[ImageJ-builds] Build failed in Jenkins: Fiji-minimal #1628
jenkins at imagej.net
jenkins at imagej.net
Wed Jul 24 15:18:30 CDT 2013
See <http://jenkins.imagej.net/job/Fiji-minimal/1628/>
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[...truncated 26533 lines...]
+ eval java -Dpython.cachedir.skip=true -Xincgc -XX:PermSize=128m -Dplugins.dir=/data/devel/jenkins/jobs/Fiji-minimal/workspace -Djava.class.path=/data/devel/jenkins/jobs/Fiji-minimal/workspace/jars/ij-core-2.0.0-beta-7.1.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/jars/ij-minimaven-2.0.0-beta-7.1.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/jars/javac-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/jars/scijava-common-1.5.0.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/jars/sezpoz-1.9-imagej.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/plugins/*.jar -Dsun.java.command=Fiji -Dij.dir=/data/devel/jenkins/jobs/Fiji-minimal/workspace -Dfiji.dir=/data/devel/jenkins/jobs/Fiji-minimal/workspace -Dfiji.executable=ImageJ.sh -Dij.executable=ImageJ.sh imagej.build.MiniMaven -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-minimal/workspace -Dminimaven.updateinterval=1 -Dminimaven.verbose=true install
+ java -Dpython.cachedir.skip=true -Xincgc -XX:PermSize=128m -Dplugins.dir=/data/devel/jenkins/jobs/Fiji-minimal/workspace -Djava.class.path=/data/devel/jenkins/jobs/Fiji-minimal/workspace/jars/ij-core-2.0.0-beta-7.1.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/jars/ij-minimaven-2.0.0-beta-7.1.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/jars/javac-2.0.0-SNAPSHOT.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/jars/scijava-common-1.5.0.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/jars/sezpoz-1.9-imagej.jar:/data/devel/jenkins/jobs/Fiji-minimal/workspace/plugins/*.jar -Dsun.java.command=Fiji -Dij.dir=/data/devel/jenkins/jobs/Fiji-minimal/workspace -Dfiji.dir=/data/devel/jenkins/jobs/Fiji-minimal/workspace -Dfiji.executable=ImageJ.sh -Dij.executable=ImageJ.sh imagej.build.MiniMaven -Dimagej.app.directory=/data/devel/jenkins/jobs/Fiji-minimal/workspace -Dminimaven.updateinterval=1 -Dminimaven.verbose=true install
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Compiling 27 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/fiji-lib
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 22 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/pal-optimization
Compiling 180 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/VIB-lib
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 520 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/legacy-imglib1
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 121 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/3D_Viewer
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 35 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/level_sets
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/3D_Blob_Segmentation
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/3D_Blob_Segmentation/src/main/java/ij3d/segmentation/Blob_Segmentation_in_3D.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 4 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/3D_Objects_Counter
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/3D_Objects_Counter/src/main/java/Utilities/Counter3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 3 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Algorithm_Launcher
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Algorithm_Launcher/src/main/java/AlgorithmInfo.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 6 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/AnalyzeSkeleton_
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/AnalyzeSkeleton_/src/main/java/skeleton_analysis/AnalyzeSkeleton_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Analyze_Reader_Writer
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Anisotropic_Diffusion_2D
Compiling 3 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Arrow_
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Auto_Threshold
Compiling 8 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/BalloonSegmentation_
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/BalloonSegmentation_/src/main/java/BalloonSegmentation_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 26 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/fiji-compat
Compiling 3 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/fiji-scripting
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/BeanShell_Interpreter
Warning: deleting '/data/devel/jenkins/jobs/Fiji-minimal/workspace/jars/jai_imageio-4.4.8.jar'
Warning: deleting '/data/devel/jenkins/jobs/Fiji-minimal/workspace/jars/scijava-common-1.5.0.jar'
Compiling 3 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Bug_Submitter
Compiling 9 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/CLI_
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/CPU_Meter
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Calculator_Plus
Compiling 2 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Clojure_Interpreter
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Clojure_Interpreter/src/main/java/Clojure/Clojure_Interpreter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 34 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Colocalisation_Analysis
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Colocalisation_Analysis/src/main/java/results/SingleWindowDisplay.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Color_Histogram
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Color_Histogram/src/main/java/ColorHistogram_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 4 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Color_Inspector_3D
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Color_Inspector_3D/src/main/java/Color_Inspector_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Colour_Deconvolution
Compiling 8 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/CorrectBleach_
Compiling 33 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Fiji_Plugins
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Fiji_Plugins/src/main/java/Retinex_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/SPIM_Opener
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/SPIM_Opener/src/main/java/spimopener/GaussianStackFocuser.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 155 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/SPIM_Registration
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 59 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Stitching_
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 16 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Descriptor_based_registration
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: deleting '/data/devel/jenkins/jobs/Fiji-minimal/workspace/jars/jai_imageio-1.0.1.jar'
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Dichromacy_
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Differentials_
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Directionality_
Compiling 30 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/imageware
Compiling 5 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/wavelets
Compiling 31 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Extended_Depth_Field
Note: /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Extended_Depth_Field/src/main/java/surfacemap/SurfaceMap3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 5 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Lasso_and_Blow_Tool
Compiling 1 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/Skeletonize3D_
Compiling 117 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/VIB_
/data/devel/jenkins/jobs/Fiji-minimal/workspace/src-plugins/VIB_/src/main/java/marchingcubes/ExportMesh_.java:35: cannot access mpicbg.imglib.type.numeric.RealType
class file for mpicbg.imglib.type.numeric.RealType not found
List mesh = triangulator.getTriangles(
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
1 error
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:446)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:377)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:400)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:377)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:400)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:334)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:290)
at imagej.build.MiniMaven.main(MiniMaven.java:144)
+ update_launcher
+ uptodate /data/devel/jenkins/jobs/Fiji-minimal/workspace/./Build.sh /data/devel/jenkins/jobs/Fiji-minimal/workspace/ImageJ-linux64
+ test -f /data/devel/jenkins/jobs/Fiji-minimal/workspace/ImageJ-linux64
+ cd /data/devel/jenkins/jobs/Fiji-minimal/workspace
+ sh -ax bin/download-launchers.sh release linux64
+ set -e
+ unset CDPATH
+ dirname bin/download-launchers.sh
+ cd bin/..
