[ImageJ-builds] Build failed in Jenkins: Fiji-Maven #217

Sun Jan 6 16:30:59 CST 2013

See <http://jenkins.imagej.net/job/Fiji-Maven/217/>

------------------------------------------
[...truncated 7041 lines...]
[INFO] Dependency fiji-lib-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency imglib2-ij-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency imglib2-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency jfreechart-1.0.14.jar is already there; skipping
[INFO] Dependency jcommon-1.0.17.jar is already there; skipping
[INFO] Dependency xml-apis-1.3.04.jar is already there; skipping
[INFO] Dependency itext-2.1.5.jar is already there; skipping
[INFO] Dependency bcmail-jdk14-138.jar is already there; skipping
[INFO] Dependency bcprov-jdk14-138.jar is already there; skipping
[INFO] Dependency rsyntaxtextarea-1.4.1.jar is already there; skipping
[INFO] Dependency BeanShell_Interpreter-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency CLI_-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency Clojure_Interpreter-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency clojure-1.3.0.jar is already there; skipping
[INFO] Dependency JRuby_Interpreter-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency jruby-1.6.7.2.jar is already there; skipping
[INFO] Dependency Javascript_-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] Dependency Jython_Interpreter-2.0.0-SNAPSHOT.jar is already there; skipping
[INFO] ------------------------------------------------------------------------
[INFO] Building Aggregator project for the Fiji submodules
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [site:attach-descriptor {execution: default-attach-descriptor}]
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/modules/pom.xml to /var/lib/jenkins/.m2/repository/sc/fiji/pom-fiji-submodules/2.0.0-SNAPSHOT/pom-fiji-submodules-2.0.0-SNAPSHOT.pom
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] snapshot sc.fiji:pom-fiji-submodules:2.0.0-SNAPSHOT: checking for updates from java.net
[INFO] 
[INFO] 
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] ------------------------------------------------------------------------
[INFO] Aggregator project for the Fiji project ............... SUCCESS [4.703s]
[INFO] Aggregator project for the Fiji plugins ............... SUCCESS [0.130s]
[INFO] jars/fiji-lib.jar ..................................... SUCCESS [2.509s]
[INFO] jars/pal-optimization.jar ............................. SUCCESS [1.042s]
[INFO] jars/VIB-lib.jar ...................................... SUCCESS [4.006s]
[INFO] plugins/3D_Viewer.jar ................................. SUCCESS [4.121s]
[INFO] plugins/level_sets.jar ................................ SUCCESS [1.224s]
[INFO] plugins/3D_Blob_Segmentation.jar ...................... SUCCESS [0.819s]
[INFO] plugins/3D_Objects_Counter.jar ........................ SUCCESS [0.846s]
[INFO] plugins/Action_Bar.jar ................................ SUCCESS [1.009s]
[INFO] plugins/Algorithm_Launcher.jar ........................ SUCCESS [1.250s]
[INFO] plugins/AnalyzeSkeleton_.jar .......................... SUCCESS [1.050s]
[INFO] plugins/Analyze_Reader_Writer.jar ..................... SUCCESS [0.665s]
[INFO] plugins/Anisotropic_Diffusion_2D.jar .................. SUCCESS [0.719s]
[INFO] plugins/Arrow_.jar .................................... SUCCESS [0.873s]
[INFO] plugins/Auto_Threshold.jar ............................ SUCCESS [0.765s]
[INFO] plugins/BalloonSegmentation_.jar ...................... SUCCESS [1.420s]
[INFO] jars/fiji-compat.jar .................................. SUCCESS [1.348s]
[INFO] jars/fiji-scripting.jar ............................... SUCCESS [1.090s]
