[ImageJ-builds] Build failed in Jenkins: Fiji-Maven #523

jenkins at imagej.net jenkins at imagej.net
Wed Jul 24 17:43:29 CDT 2013 

See <http://jenkins.imagej.net/job/Fiji-Maven/523/changes>

Changes:

[Johannes Schindelin] Turn integration test into a maven-failsafe-plugin based one

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[...truncated 10957 lines...]
[INFO] Dependency imglib2-2.0.0-beta-9.jar is already there; skipping
[INFO] Dependency imglib2-algorithms-2.0.0-beta-9.jar is already there; skipping
[INFO] Copying imglib2-algorithms-gpl-2.0.0-beta-9.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Copying mpicbg-20111128.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Dependency mines-jtk-20100113.jar is already there; skipping
[INFO] Dependency imglib2-ij-2.0.0-beta-9.jar is already there; skipping
[INFO] Copying imglib2-algorithms-legacy-2.0.0-beta-9.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] ------------------------------------------------------------------------
[INFO] Building plugins/Trainable_Segmentation.jar
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 4 resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 37 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Trainable_Segmentation/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Trainable_Segmentation/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Trainable_Segmentation/target/surefire-reports

-------------------------------------------------------
 T E S T S
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Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Trainable_Segmentation/target/Trainable_Segmentation-2.0.0-SNAPSHOT.jar
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] trainableSegmentation already added, skipping
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Trainable_Segmentation/target/Trainable_Segmentation-2.0.0-SNAPSHOT-sources.jar
[INFO] trainableSegmentation already added, skipping
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Trainable_Segmentation/target/Trainable_Segmentation-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/Trainable_Segmentation/2.0.0-SNAPSHOT/Trainable_Segmentation-2.0.0-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Trainable_Segmentation/target/Trainable_Segmentation-2.0.0-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/Trainable_Segmentation/2.0.0-SNAPSHOT/Trainable_Segmentation-2.0.0-SNAPSHOT-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:Trainable_Segmentation:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:Trainable_Segmentation:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:Trainable_Segmentation:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] Copying Trainable_Segmentation-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/plugins
[INFO] Dependency jama-1.0.2.jar is already there; skipping
[INFO] Dependency VIB-lib-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency jzlib-1.0.7.jar is already there; skipping
[INFO] Dependency pal-optimization-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency commons-math-3.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency fiji-lib-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency ij-1.48a.jar is already there; skipping
[INFO] Dependency imagescience-2.4.1.jar is already there; skipping
[INFO] Dependency Image_5D-1.2.5.jar is already there; skipping
[INFO] Dependency legacy-imglib1-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency mpicbg-0.6.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency scifio-4.4.8.jar is already there; skipping
[INFO] Dependency jai_imageio-4.4.8.jar is already there; skipping
[INFO] Dependency lwf-stubs-4.4.8.jar is already there; skipping
[INFO] Dependency forms-1.2.1.jar is already there; skipping
[INFO] Dependency slf4j-api-1.5.10.jar is already there; skipping
[INFO] Dependency serializer-2.7.1.jar is already there; skipping
[INFO] Dependency xalan-2.7.1.jar is already there; skipping
[INFO] Dependency mines-jtk-20100113.jar is already there; skipping
[INFO] Dependency jcommon-1.0.17.jar is already there; skipping
[INFO] Dependency jfreechart-1.0.14.jar is already there; skipping
[INFO] Dependency xml-apis-1.3.04.jar is already there; skipping
[INFO] Dependency itext-2.1.5.jar is already there; skipping
[INFO] Dependency bcmail-jdk14-138.jar is already there; skipping
[INFO] Dependency bcprov-jdk14-138.jar is already there; skipping
[INFO] Dependency imglib2-algorithms-2.0.0-beta-9.jar is already there; skipping
[INFO] Dependency imglib2-ij-2.0.0-beta-9.jar is already there; skipping
[INFO] Dependency imglib2-2.0.0-beta-9.jar is already there; skipping
[INFO] Dependency weka-dev-3.7.6.jar is already there; skipping
[INFO] Dependency java-cup-0.11a.jar is already there; skipping
[INFO] Dependency pentaho-package-manager-1.0.0.jar is already there; skipping
[INFO] Copying Anisotropic_Diffusion_2D-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/plugins
[INFO] Dependency Stitching_-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency Fiji_Plugins-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency ij-core-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency scijava-common-1.5.0.jar is already there; skipping
[INFO] Dependency sezpoz-1.9-imagej.jar is already there; skipping
[INFO] Dependency eventbus-1.4.jar is already there; skipping
[INFO] Dependency ij-commands-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency ij-data-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency scifio-0.3.0.jar is already there; skipping
[INFO] Dependency jai_imageio-1.0.1.jar is already there; skipping
[INFO] Dependency slf4j-log4j12-1.5.10.jar is already there; skipping
[INFO] Dependency ij-options-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency ij-tools-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency ij-ui-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency ij-updater-core-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency imglib2-ops-2.0.0-beta-9.jar is already there; skipping
[INFO] Dependency object-inspector-0.1.jar is already there; skipping
[INFO] Dependency base64-2.3.8.jar is already there; skipping
[INFO] Dependency fiji-compat-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency javassist-3.16.1-GA.jar is already there; skipping
[INFO] Dependency ij-app-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency ij-scripting-beanshell-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency bsh-2.0b4.jar is already there; skipping
[INFO] Dependency ij-scripting-java-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency ij-minimaven-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency ij-platforms-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency ij-text-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency commons-lang3-3.1.jar is already there; skipping
[INFO] Dependency markdownj-0.3.0-1.0.2b4.jar is already there; skipping
[INFO] Dependency ij-updater-ssh-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency jsch-0.1.49.jar is already there; skipping
[INFO] Dependency ij-updater-webdav-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency ij-ui-swing-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency ij-ui-common-awt-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency ij-util-swing-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency miglayout-3.7.3.1-swing.jar is already there; skipping
[INFO] Dependency jhotdraw-7.6.0.jar is already there; skipping
[INFO] Dependency ij-ui-swing-commands-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency ij-ui-swing-script-editor-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency rsyntaxtextarea-2.0.4.1.jar is already there; skipping
[INFO] Dependency ij-ui-swing-tools-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency ij-ui-swing-updater-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency ij-legacy-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency ij-util-awt-2.0.0-beta-7.1.jar is already there; skipping
[INFO] Dependency loci-common-4.4.8.jar is already there; skipping
[INFO] Dependency loci_plugins-4.4.8.jar is already there; skipping
[INFO] Dependency bio-formats-4.4.8.jar is already there; skipping
[INFO] Dependency mdbtools-java-4.4.8.jar is already there; skipping
[INFO] Dependency metakit-4.4.8.jar is already there; skipping
[INFO] Dependency poi-loci-4.4.8.jar is already there; skipping
[INFO] Dependency commons-logging-1.1.1.jar is already there; skipping
[INFO] Dependency netcdf-4.0.03.jar is already there; skipping
[INFO] Dependency log4j-1.2.14.jar is already there; skipping
[INFO] Dependency ome-xml-4.4.8.jar is already there; skipping
[INFO] ------------------------------------------------------------------------
[INFO] Building plugins/TransformJ_.jar
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 14 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/TransformJ_/target/classes
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] Failure executing javac, but could not parse the error:


