[ImageJ-builds] Build failed in Jenkins: Fiji-daily #819
jenkins at imagej.net
jenkins at imagej.net
Wed Jul 24 00:00:33 CDT 2013
See <http://jenkins.imagej.net/job/Fiji-daily/819/changes>
Changes:
[Stephan Preibisch] fixed a bug in the fusion that creates different output images
[Stephan Preibisch] removed unnecessary debug messages and comment
[Jenkins] Bump to pom-scijava 1.56
[Johannes Schindelin] .mailmap: attribute two more email addresses properly
[Johannes Schindelin] Fix scope of all those JUnit dependencies
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[...truncated 27457 lines...]
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/vib/TestRigidRegistration.java:138: cannot find symbol
symbol : class Test
location: class vib.TestRigidRegistration
@Test
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/vib/TestRigidRegistration.java:229: cannot find symbol
symbol : class Test
location: class vib.TestRigidRegistration
@Test
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/vib/TestFastMatrix.java:33: cannot find symbol
symbol : class Before
location: class vib.TestFastMatrix
@Before
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/vib/TestFastMatrix.java:81: cannot find symbol
symbol : class Test
location: class vib.TestFastMatrix
@Test
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/vib/TestFastMatrix.java:110: cannot find symbol
symbol : class Test
location: class vib.TestFastMatrix
@Test
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/util/TestPenalty.java:11: cannot find symbol
symbol : class Test
location: class util.TestPenalty
@Test
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/util/TestFindConnectedRegions.java:124: cannot find symbol
symbol : class Before
location: class util.TestFindConnectedRegions
@Before
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/util/TestFindConnectedRegions.java:137: cannot find symbol
symbol : class Test
location: class util.TestFindConnectedRegions
@Test
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/util/TestFindConnectedRegions.java:169: cannot find symbol
symbol : class Test
location: class util.TestFindConnectedRegions
@Test
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/landmarks/TestLoading.java:14: cannot find symbol
symbol : class Test
location: class landmarks.TestLoading
@Test
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/landmarks/TestLoading.java:62: cannot find symbol
symbol : class Test
location: class landmarks.TestLoading
@Test
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/landmarks/TestLoading.java:106: cannot find symbol
symbol : class Test
location: class landmarks.TestLoading
@Test
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/distance/TestEuclidean.java:22: cannot find symbol
symbol : method assertEquals(double,float,double)
location: class distance.TestEuclidean
assertEquals(1.82002747232013,distance,0.0000001);
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/distance/TestMutualInformation.java:27: cannot find symbol
symbol : method assertEquals(double,float,double)
location: class distance.TestMutualInformation
assertEquals( 0.375, mi, 0.0000001 );
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/distance/TestMutualInformation.java:32: cannot find symbol
symbol : method assertEquals(double,float,double)
location: class distance.TestMutualInformation
assertEquals( 0.375, miAfterReset, 0.0000001 );
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/distance/TestMutualInformation.java:46: cannot find symbol
symbol : method assertEquals(double,float,double)
location: class distance.TestMutualInformation
assertEquals( 1.75, h1, 0.0000001 );
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/distance/TestMutualInformation.java:49: cannot find symbol
symbol : method assertEquals(int,float,double)
location: class distance.TestMutualInformation
assertEquals( 2, h2, 0.0000001 );
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/distance/TestMutualInformation.java:52: cannot find symbol
symbol : method assertEquals(double,float,double)
location: class distance.TestMutualInformation
assertEquals( 3.375, h12, 0.0000001 );
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/distance/TestMutualInformation.java:68: cannot find symbol
symbol : method assertEquals(int,long,double)
location: class distance.TestMutualInformation
assertEquals( 1, exampleMeasure.joint[i], 0.0000001 );
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/distance/TestMutualInformation.java:73: cannot find symbol
symbol : method assertEquals(int,float,double)
location: class distance.TestMutualInformation
assertEquals( 8, exampleMeasure.getEntropy1(), 0.0000001 );
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/distance/TestMutualInformation.java:74: cannot find symbol
symbol : method assertEquals(int,float,double)
location: class distance.TestMutualInformation
assertEquals( 8, exampleMeasure.getEntropy2(), 0.0000001 );
^
/data/devel/jenkins/jobs/Fiji-daily/workspace/src-plugins/VIB-lib/src/main/java/distance/TestMutualInformation.java:75: cannot find symbol
symbol : method assertEquals(int,float,double)
location: class distance.TestMutualInformation
assertEquals( 16, exampleMeasure.getJointEntropy(), 0.0000001 );
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
100 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:446)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:377)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:400)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:377)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:400)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:334)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:290)
at imagej.build.MiniMaven.main(MiniMaven.java:144)
+ update_launcher
+ uptodate /data/devel/jenkins/jobs/Fiji-daily/workspace/./Build.sh /data/devel/jenkins/jobs/Fiji-daily/workspace/ImageJ-linux64
+ test -f /data/devel/jenkins/jobs/Fiji-daily/workspace/ImageJ-linux64
+ cd /data/devel/jenkins/jobs/Fiji-daily/workspace
+ sh -ax bin/download-launchers.sh release linux64
+ set -e
+ unset CDPATH
+ dirname bin/download-launchers.sh
+ cd bin/..