+ mode=releases
+ platform=linux64
+ groupId=net/imagej
+ artifactId=ij-launcher
+ baseurl=http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher
+ curl http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/maven-metadata.xml
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 651 100 651 0 0 64892 0 --:--:-- --:--:-- --:--:-- 93000
+ metadata=<?xml version="1.0" encoding="UTF-8"?>
<metadata>
<groupId>net.imagej</groupId>
<artifactId>ij-launcher</artifactId>
<versioning>
<latest>2.0.0</latest>
<release>2.0.2</release>
<versions>
<version>2.0.0-beta1</version>
<version>2.0.0-beta2</version>
<version>2.0.0-beta2.1</version>
<version>2.0.0-beta3</version>
<version>2.0.0-beta4</version>
<version>2.0.0-beta5</version>
<version>2.0.0-beta6</version>
<version>2.0.0</version>
<version>2.0.1</version>
<version>2.0.2</version>
</versions>
<lastUpdated>20130722221719</lastUpdated>
</versioning>
</metadata>
+ get version
+ echo <?xml version="1.0" encoding="UTF-8"?>
<metadata>
<groupId>net.imagej</groupId>
<artifactId>ij-launcher</artifactId>
<versioning>
<latest>2.0.0</latest>
<release>2.0.2</release>
<versions>
<version>2.0.0-beta1</version>
<version>2.0.0-beta2</version>
<version>2.0.0-beta2.1</version>
<version>2.0.0-beta3</version>
<version>2.0.0-beta4</version>
<version>2.0.0-beta5</version>
<version>2.0.0-beta6</version>
<version>2.0.0</version>
<version>2.0.1</version>
<version>2.0.2</version>
</versions>
<lastUpdated>20130722221719</lastUpdated>
</versioning>
</metadata>
+ sed -n s/.*<version>\(.*\)<\/version>.*/\1/p
+ tail -n 1
+ version=2.0.2
+ baseurl=http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/2.0.2
+ basename=ij-launcher-2.0.2
+ tmpdir=.tmp.20680
+ mkdir .tmp.20680
+ curl http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/2.0.2/ij-launcher-2.0.2.nar
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 16900 100 16900 0 0 1925k 0 --:--:-- --:--:-- --:--:-- 2750k
+ test -z linux64
+ download_platform linux64
+ download amd64-Linux ImageJ-linux64
+ exe=
+ curl http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/2.0.2/ij-launcher-2.0.2-amd64-Linux-gcc-executable.nar
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 33013 100 33013 0 0 3599k 0 --:--:-- --:--:-- --:--:-- 5373k
+ unzip -p .tmp.20680/amd64-Linux.zip bin/amd64-Linux-gcc/ij-launcher
+ chmod a+x ImageJ-linux64
+ echo ImageJ-linux64
+ sed s/ImageJ-/fiji-/
+ fiji=fiji-linux64
+ cp ImageJ-linux64 fiji-linux64
+ test ! -z linux64
+ cp ImageJ-linux64 ImageJ
+ cp fiji-linux64 fiji
+ rm -rf .tmp.20680
+ test -z fiji-linux64
+ test ! -f /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji-linux64
+ rm /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji-linux64
+ uptodate ImageJ-linux64 fiji
+ test -f fiji
+ test fiji -nt ImageJ-linux64
+ cp ImageJ-linux64 fiji
+ uptodate ImageJ-linux64 ImageJ
+ test -f ImageJ
+ test ImageJ -nt ImageJ-linux64
+ cp ImageJ-linux64 ImageJ
Archiving artifacts
ERROR: No artifacts found that match the file pattern "fiji/bin/*". Configuration error?
ERROR: 'fiji/bin/*' doesn't match anything, but 'bin/*' does. Perhaps that's what you mean?
Build step 'Archive the artifacts' changed build result to FAILURE
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