[ImageJ-builds] Build failed in Jenkins: Bio-Formats-4-ImageJ-daily #137

jenkins at imagej.net jenkins at imagej.net
Wed Dec 18 00:06:10 CST 2013


See <http://jenkins.imagej.net/job/Bio-Formats-4-ImageJ-daily/137/>

------------------------------------------
[...truncated 612 lines...]
Checksummer (plugins/Scripts/Image/Adjust/Scale_to_DPI.js) 
plugins/Scripts/Image/Adjust/Scale_to_DPI.js done
Checksummer (plugins/Scripts/Image/Color/Set_Color_By_Wavelength.ijm) 
plugins/Scripts/Image/Color/Set_Color_By_Wavelength.ijm done
Checksummer (plugins/Skeletonize3D_-1.0.1-SNAPSHOT.jar) 
plugins/Skeletonize3D_-1.0.1-SNAPSHOT.jar done
Checksummer (plugins/Colour_Deconvolution-2.0.0-SNAPSHOT.jar) 
plugins/Colour_Deconvolution-2.0.0-SNAPSHOT.jar done
Checksummer (plugins/Helmholtz_Analysis-2.0.1-SNAPSHOT.jar) 
plugins/Helmholtz_Analysis-2.0.1-SNAPSHOT.jar done
Checksummer (plugins/LSM_Reader.jar) 
plugins/LSM_Reader.jar done
Checksummer (plugins/Script_Editor-2.0.0-SNAPSHOT.jar) 
plugins/Script_Editor-2.0.0-SNAPSHOT.jar done
Checksummer (plugins/Javascript_-2.0.0-SNAPSHOT.jar) 
plugins/Javascript_-2.0.0-SNAPSHOT.jar done
Checksummer (plugins/TrackMate_-2.1.1-SNAPSHOT.jar) 
plugins/TrackMate_-2.1.1-SNAPSHOT.jar done
Checksummer (plugins/JRuby_Interpreter-2.0.0-SNAPSHOT.jar) 
plugins/JRuby_Interpreter-2.0.0-SNAPSHOT.jar done
Checksummer (plugins/Clojure_Interpreter-2.0.0-SNAPSHOT.jar) 
plugins/Clojure_Interpreter-2.0.0-SNAPSHOT.jar done
Checksummer (plugins/VIB_-2.0.0-SNAPSHOT.jar) 
plugins/VIB_-2.0.0-SNAPSHOT.jar done
Checksummer (plugins/Auto_Threshold-1.16-SNAPSHOT.jar) 
plugins/Auto_Threshold-1.16-SNAPSHOT.jar done
Checksummer (plugins/Trainable_Segmentation-2.0.0-SNAPSHOT.jar) 
plugins/Trainable_Segmentation-2.0.0-SNAPSHOT.jar done
Checksummer (scripts/Miji_Test.m) 
scripts/Miji_Test.m done
Checksummer (scripts/Miji.m) 
scripts/Miji.m done
Checksummer (scripts/Matlab3DViewerDemo_3.m) 
scripts/Matlab3DViewerDemo_3.m done
Checksummer (scripts/Matlab3DViewerDemo_1.m) 
scripts/Matlab3DViewerDemo_1.m done
Checksummer (scripts/importTrackMateTracks.m) 
scripts/importTrackMateTracks.m done
Checksummer (scripts/IsJava3DInstalled.m) 
scripts/IsJava3DInstalled.m done
Checksummer (scripts/Matlab3DViewerDemo_2.m) 
scripts/Matlab3DViewerDemo_2.m done
Checksummer (scripts/Matlab3DViewerIntroduction.m) 
scripts/Matlab3DViewerIntroduction.m done
Checksummer (scripts/bfopen.m) 
scripts/bfopen.m done
Checksummer (scripts/InstallJava3D.m) 
scripts/InstallJava3D.m done
Checksummer (macros/StartupMacros.fiji.ijm) 
macros/StartupMacros.fiji.ijm done
Checksummer (macros/listManagement.txt) 
macros/listManagement.txt done
Checksummer (macros/toolsets/Drawing Tools.txt) 
macros/toolsets/Drawing Tools.txt done
Checksummer (macros/toolsets/Lookup Tables.txt) 
macros/toolsets/Lookup Tables.txt done
Checksummer (macros/toolsets/Clear Custom Tools.txt) 
macros/toolsets/Clear Custom Tools.txt done
Checksummer (luts/ICA2.lut) 
luts/ICA2.lut done
Checksummer (luts/Magenta Hot.lut) 
luts/Magenta Hot.lut done
Checksummer (luts/royal.lut) 
luts/royal.lut done
Checksummer (luts/glow.lut) 
luts/glow.lut done
Checksummer (luts/brgbcmyw.lut) 
luts/brgbcmyw.lut done
Checksummer (luts/cool.lut) 
luts/cool.lut done
Checksummer (luts/thal.lut) 