[INFO] plugins/BeanShell_Interpreter.jar ..................... SUCCESS [0.761s]
[INFO] plugins/Fiji_Updater.jar .............................. SUCCESS [0.775s]
[INFO] plugins/Bug_Submitter.jar ............................. SUCCESS [0.896s]
[INFO] plugins/CLI_.jar ...................................... SUCCESS [1.131s]
[INFO] plugins/CPU_Meter.jar ................................. SUCCESS [0.668s]
[INFO] plugins/Calculator_Plus.jar ........................... SUCCESS [0.631s]
[INFO] plugins/Clojure_Interpreter.jar ....................... SUCCESS [2.493s]
[INFO] plugins/Colocalisation_Analysis.jar ................... SUCCESS [2.543s]
[INFO] plugins/Color_Histogram.jar ........................... SUCCESS [0.651s]
[INFO] plugins/Color_Inspector_3D.jar ........................ SUCCESS [1.515s]
[INFO] plugins/Colour_Deconvolution.jar ...................... SUCCESS [0.717s]
[INFO] plugins/CorrectBleach_.jar ............................ SUCCESS [0.740s]
[INFO] plugins/Fiji_Plugins.jar .............................. SUCCESS [1.327s]
[INFO] plugins/SPIM_Opener.jar ............................... SUCCESS [1.031s]
[INFO] plugins/SPIM_Registration.jar ......................... SUCCESS [8.513s]
[INFO] plugins/Stitching_.jar ................................ SUCCESS [2.970s]
[INFO] plugins/Descriptor_based_registration.jar ............. SUCCESS [1.678s]
[INFO] plugins/Dichromacy_.jar ............................... SUCCESS [0.628s]
[INFO] plugins/Differentials_.jar ............................ SUCCESS [0.705s]
[INFO] plugins/Directionality_.jar ........................... SUCCESS [0.875s]
[INFO] jars/imageware.jar .................................... SUCCESS [3.074s]
[INFO] jars/wavelets.jar ..................................... SUCCESS [0.837s]
[INFO] plugins/Extended_Depth_Field.jar ...................... SUCCESS [2.462s]
[INFO] plugins/FS_Align_TrakEM2.jar .......................... SUCCESS [4.038s]
[INFO] jars/imagescience.jar ................................. SUCCESS [2.317s]
[INFO] plugins/FeatureJ_.jar ................................. SUCCESS [0.821s]
[INFO] plugins/Feature_Detection.jar ......................... SUCCESS [0.811s]
[INFO] jars/fake.jar ......................................... SUCCESS [3.114s]
[INFO] plugins/JRuby_Interpreter.jar ......................... SUCCESS [0.890s]
[INFO] plugins/Javascript_.jar ............................... SUCCESS [0.725s]
[INFO] plugins/Jython_Interpreter.jar ........................ SUCCESS [0.812s]
[INFO] plugins/Refresh_Javas.jar ............................. SUCCESS [0.855s]
[INFO] plugins/Script_Editor.jar ............................. SUCCESS [2.260s]
[INFO] plugins/Fiji_Developer.jar ............................ SUCCESS [1.376s]
[INFO] plugins/Fiji_Package_Maker.jar ........................ SUCCESS [2.553s]
[INFO] plugins/FlowJ_.jar .................................... SUCCESS [2.584s]
[INFO] plugins/Graph_Cut.jar ................................. SUCCESS [1.040s]
[INFO] plugins/Gray_Morphology.jar ........................... SUCCESS [0.786s]
[INFO] plugins/Helmholtz_Analysis.jar ........................ SUCCESS [0.553s]
[INFO] plugins/IJ_Robot.jar .................................. SUCCESS [0.616s]
[INFO] plugins/IO_.jar ....................................... SUCCESS [1.876s]
[INFO] jars/jep.jar .......................................... SUCCESS [3.315s]
[INFO] plugins/Image_Expression_Parser.jar ................... SUCCESS [2.200s]
[INFO] plugins/Interactive_3D_Surface_Plot.jar ............... SUCCESS [1.227s]
[INFO] plugins/IsoData_Classifier.jar ........................ SUCCESS [0.593s]
[INFO] plugins/Kuwahara_Filter.jar ........................... SUCCESS [0.620s]
[INFO] plugins/LSM_Reader.jar ................................ SUCCESS [0.688s]
