[ImageJ-builds] Build failed in Jenkins: Fiji-Maven #230

Wed Jan 9 15:31:39 CST 2013

See <http://jenkins.imagej.net/job/Fiji-Maven/230/>

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[...truncated 7092 lines...]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/registration_3d/target/registration_3d-2.0.0-SNAPSHOT-sources.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/registration_3d/target/registration_3d-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/registration_3d/2.0.0-SNAPSHOT/registration_3d-2.0.0-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/registration_3d/target/registration_3d-2.0.0-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/registration_3d/2.0.0-SNAPSHOT/registration_3d-2.0.0-SNAPSHOT-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:registration_3d:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:registration_3d:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:registration_3d:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] snapshot sc.fiji:registration_3d:2.0.0-SNAPSHOT: checking for updates from java.net
[INFO] Copying registration_3d-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/plugins
[INFO] Dependency mines-jtk-20100113.jar is already there; skipping
[INFO] Dependency ij-1.47h.jar is already there; skipping
[INFO] ------------------------------------------------------------------------
[INFO] Building jars/weave_jy2java.jar
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/weave_jy2java/src/main/resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 1 source file to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/weave_jy2java/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/weave_jy2java/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/weave_jy2java/target/surefire-reports

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/weave_jy2java/target/weave_jy2java-2.0.0-SNAPSHOT.jar
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/weave_jy2java/target/weave_jy2java-2.0.0-SNAPSHOT-sources.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/weave_jy2java/target/weave_jy2java-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/weave_jy2java/2.0.0-SNAPSHOT/weave_jy2java-2.0.0-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/weave_jy2java/target/weave_jy2java-2.0.0-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/weave_jy2java/2.0.0-SNAPSHOT/weave_jy2java-2.0.0-SNAPSHOT-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:weave_jy2java:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:weave_jy2java:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:weave_jy2java:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] snapshot sc.fiji:weave_jy2java:2.0.0-SNAPSHOT: checking for updates from java.net
[INFO] Copying weave_jy2java-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Dependency fiji-compat-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency javassist-3.14.0-GA.jar is already there; skipping
[INFO] Dependency fiji-scripting-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency bsh-2.0b4.jar is already there; skipping
[INFO] Dependency js-1.7R2.jar is already there; skipping
[INFO] Dependency jython-2.5.2.jar is already there; skipping
[INFO] Dependency ij-1.47h.jar is already there; skipping
[INFO] Dependency Refresh_Javas-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency fake-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency Script_Editor-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency autocomplete-0.4.jar is already there; skipping
[INFO] Dependency commons-math-3.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency fiji-lib-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency imglib2-ij-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency imglib2-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency jfreechart-1.0.14.jar is already there; skipping