luts/thal.lut done
Checksummer (luts/phase.lut) 
luts/phase.lut done
Checksummer (luts/6_shades.lut) 
luts/6_shades.lut done
Checksummer (luts/Rainbow RGB.lut) 
luts/Rainbow RGB.lut done
Checksummer (luts/physics.lut) 
luts/physics.lut done
Checksummer (luts/16_colors.lut) 
luts/16_colors.lut done
Checksummer (luts/unionjack.lut) 
luts/unionjack.lut done
Checksummer (luts/thallium.lut) 
luts/thallium.lut done
Checksummer (luts/sepia.lut) 
luts/sepia.lut done
Checksummer (luts/Red Hot.lut) 
luts/Red Hot.lut done
Checksummer (luts/Orange Hot.lut) 
luts/Orange Hot.lut done
Checksummer (luts/ICA3.lut) 
luts/ICA3.lut done
Checksummer (luts/blue_orange_icb.lut) 
luts/blue_orange_icb.lut done
Checksummer (luts/5_ramps.lut) 
luts/5_ramps.lut done
Checksummer (luts/glasbey.lut) 
luts/glasbey.lut done
Checksummer (luts/Thermal.lut) 
luts/Thermal.lut done
Checksummer (luts/Yellow Hot.lut) 
luts/Yellow Hot.lut done
Checksummer (luts/smart.lut) 
luts/smart.lut done
Checksummer (luts/edges.lut) 
luts/edges.lut done
Checksummer (luts/gem.lut) 
luts/gem.lut done
Checksummer (luts/Green Fire Blue.lut) 
luts/Green Fire Blue.lut done
Checksummer (luts/ICA.lut) 
luts/ICA.lut done
Checksummer (luts/Cyan Hot.lut) 
luts/Cyan Hot.lut done
Checksummer (luts/HiLo.lut) 
luts/HiLo.lut done
Checksummer (images/icon.png) 
images/icon.png done
Checksummer (images/icon-flat.png) 
images/icon-flat.png done
Checksummer (Contents/Resources/ImageJ.icns) 
Contents/Resources/ImageJ.icns done
Checksummer (Contents/Resources/Fiji.icns) 
Contents/Resources/Fiji.icns done
Checksummer (Contents/Info.plist) 
Contents/Info.plist done
Checksummer (jars/lwf-stubs-4.4.8.jar) 
jars/lwf-stubs-4.4.8.jar done
Checksummer (jars/clibwrapper_jiio.jar) 
jars/clibwrapper_jiio.jar done
Checksummer (Contents/MacOS/ImageJ-macosx) 
Contents/MacOS/ImageJ-macosx done
Checksummer (Contents/MacOS/ImageJ-tiger) 
Contents/MacOS/ImageJ-tiger done
Checksummer (ImageJ-linux32) 
ImageJ-linux32 done
Checksummer (ImageJ-win32.exe) 
ImageJ-win32.exe done
Checksummer (jars/netcdf-java-4.0.03.jar) 
jars/netcdf-java-4.0.03.jar done
Checksummer (jars/imglib-scripting.jar) 
jars/imglib-scripting.jar done
Checksummer (jars/imglib-io-2.0.0-SNAPSHOT.jar) 
jars/imglib-io-2.0.0-SNAPSHOT.jar done
Checksummer (jars/imglib-algorithms-2.0.0-SNAPSHOT.jar) 
jars/imglib-algorithms-2.0.0-SNAPSHOT.jar done
Checksummer (jars/imglib.jar) 
jars/imglib.jar done
Checksummer (jars/weka.jar) 
jars/weka.jar done
Checksummer (jars/commons-math.jar) 
jars/commons-math.jar done
Checksummer (jars/imglib-ij.jar) 
jars/imglib-ij.jar done
Checksummer (plugins/Daltonize_.jar) 
plugins/Daltonize_.jar done
Checksummer (plugins/Record_Screen.jar) 
plugins/Record_Screen.jar done
Checksummer (plugins/loci_tools.jar) 
plugins/loci_tools.jar done
Checksummer (jars/imglib2-ui.jar) 
jars/imglib2-ui.jar done
Checksummer (jars/jgrapht-jdk1.6.jar) 
jars/jgrapht-jdk1.6.jar done
Checksummer (fiji-linux) 
fiji-linux done
Checksummer (fiji-linux64) 
fiji-linux64 done
Checksummer (fiji-win32.exe) 
fiji-win32.exe done
Checksummer (fiji-win64.exe) 
fiji-win64.exe done
Checksummer (Contents/MacOS/fiji-macosx) 
Contents/MacOS/fiji-macosx done
Checksummer (Contents/MacOS/fiji-tiger) 
Contents/MacOS/fiji-tiger done
Done: Checksummer

