[ImageJ-builds] Build failed in Jenkins: Fiji-Maven #227
jenkins at imagej.net
jenkins at imagej.net
Wed Jan 9 09:58:04 CST 2013
See <http://jenkins.imagej.net/job/Fiji-Maven/227/changes>
Changes:
[Johannes Schindelin] incremental-deploy: include aggregate POMs
------------------------------------------
[...truncated 7286 lines...]
[INFO] plugins/PIV_analyser.jar .............................. SUCCESS [0.825s]
[INFO] plugins/PointPicker_.jar .............................. SUCCESS [0.974s]
[INFO] plugins/QuickPALM_.jar ................................ SUCCESS [1.014s]
[INFO] plugins/RATS_.jar ..................................... SUCCESS [1.293s]
[INFO] plugins/RandomJ_.jar .................................. SUCCESS [2.356s]
[INFO] plugins/Reconstruct_Reader.jar ........................ SUCCESS [1.966s]
[INFO] plugins/Samples_.jar .................................. SUCCESS [0.435s]
[INFO] plugins/Scala_Interpreter.jar ......................... SUCCESS [3.586s]
[INFO] plugins/Series_Labeler.jar ............................ SUCCESS [0.952s]
[INFO] plugins/SheppLogan_.jar ............................... SUCCESS [0.653s]
[INFO] plugins/Skeletonize3D_.jar ............................ SUCCESS [0.731s]
[INFO] plugins/VIB_.jar ...................................... SUCCESS [2.652s]
[INFO] plugins/Simple_Neurite_Tracer.jar ..................... SUCCESS [2.427s]
[INFO] plugins/Siox_Segmentation.jar ......................... SUCCESS [1.476s]
[INFO] plugins/Snakuscule_.jar ............................... SUCCESS [1.084s]
[INFO] plugins/SplineDeformationGenerator_.jar ............... SUCCESS [1.107s]
[INFO] plugins/StackReg_.jar ................................. SUCCESS [0.981s]
[INFO] plugins/Stack_Manipulation.jar ........................ SUCCESS [1.582s]
[INFO] plugins/Statistical_Region_Merging.jar ................ SUCCESS [0.712s]
[INFO] plugins/Sync_Win.jar .................................. SUCCESS [1.168s]
[INFO] plugins/Thread_Killer.jar ............................. SUCCESS [0.612s]
[INFO] plugins/Threshold_Colour.jar .......................... SUCCESS [0.916s]
[INFO] plugins/Time_Stamper.jar .............................. SUCCESS [2.247s]
[INFO] plugins/ToAST_.jar .................................... SUCCESS [1.080s]
[INFO] plugins/TopoJ_.jar .................................... SUCCESS [0.710s]
[INFO] plugins/TrackMate_.jar ................................ SUCCESS [3.944s]
[INFO] plugins/Trainable_Segmentation.jar .................... SUCCESS [3.124s]
[INFO] plugins/TransformJ_.jar ............................... SUCCESS [1.006s]
[INFO] plugins/TurboReg_.jar ................................. SUCCESS [1.460s]
[INFO] plugins/UnwarpJ_.jar .................................. SUCCESS [1.610s]
[INFO] jars/Updater_Fix.jar .................................. SUCCESS [0.674s]
[INFO] plugins/Vaa3d_Reader.jar .............................. SUCCESS [0.779s]
[INFO] plugins/Video_Editing.jar ............................. SUCCESS [0.839s]
[INFO] plugins/View5D_.jar ................................... SUCCESS [2.649s]
[INFO] plugins/Volume_Calculator.jar ......................... SUCCESS [1.021s]
[INFO] plugins/Volume_Viewer.jar ............................. SUCCESS [1.748s]
[INFO] plugins/bUnwarpJ_.jar ................................. SUCCESS [1.999s]
[INFO] plugins/blockmatching_.jar ............................ SUCCESS [1.627s]
[INFO] jars/javac.jar ........................................ SUCCESS [5.239s]
[INFO] jars/mij.jar .......................................... SUCCESS [2.312s]
[INFO] plugins/panorama_.jar ................................. SUCCESS [0.993s]
[INFO] plugins/register_virtual_stack_slices.jar ............. SUCCESS [1.602s]
[INFO] plugins/registration_3d.jar ........................... SUCCESS [0.964s]
[INFO] jars/weave_jy2java.jar ................................ SUCCESS [0.979s]
[INFO] Aggregator project for the Fiji submodules ............ SUCCESS [0.112s]
[INFO] ------------------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 3 minutes 18 seconds
[INFO] Finished at: Wed Jan 09 09:57:25 CST 2013
[INFO] Final Memory: 108M/5018M
[INFO] ------------------------------------------------------------------------
[workspace] $ /bin/sh -xe /tmp/hudson1326612042338580172.sh
+ bin/incremental-deploy.sh
[/tmp/precompiled.1.jar]
End-of-central-directory signature not found. Either this file is not
a zipfile, or it constitutes one disk of a multi-part archive. In the
latter case the central directory and zipfile comment will be found on
the last disk(s) of this archive.