[INFO] Dependency jcommon-1.0.17.jar is already there; skipping
[INFO] Dependency xml-apis-1.3.04.jar is already there; skipping
[INFO] Dependency itext-2.1.5.jar is already there; skipping
[INFO] Dependency bcmail-jdk14-138.jar is already there; skipping
[INFO] Dependency bcprov-jdk14-138.jar is already there; skipping
[INFO] Dependency rsyntaxtextarea-1.4.1.jar is already there; skipping
[INFO] Dependency BeanShell_Interpreter-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency CLI_-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency Clojure_Interpreter-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency clojure-1.3.0.jar is already there; skipping
[INFO] Dependency JRuby_Interpreter-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency jruby-1.6.7.2.jar is already there; skipping
[INFO] Dependency Javascript_-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency Jython_Interpreter-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] ------------------------------------------------------------------------
[INFO] Building Aggregator project for the Fiji submodules
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [site:attach-descriptor {execution: default-attach-descriptor}]
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/modules/pom.xml to /var/lib/jenkins/.m2/repository/sc/fiji/pom-fiji-submodules/2.0.0-SNAPSHOT/pom-fiji-submodules-2.0.0-SNAPSHOT.pom
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from java.net
[INFO] 
[INFO] 
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] ------------------------------------------------------------------------
[INFO] Aggregator project for the Fiji project ............... SUCCESS [4.153s]
[INFO] Aggregator project for the Fiji plugins ............... SUCCESS [0.128s]
[INFO] jars/fiji-lib.jar ..................................... SUCCESS [2.129s]
[INFO] jars/pal-optimization.jar ............................. SUCCESS [1.124s]
[INFO] jars/VIB-lib.jar ...................................... SUCCESS [3.788s]
[INFO] plugins/3D_Viewer.jar ................................. SUCCESS [3.831s]
[INFO] plugins/level_sets.jar ................................ SUCCESS [1.296s]
[INFO] plugins/3D_Blob_Segmentation.jar ...................... SUCCESS [0.828s]
[INFO] plugins/3D_Objects_Counter.jar ........................ SUCCESS [0.952s]
[INFO] plugins/Action_Bar.jar ................................ SUCCESS [0.895s]
[INFO] plugins/Algorithm_Launcher.jar ........................ SUCCESS [1.299s]
[INFO] plugins/AnalyzeSkeleton_.jar .......................... SUCCESS [1.025s]
[INFO] plugins/Analyze_Reader_Writer.jar ..................... SUCCESS [0.670s]
[INFO] plugins/Anisotropic_Diffusion_2D.jar .................. SUCCESS [0.741s]
[INFO] plugins/Arrow_.jar .................................... SUCCESS [0.936s]
[INFO] plugins/Auto_Threshold.jar ............................ SUCCESS [1.029s]
[INFO] plugins/BalloonSegmentation_.jar ...................... SUCCESS [1.323s]
[INFO] jars/fiji-compat.jar .................................. SUCCESS [1.347s]
[INFO] jars/fiji-scripting.jar ............................... SUCCESS [1.069s]
[INFO] plugins/BeanShell_Interpreter.jar ..................... SUCCESS [0.748s]
[INFO] plugins/Fiji_Updater.jar .............................. SUCCESS [0.792s]
[INFO] plugins/Bug_Submitter.jar ............................. SUCCESS [0.828s]
[INFO] plugins/CLI_.jar ...................................... SUCCESS [1.140s]
[INFO] plugins/CPU_Meter.jar ................................. SUCCESS [0.630s]
[INFO] plugins/Calculator_Plus.jar ........................... SUCCESS [0.630s]
[INFO] plugins/Clojure_Interpreter.jar ....................... SUCCESS [2.526s]
[INFO] plugins/Colocalisation_Analysis.jar ................... SUCCESS [2.807s]
[INFO] plugins/Color_Histogram.jar ........................... SUCCESS [0.735s]
[INFO] plugins/Color_Inspector_3D.jar ........................ SUCCESS [1.676s]
