2 +
.../java/org/scijava/util/CheckSezpozTest.java | 14 ++-
51 files changed, 1860 insertions(+), 148 deletions(-)
create mode 100755 bin/duplicate-class-names.sh
create mode 100644 bin/hooks/README.txt
create mode 100755 bin/hooks/pre-commit-no-snapshots.sh
create mode 100755 bin/install-git-hooks.sh
create mode 100644 src/main/java/org/scijava/Optional.java
create mode 100644 src/main/java/org/scijava/Typed.java
create mode 100644 src/main/java/org/scijava/plugin/AbstractHandlerService.java
create mode 100644 src/main/java/org/scijava/plugin/AbstractPTService.java
create mode 100644 src/main/java/org/scijava/plugin/AbstractSingletonService.java
create mode 100644 src/main/java/org/scijava/plugin/AbstractTypedPlugin.java
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create mode 100644 src/main/java/org/scijava/plugin/AbstractWrapperPlugin.java
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create mode 100644 src/main/java/org/scijava/plugin/HandlerPlugin.java
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create mode 100644 src/main/java/org/scijava/plugin/PTService.java
create mode 100644 src/main/java/org/scijava/plugin/SingletonPlugin.java
create mode 100644 src/main/java/org/scijava/plugin/SingletonService.java
create mode 100644 src/main/java/org/scijava/plugin/TypedPlugin.java
create mode 100644 src/main/java/org/scijava/plugin/TypedService.java
create mode 100644 src/main/java/org/scijava/plugin/WrapperPlugin.java
create mode 100644 src/main/java/org/scijava/plugin/WrapperService.java
Downloading sc.fiji:javac:2.0.0-SNAPSHOT
Downloading net.imagej:ij-minimaven:2.0.0-beta-7.1
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Compiling 27 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-lib>
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Compiling 3 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Algorithm_Launcher>
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Compiling 26 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/fiji-compat>
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Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Calculator_Plus>
Compiling 2 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Clojure_Interpreter>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Clojure_Interpreter/src/main/java/Clojure/Clojure_Interpreter.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 32 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colocalisation_Analysis/src/main/java/results/SingleWindowDisplay.java> uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Histogram>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 4 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Colour_Deconvolution>
Compiling 8 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/CorrectBleach_>
Compiling 33 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 155 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/SPIM_Registration>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 59 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Stitching_>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Descriptor_based_registration>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: deleting '<https://qa.nest-initiative.org/job/fiji-core/ws/jars/jai_imageio-1.0.1.jar'>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Dichromacy_>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Differentials_>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Directionality_>
Compiling 30 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/imageware>
Compiling 5 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/wavelets>
Compiling 31 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Extended_Depth_Field>
Note: <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Extended_Depth_Field/src/main/java/surfacemap/SurfaceMap3D.java> uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 5 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Lasso_and_Blow_Tool>
Compiling 1 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/Skeletonize3D_>
Compiling 117 files in <https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_>
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/VIB_/src/main/java/marchingcubes/ExportMesh_.java>:35: cannot access mpicbg.imglib.type.numeric.RealType
class file for mpicbg.imglib.type.numeric.RealType not found
List mesh = triangulator.getTriangles(
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
1 error
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:446)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:377)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:400)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:377)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:400)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:334)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:290)
at imagej.build.MiniMaven.main(MiniMaven.java:144)
Build step 'Execute shell' marked build as failure
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