Deploying modules/
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Building Aggregator project for the Fiji submodules
[INFO] task-segment: [deploy]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] Checking for local modifications: skipped.
[INFO] Updating project files from SCM: skipped.
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Fiji-Maven/workspace/modules && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/modules
[INFO] Storing buildNumber: 12d47a22313b787697ed132def5da1bd91a83286 at timestamp: 1357747048418
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Fiji-Maven/workspace/modules && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/modules
[INFO] Storing buildScmBranch: UNKNOWN
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] Setting rootdir: /data/devel/jenkins/jobs/Fiji-Maven/workspace
[INFO] [site:attach-descriptor {execution: default-attach-descriptor}]
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/modules/pom.xml to /var/lib/jenkins/.m2/repository/sc/fiji/pom-fiji-submodules/2.0.0-SNAPSHOT/pom-fiji-submodules-2.0.0-SNAPSHOT.pom
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] [deploy:deploy {execution: default-deploy}]
[INFO] Retrieving previous build number from imagej.snapshots
[INFO] repository metadata for: 'snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT' could not be found on repository: imagej.snapshots, so will be created
Uploading: http://maven.imagej.net/content/repositories/snapshots/sc/fiji/pom-fiji-submodules/2.0.0-SNAPSHOT/pom-fiji-submodules-2.0.0-20130109.155731-1.pom
Jan 9, 2013 9:57:31 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
2/2K
2K uploaded (pom-fiji-submodules-2.0.0-20130109.155731-1.pom)
[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] repository metadata for: 'artifact sc.fiji:pom-fiji-submodules' could not be found on repository: imagej.snapshots, so will be created
[INFO] Uploading repository metadata for: 'artifact sc.fiji:pom-fiji-submodules'
Jan 9, 2013 9:57:31 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] Retrieving previous metadata from imagej.snapshots
[INFO] repository metadata for: 'snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT' could not be found on repository: imagej.snapshots, so will be created
[INFO] Uploading repository metadata for: 'snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT'
Jan 9, 2013 9:57:31 AM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 5 seconds
[INFO] Finished at: Wed Jan 09 09:57:31 CST 2013
[INFO] Final Memory: 55M/1032M
[INFO] ------------------------------------------------------------------------
[/tmp/precompiled.1.jar]
End-of-central-directory signature not found. Either this file is not
a zipfile, or it constitutes one disk of a multi-part archive. In the
latter case the central directory and zipfile comment will be found on
the last disk(s) of this archive.
Deploying native/FFMPEG_IO/ffmpeg/
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Building FFMPEG
[INFO] task-segment: [deploy]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] Checking for local modifications: skipped.
[INFO] Updating project files from SCM: skipped.
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Fiji-Maven/workspace/native/FFMPEG_IO/ffmpeg && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/native/FFMPEG_IO/ffmpeg
[INFO] Storing buildNumber: 12d47a22313b787697ed132def5da1bd91a83286 at timestamp: 1357747054849
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Fiji-Maven/workspace/native/FFMPEG_IO/ffmpeg && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/native/FFMPEG_IO/ffmpeg
[INFO] Storing buildScmBranch: UNKNOWN
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] Setting rootdir: /data/devel/jenkins/jobs/Fiji-Maven/workspace/native/FFMPEG_IO
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/native/FFMPEG_IO/ffmpeg/src/main/resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 2 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/native/FFMPEG_IO/ffmpeg/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/native/FFMPEG_IO/ffmpeg/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/native/FFMPEG_IO/ffmpeg/target/surefire-reports
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Results :
Tests run: 0, Failures: 0, Errors: 0, Skipped: 0
[INFO] Preparing exec:java
[WARNING] Removing: java from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
Downloading: http://mvnplugins.fusesource.org/repo/release/org/apache/commons/commons-exec/1.1/commons-exec-1.1.pom