[INFO] plugins/LSM_Toolbox.jar ............................... SUCCESS [1.548s]
[INFO] plugins/Lasso_and_Blow_Tool.jar ....................... SUCCESS [2.307s]
[INFO] plugins/Linear_Kuwahara.jar ........................... SUCCESS [0.633s]
[INFO] plugins/LocalThickness_.jar ........................... SUCCESS [0.745s]
[INFO] plugins/MTrack2_.jar .................................. SUCCESS [0.705s]
[INFO] plugins/MTrackJ_.jar .................................. SUCCESS [1.556s]
[INFO] plugins/M_I_P.jar ..................................... SUCCESS [0.752s]
[INFO] plugins/Manual_Tracking.jar ........................... SUCCESS [0.960s]
[INFO] plugins/MosaicJ_.jar .................................. SUCCESS [1.391s]
[INFO] plugins/Multi_Kymograph.jar ........................... SUCCESS [0.698s]
[INFO] plugins/PIV_analyser.jar .............................. SUCCESS [0.680s]
[INFO] plugins/PointPicker_.jar .............................. SUCCESS [0.979s]
[INFO] plugins/QuickPALM_.jar ................................ SUCCESS [0.909s]
[INFO] plugins/RATS_.jar ..................................... SUCCESS [1.300s]
[INFO] plugins/RandomJ_.jar .................................. SUCCESS [0.677s]
[INFO] plugins/Reconstruct_Reader.jar ........................ SUCCESS [2.867s]
[INFO] plugins/Samples_.jar .................................. SUCCESS [0.618s]
[INFO] plugins/Scala_Interpreter.jar ......................... SUCCESS [2.985s]
[INFO] plugins/Series_Labeler.jar ............................ SUCCESS [0.916s]
[INFO] plugins/SheppLogan_.jar ............................... SUCCESS [2.204s]
[INFO] plugins/Skeletonize3D_.jar ............................ SUCCESS [0.611s]
[INFO] plugins/VIB_.jar ...................................... SUCCESS [2.761s]
[INFO] plugins/Simple_Neurite_Tracer.jar ..................... SUCCESS [2.388s]
[INFO] plugins/Siox_Segmentation.jar ......................... SUCCESS [1.401s]
[INFO] plugins/Snakuscule_.jar ............................... SUCCESS [1.022s]
[INFO] plugins/SplineDeformationGenerator_.jar ............... SUCCESS [1.008s]
[INFO] plugins/StackReg_.jar ................................. SUCCESS [0.939s]
[INFO] plugins/Stack_Manipulation.jar ........................ SUCCESS [0.930s]
[INFO] plugins/Statistical_Region_Merging.jar ................ SUCCESS [0.765s]
[INFO] plugins/Sync_Win.jar .................................. SUCCESS [1.028s]
[INFO] plugins/Thread_Killer.jar ............................. SUCCESS [0.590s]
[INFO] plugins/Threshold_Colour.jar .......................... SUCCESS [0.795s]
[INFO] plugins/Time_Stamper.jar .............................. SUCCESS [0.752s]
[INFO] plugins/ToAST_.jar .................................... SUCCESS [0.891s]
[INFO] plugins/TopoJ_.jar .................................... SUCCESS [0.686s]
[INFO] plugins/TrackMate_.jar ................................ SUCCESS [4.478s]
[INFO] plugins/Trainable_Segmentation.jar .................... SUCCESS [3.305s]
[INFO] plugins/TransformJ_.jar ............................... SUCCESS [0.922s]
[INFO] plugins/TurboReg_.jar ................................. SUCCESS [1.522s]
[INFO] plugins/UnwarpJ_.jar .................................. SUCCESS [1.585s]
[INFO] jars/Updater_Fix.jar .................................. SUCCESS [2.710s]
[INFO] plugins/Vaa3d_Reader.jar .............................. SUCCESS [1.619s]
[INFO] plugins/Video_Editing.jar ............................. SUCCESS [0.780s]
[INFO] plugins/View5D_.jar ................................... SUCCESS [1.720s]
[INFO] plugins/Volume_Calculator.jar ......................... SUCCESS [0.976s]
[INFO] plugins/Volume_Viewer.jar ............................. SUCCESS [1.492s]