[INFO] plugins/Colour_Deconvolution.jar ...................... SUCCESS [0.735s]
[INFO] plugins/CorrectBleach_.jar ............................ SUCCESS [0.729s]
[INFO] plugins/Fiji_Plugins.jar .............................. SUCCESS [1.426s]
[INFO] plugins/SPIM_Opener.jar ............................... SUCCESS [1.117s]
[INFO] plugins/SPIM_Registration.jar ......................... SUCCESS [7.519s]
[INFO] plugins/Stitching_.jar ................................ SUCCESS [2.809s]
[INFO] plugins/Descriptor_based_registration.jar ............. SUCCESS [2.216s]
[INFO] plugins/Dichromacy_.jar ............................... SUCCESS [0.622s]
[INFO] plugins/Differentials_.jar ............................ SUCCESS [0.715s]
[INFO] plugins/Directionality_.jar ........................... SUCCESS [1.471s]
[INFO] jars/imageware.jar .................................... SUCCESS [2.807s]
[INFO] jars/wavelets.jar ..................................... SUCCESS [2.363s]
[INFO] plugins/Extended_Depth_Field.jar ...................... SUCCESS [1.690s]
[INFO] plugins/FS_Align_TrakEM2.jar .......................... SUCCESS [4.581s]
[INFO] jars/imagescience.jar ................................. SUCCESS [2.417s]
[INFO] plugins/FeatureJ_.jar ................................. SUCCESS [0.884s]
[INFO] plugins/Feature_Detection.jar ......................... SUCCESS [0.890s]
[INFO] jars/fake.jar ......................................... SUCCESS [1.565s]
[INFO] plugins/JRuby_Interpreter.jar ......................... SUCCESS [0.909s]
[INFO] plugins/Javascript_.jar ............................... SUCCESS [0.759s]
[INFO] plugins/Jython_Interpreter.jar ........................ SUCCESS [0.805s]
[INFO] plugins/Refresh_Javas.jar ............................. SUCCESS [0.830s]
[INFO] plugins/Script_Editor.jar ............................. SUCCESS [2.189s]
[INFO] plugins/Fiji_Developer.jar ............................ SUCCESS [2.098s]
[INFO] plugins/Fiji_Package_Maker.jar ........................ SUCCESS [1.859s]
[INFO] plugins/FlowJ_.jar .................................... SUCCESS [2.335s]
[INFO] plugins/Graph_Cut.jar ................................. SUCCESS [1.116s]
[INFO] plugins/Gray_Morphology.jar ........................... SUCCESS [0.869s]
[INFO] plugins/Helmholtz_Analysis.jar ........................ SUCCESS [2.185s]
[INFO] plugins/IJ_Robot.jar .................................. SUCCESS [0.615s]
[INFO] plugins/IO_.jar ....................................... SUCCESS [2.303s]
[INFO] jars/jep.jar .......................................... SUCCESS [3.360s]
[INFO] plugins/Image_Expression_Parser.jar ................... SUCCESS [1.572s]
[INFO] plugins/Interactive_3D_Surface_Plot.jar ............... SUCCESS [1.411s]
[INFO] plugins/IsoData_Classifier.jar ........................ SUCCESS [0.588s]
[INFO] plugins/Kuwahara_Filter.jar ........................... SUCCESS [0.626s]
[INFO] plugins/LSM_Reader.jar ................................ SUCCESS [0.794s]
[INFO] plugins/LSM_Toolbox.jar ............................... SUCCESS [1.685s]
[INFO] plugins/Lasso_and_Blow_Tool.jar ....................... SUCCESS [0.681s]
[INFO] plugins/Linear_Kuwahara.jar ........................... SUCCESS [0.640s]
[INFO] plugins/LocalThickness_.jar ........................... SUCCESS [0.779s]
[INFO] plugins/MTrack2_.jar .................................. SUCCESS [0.695s]
[INFO] plugins/MTrackJ_.jar .................................. SUCCESS [1.558s]
[INFO] plugins/M_I_P.jar ..................................... SUCCESS [0.747s]
[INFO] plugins/Manual_Tracking.jar ........................... SUCCESS [0.951s]
[INFO] plugins/MosaicJ_.jar .................................. SUCCESS [1.912s]
[INFO] plugins/Multi_Kymograph.jar ........................... SUCCESS [0.693s]
[INFO] plugins/PIV_analyser.jar .............................. SUCCESS [0.796s]
[INFO] plugins/PointPicker_.jar .............................. SUCCESS [1.086s]
[INFO] plugins/QuickPALM_.jar ................................ SUCCESS [1.016s]