The system is out of resources.
Consult the following stack trace for details.
java.lang.OutOfMemoryError: PermGen space
	at com.sun.tools.javac.main.JavaCompiler.<init>(JavaCompiler.java:315)
	at com.sun.tools.javac.main.JavaCompiler.instance(JavaCompiler.java:72)
	at com.sun.tools.javac.main.Main.compile(Main.java:340)
	at com.sun.tools.javac.main.Main.compile(Main.java:279)
	at com.sun.tools.javac.main.Main.compile(Main.java:270)
	at com.sun.tools.javac.Main.compile(Main.java:87)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.codehaus.plexus.compiler.javac.JavacCompiler.compileInProcess(JavacCompiler.java:554)
	at org.codehaus.plexus.compiler.javac.JavacCompiler.compile(JavacCompiler.java:161)
	at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:605)
	at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:128)
	at org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:490)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:694)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalWithLifecycle(DefaultLifecycleExecutor.java:556)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:535)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:387)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:348)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:180)
	at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:328)
	at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:138)
	at org.apache.maven.cli.MavenCli.main(MavenCli.java:362)
	at org.apache.maven.cli.compat.CompatibleMain.main(CompatibleMain.java:60)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
	at org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
	at org.codehaus.classworlds.Launcher.mainWithExitCode(Launcher.java:430)

[INFO] 1 error
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Compilation failure
Failure executing javac, but could not parse the error:


The system is out of resources.
Consult the following stack trace for details.
java.lang.OutOfMemoryError: PermGen space
	at com.sun.tools.javac.main.JavaCompiler.<init>(JavaCompiler.java:315)
	at com.sun.tools.javac.main.JavaCompiler.instance(JavaCompiler.java:72)
	at com.sun.tools.javac.main.Main.compile(Main.java:340)
	at com.sun.tools.javac.main.Main.compile(Main.java:279)
	at com.sun.tools.javac.main.Main.compile(Main.java:270)
	at com.sun.tools.javac.Main.compile(Main.java:87)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.codehaus.plexus.compiler.javac.JavacCompiler.compileInProcess(JavacCompiler.java:554)
	at org.codehaus.plexus.compiler.javac.JavacCompiler.compile(JavacCompiler.java:161)
	at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:605)
	at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:128)
	at org.apache.maven.plugin.DefaultPluginManager.executeMojo(DefaultPluginManager.java:490)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoals(DefaultLifecycleExecutor.java:694)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalWithLifecycle(DefaultLifecycleExecutor.java:556)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoal(DefaultLifecycleExecutor.java:535)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeGoalAndHandleFailures(DefaultLifecycleExecutor.java:387)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.executeTaskSegments(DefaultLifecycleExecutor.java:348)
	at org.apache.maven.lifecycle.DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:180)
	at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:328)
	at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:138)
	at org.apache.maven.cli.MavenCli.main(MavenCli.java:362)
	at org.apache.maven.cli.compat.CompatibleMain.main(CompatibleMain.java:60)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315)
	at org.codehaus.classworlds.Launcher.launch(Launcher.java:255)
	at org.codehaus.classworlds.Launcher.mainWithExitCode(Launcher.java:430)


[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 3 minutes 1 second
[INFO] Finished at: Wed Jul 24 17:43:26 CDT 2013
[INFO] Final Memory: 153M/5258M
[INFO] ------------------------------------------------------------------------
Build step 'Invoke top-level Maven targets' marked build as failure

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