[INFO] plugins/bUnwarpJ_.jar ................................. SUCCESS [1.985s]
[INFO] plugins/blockmatching_.jar ............................ SUCCESS [1.480s]
[INFO] jars/javac.jar ........................................ SUCCESS [5.202s]
[INFO] jars/mij.jar .......................................... SUCCESS [0.634s]
[INFO] plugins/panorama_.jar ................................. SUCCESS [0.932s]
[INFO] plugins/register_virtual_stack_slices.jar ............. SUCCESS [1.732s]
[INFO] plugins/registration_3d.jar ........................... SUCCESS [0.932s]
[INFO] jars/weave_jy2java.jar ................................ SUCCESS [0.972s]
[INFO] Aggregator project for the Fiji submodules ............ SUCCESS [0.113s]
[INFO] ------------------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESSFUL
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 3 minutes 11 seconds
[INFO] Finished at: Sun Jan 06 16:30:52 CST 2013
[INFO] Final Memory: 145M/5062M
[INFO] ------------------------------------------------------------------------
[workspace] $ /bin/sh -xe /tmp/hudson4672485414653615741.sh
+ bin/incremental-deploy.sh
Deploying src-plugins/Auto_Threshold/
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Building plugins/Auto_Threshold.jar
[INFO]    task-segment: [deploy]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] Checking for local modifications: skipped.
[INFO] Updating project files from SCM: skipped.
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Auto_Threshold && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Auto_Threshold
[INFO] Storing buildNumber: 0bb804335fba95d35491bfe6e08cd15d1ef94ca6 at timestamp: 1357511456531
[INFO] Executing: /bin/sh -c cd /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Auto_Threshold && git rev-parse --verify HEAD
[INFO] Working directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Auto_Threshold
[INFO] Storing buildScmBranch: UNKNOWN
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] Setting rootdir: /data/devel/jenkins/jobs/Fiji-Maven/workspace
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Nothing to compile - all classes are up to date
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Auto_Threshold/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Auto_Threshold/target/surefire-reports

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Auto_Threshold/target/Auto_Threshold-1.14.jar to /var/lib/jenkins/.m2/repository/sc/fiji/Auto_Threshold/1.14/Auto_Threshold-1.14.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/Auto_Threshold/target/Auto_Threshold-1.14-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/Auto_Threshold/1.14/Auto_Threshold-1.14-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] Copying Auto_Threshold-1.14.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/plugins
[INFO] Dependency ij-1.47h.jar is already there; skipping
[INFO] [deploy:deploy {execution: default-deploy}]
Uploading: http://maven.imagej.net/content/repositories/releases/sc/fiji/Auto_Threshold/1.14/Auto_Threshold-1.14.jar
Jan 6, 2013 4:30:59 PM org.apache.commons.httpclient.auth.AuthChallengeProcessor selectAuthScheme
INFO: basic authentication scheme selected
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[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] Error deploying artifact: Failed to transfer file: http://maven.imagej.net/content/repositories/releases/sc/fiji/Auto_Threshold/1.14/Auto_Threshold-1.14.jar. Return code is: 400

[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 5 seconds
[INFO] Finished at: Sun Jan 06 16:30:59 CST 2013
[INFO] Final Memory: 49M/1029M
[INFO] ------------------------------------------------------------------------
Build step 'Execute shell' marked build as failure