[INFO] plugins/RATS_.jar ..................................... SUCCESS [2.212s]
[INFO] plugins/RandomJ_.jar .................................. SUCCESS [0.817s]
[INFO] plugins/Reconstruct_Reader.jar ........................ SUCCESS [1.793s]
[INFO] plugins/Samples_.jar .................................. SUCCESS [0.281s]
[INFO] plugins/Scala_Interpreter.jar ......................... SUCCESS [4.268s]
[INFO] plugins/Series_Labeler.jar ............................ SUCCESS [0.913s]
[INFO] plugins/SheppLogan_.jar ............................... SUCCESS [0.696s]
[INFO] plugins/Skeletonize3D_.jar ............................ SUCCESS [0.759s]
[INFO] plugins/VIB_.jar ...................................... SUCCESS [2.682s]
[INFO] plugins/Simple_Neurite_Tracer.jar ..................... SUCCESS [2.363s]
[INFO] plugins/Siox_Segmentation.jar ......................... SUCCESS [1.493s]
[INFO] plugins/Snakuscule_.jar ............................... SUCCESS [1.024s]
[INFO] plugins/SplineDeformationGenerator_.jar ............... SUCCESS [1.018s]
[INFO] plugins/StackReg_.jar ................................. SUCCESS [1.659s]
[INFO] plugins/Stack_Manipulation.jar ........................ SUCCESS [0.930s]
[INFO] plugins/Statistical_Region_Merging.jar ................ SUCCESS [0.671s]
[INFO] plugins/Sync_Win.jar .................................. SUCCESS [1.135s]
[INFO] plugins/Thread_Killer.jar ............................. SUCCESS [0.585s]
[INFO] plugins/Threshold_Colour.jar .......................... SUCCESS [2.369s]
[INFO] plugins/Time_Stamper.jar .............................. SUCCESS [0.616s]
[INFO] plugins/ToAST_.jar .................................... SUCCESS [0.954s]
[INFO] plugins/TopoJ_.jar .................................... SUCCESS [0.739s]
[INFO] plugins/TrackMate_.jar ................................ SUCCESS [3.843s]
[INFO] plugins/Trainable_Segmentation.jar .................... SUCCESS [3.593s]
[INFO] plugins/TransformJ_.jar ............................... SUCCESS [0.994s]
[INFO] plugins/TurboReg_.jar ................................. SUCCESS [1.529s]
[INFO] plugins/UnwarpJ_.jar .................................. SUCCESS [1.531s]
[INFO] jars/Updater_Fix.jar .................................. SUCCESS [0.658s]
[INFO] plugins/Vaa3d_Reader.jar .............................. SUCCESS [0.777s]
[INFO] plugins/Video_Editing.jar ............................. SUCCESS [0.766s]
[INFO] plugins/View5D_.jar ................................... SUCCESS [2.361s]
[INFO] plugins/Volume_Calculator.jar ......................... SUCCESS [0.950s]
[INFO] plugins/Volume_Viewer.jar ............................. SUCCESS [1.633s]
[INFO] plugins/bUnwarpJ_.jar ................................. SUCCESS [1.985s]
[INFO] plugins/blockmatching_.jar ............................ SUCCESS [1.512s]
[INFO] jars/javac.jar ........................................ SUCCESS [6.644s]
[INFO] jars/mij.jar .......................................... SUCCESS [0.727s]
[INFO] plugins/panorama_.jar ................................. SUCCESS [0.918s]
[INFO] plugins/register_virtual_stack_slices.jar ............. SUCCESS [1.620s]
[INFO] plugins/registration_3d.jar ........................... SUCCESS [1.027s]
[INFO] jars/weave_jy2java.jar ................................ SUCCESS [0.954s]
[INFO] Aggregator project for the Fiji submodules ............ SUCCESS [0.132s]
[INFO] ------------------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 3 minutes 12 seconds
[INFO] Finished at: Wed Jan 09 15:31:39 CST 2013
[INFO] Final Memory: 113M/5072M
[INFO] ------------------------------------------------------------------------
Copied 2 artifacts from "SciJava-common" build number 33
[workspace] $ /bin/sh -xe /tmp/hudson4127265280941786571.sh
+ bin/incremental-deploy.sh
/tmp/hudson4127265280941786571.sh: 2: /tmp/hudson4127265280941786571.sh: bin/incremental-deploy.sh: Permission denied
Build step 'Execute shell' marked build as failure