+ mode=releases
+ platform=linux64
+ groupId=net/imagej
+ artifactId=ij-launcher
+ baseurl=http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher
+ curl http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/maven-metadata.xml
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 651 100 651 0 0 65817 0 --:--:-- --:--:-- --:--:-- 93000
+ metadata=<?xml version="1.0" encoding="UTF-8"?>
<metadata>
<groupId>net.imagej</groupId>
<artifactId>ij-launcher</artifactId>
<versioning>
<latest>2.0.0</latest>
<release>2.0.2</release>
<versions>
<version>2.0.0-beta1</version>
<version>2.0.0-beta2</version>
<version>2.0.0-beta2.1</version>
<version>2.0.0-beta3</version>
<version>2.0.0-beta4</version>
<version>2.0.0-beta5</version>
<version>2.0.0-beta6</version>
<version>2.0.0</version>
<version>2.0.1</version>
<version>2.0.2</version>
</versions>
<lastUpdated>20130722221719</lastUpdated>
</versioning>
</metadata>
+ get version
+ echo <?xml version="1.0" encoding="UTF-8"?>
<metadata>
<groupId>net.imagej</groupId>
<artifactId>ij-launcher</artifactId>
<versioning>
<latest>2.0.0</latest>
<release>2.0.2</release>
<versions>
<version>2.0.0-beta1</version>
<version>2.0.0-beta2</version>
<version>2.0.0-beta2.1</version>
<version>2.0.0-beta3</version>
<version>2.0.0-beta4</version>
<version>2.0.0-beta5</version>
<version>2.0.0-beta6</version>
<version>2.0.0</version>
<version>2.0.1</version>
<version>2.0.2</version>
</versions>
<lastUpdated>20130722221719</lastUpdated>
</versioning>
</metadata>
+ sed -n s/.*<version>\(.*\)<\/version>.*/\1/p
+ tail -n 1
+ version=2.0.2
+ baseurl=http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/2.0.2
+ basename=ij-launcher-2.0.2
+ tmpdir=.tmp.3865
+ mkdir .tmp.3865
+ curl http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/2.0.2/ij-launcher-2.0.2.nar
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 16900 100 16900 0 0 1776k 0 --:--:-- --:--:-- --:--:-- 2357k
+ test -z linux64
+ download_platform linux64
+ download amd64-Linux ImageJ-linux64
+ exe=
+ curl http://maven.imagej.net/content/repositories/releases/net/imagej/ij-launcher/2.0.2/ij-launcher-2.0.2-amd64-Linux-gcc-executable.nar
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 33013 100 33013 0 0 1432k 0 --:--:-- --:--:-- --:--:-- 1611k
+ unzip -p .tmp.3865/amd64-Linux.zip bin/amd64-Linux-gcc/ij-launcher
+ chmod a+x ImageJ-linux64
+ + sed s/ImageJ-/fiji-/
echo ImageJ-linux64
+ fiji=fiji-linux64
+ cp ImageJ-linux64 fiji-linux64
+ test ! -z linux64
+ cp ImageJ-linux64 ImageJ
+ cp fiji-linux64 fiji
+ rm -rf .tmp.3865
+ test -z fiji-linux64
+ test ! -f /data/devel/jenkins/jobs/Fiji-daily/workspace/fiji-linux64
+ rm /data/devel/jenkins/jobs/Fiji-daily/workspace/fiji-linux64
+ uptodate ImageJ-linux64 fiji
+ test -f fiji
+ test fiji -nt ImageJ-linux64
+ cp ImageJ-linux64 fiji
+ uptodate ImageJ-linux64 ImageJ
+ test -f ImageJ
+ test ImageJ -nt ImageJ-linux64
+ cp ImageJ-linux64 ImageJ
+ ./bin/make-app.py nojre linux64
Exception in thread "main" java.lang.NoClassDefFoundError: org/python/util/jython
Caused by: java.lang.ClassNotFoundException: org.python.util.jython
at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
at java.lang.ClassLoader.loadClass(ClassLoader.java:306)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301)
at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
Could not find the main class: org.python.util.jython. Program will exit.
Build step 'Execute shell' marked build as failure
Archiving artifacts
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