[INFO] Unable to find resource 'org.apache.commons:commons-exec:pom:1.1' in repository mvnplugins.fusesource.org (http://mvnplugins.fusesource.org/repo/release)
Downloading: http://maven.imagej.net/content/repositories/releases/org/apache/commons/commons-exec/1.1/commons-exec-1.1.pom
[INFO] Unable to find resource 'org.apache.commons:commons-exec:pom:1.1' in repository imagej.releases (http://maven.imagej.net/content/repositories/releases)
Downloading: http://maven.imagej.net/content/repositories/snapshots/org/apache/commons/commons-exec/1.1/commons-exec-1.1.pom
[INFO] Unable to find resource 'org.apache.commons:commons-exec:pom:1.1' in repository imagej.snapshots (http://maven.imagej.net/content/repositories/snapshots)
Downloading: http://maven.imagej.net/content/repositories/thirdparty/org/apache/commons/commons-exec/1.1/commons-exec-1.1.pom
[INFO] Unable to find resource 'org.apache.commons:commons-exec:pom:1.1' in repository imagej.thirdparty (http://maven.imagej.net/content/repositories/thirdparty)
Downloading: http://repo1.maven.org/maven2/org/apache/commons/commons-exec/1.1/commons-exec-1.1.pom
4/10K
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10K downloaded (commons-exec-1.1.pom)
Downloading: http://mvnplugins.fusesource.org/repo/release/org/apache/commons/commons-exec/1.1/commons-exec-1.1.jar
[INFO] Unable to find resource 'org.apache.commons:commons-exec:jar:1.1' in repository mvnplugins.fusesource.org (http://mvnplugins.fusesource.org/repo/release)
Downloading: http://maven.imagej.net/content/repositories/releases/org/apache/commons/commons-exec/1.1/commons-exec-1.1.jar
[INFO] Unable to find resource 'org.apache.commons:commons-exec:jar:1.1' in repository imagej.releases (http://maven.imagej.net/content/repositories/releases)
Downloading: http://maven.imagej.net/content/repositories/snapshots/org/apache/commons/commons-exec/1.1/commons-exec-1.1.jar
[INFO] Unable to find resource 'org.apache.commons:commons-exec:jar:1.1' in repository imagej.snapshots (http://maven.imagej.net/content/repositories/snapshots)
Downloading: http://maven.imagej.net/content/repositories/thirdparty/org/apache/commons/commons-exec/1.1/commons-exec-1.1.jar
[INFO] Unable to find resource 'org.apache.commons:commons-exec:jar:1.1' in repository imagej.thirdparty (http://maven.imagej.net/content/repositories/thirdparty)
Downloading: http://repo1.maven.org/maven2/org/apache/commons/commons-exec/1.1/commons-exec-1.1.jar
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51K downloaded (commons-exec-1.1.jar)
[INFO] [exec:java {execution: default}]
Cloning into 'ffmpeg'...
Note: checking out '6c3d021891a942403eb644eae0e6378a0dcf8b3c'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:
git checkout -b new_branch_name
HEAD is now at 6c3d021... Properly add HAVE_YASM around yasmified symbols. Should fix compile error on configurations using --disable-yasm.
yasm not found, use --disable-yasm for a crippled build
If you think configure made a mistake, make sure you are using the latest
version from SVN. If the latest version fails, report the problem to the
ffmpeg-user at mplayerhq.hu mailing list or IRC #ffmpeg on irc.freenode.net.
Include the log file "config.log" produced by configure as this will help
solving the problem.
[WARNING]
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.codehaus.mojo.exec.ExecJavaMojo$1.run(ExecJavaMojo.java:297)
at java.lang.Thread.run(Thread.java:662)
Caused by: java.lang.RuntimeException: exit status 1: [./configure, --enable-gpl, --enable-shared, --extra-ldflags=-m64 -Wl,-rpath,\\\$\$\$\$ORIGIN/, --extra-cflags=-m64]
java.io.PrintStream at 2b890c67
at imagej.util.ProcessUtils.exec(ProcessUtils.java:95)
at imagej.util.FileUtils.exec(FileUtils.java:412)
at fiji.ffmpeg.CompileFFMPEG.exec(CompileFFMPEG.java:135)
at fiji.ffmpeg.CompileFFMPEG.main(CompileFFMPEG.java:65)
... 6 more
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] An exception occured while executing the Java class. null
exit status 1: [./configure, --enable-gpl, --enable-shared, --extra-ldflags=-m64 -Wl,-rpath,\\\$\$\$\$ORIGIN/, --extra-cflags=-m64]
java.io.PrintStream at 2b890c67
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 31 seconds
[INFO] Finished at: Wed Jan 09 09:58:04 CST 2013
[INFO] Final Memory: 52M/1029M
[INFO] ------------------------------------------------------------------------
Build step 'Execute shell' marked build as failure
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