Could not update from site 'ImageJ': java.net.SocketException: Connection reset
[INFO] Removing jars/ij-legacy-2.0.0-SNAPSHOT.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-4-ImageJ-daily/workspace/Fiji.app/jars/ij-legacy-2.0.0-beta-7.5.jar
[INFO] Removing jars/javassist.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-4-ImageJ-daily/workspace/Fiji.app/jars/javassist-3.16.1-GA.jar
[INFO] Removing jars/jsch.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-4-ImageJ-daily/workspace/Fiji.app/jars/jsch-0.1.49.jar
[INFO] Removing jars/jfreechart.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-4-ImageJ-daily/workspace/Fiji.app/jars/jfreechart-1.0.14.jar
[INFO] Removing jars/imglib2-algorithms.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-4-ImageJ-daily/workspace/Fiji.app/jars/imglib2-algorithms-2.0.0-beta-20.jar
[INFO] Removing jars/ij.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-4-ImageJ-daily/workspace/Fiji.app/jars/ij-1.48k.jar
[INFO] Removing jars/imglib2.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-4-ImageJ-daily/workspace/Fiji.app/jars/imglib2-2.0.0-beta-20.jar
[INFO] Removing jars/jcommon.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-4-ImageJ-daily/workspace/Fiji.app/jars/jcommon-1.0.17.jar
[INFO] Removing ImageJ-linux64
[INFO] Removing ImageJ-win64.exe
[INFO] Removing jars/ij-launcher.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-4-ImageJ-daily/workspace/Fiji.app/jars/ij-launcher-2.0.2.jar
[INFO] Removing jars/rsyntaxtextarea.jar
[INFO] Deleting obsolete version /data/devel/jenkins/jobs/Bio-Formats-4-ImageJ-daily/workspace/Fiji.app/jars/rsyntaxtextarea-2.0.4.1.jar
Done: Downloading...

Done: Downloading...


--== jars/bio-formats ==--

2013-12-18 00:05:14 URL:http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-stable/lastSuccessfulBuild/artifact/artifacts/bio-formats.jar [1036097/1036097] -> "bio-formats.jar" [1]

--== jars/bio-formats/jai_imageio ==--

2013-12-18 00:05:20 URL:http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-stable/lastSuccessfulBuild/artifact/artifacts/jai_imageio.jar [1030161/1030161] -> "jai_imageio.jar" [1]

--== jars/bio-formats/scifio ==--

2013-12-18 00:05:37 URL:http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-stable/lastSuccessfulBuild/artifact/artifacts/scifio.jar [933260/933260] -> "scifio.jar" [1]

--== jars/loci-common ==--

2013-12-18 00:05:40 URL:http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-stable/lastSuccessfulBuild/artifact/artifacts/loci-common.jar [105934/105934] -> "loci-common.jar" [1]

--== jars/mdbtools-java ==--

2013-12-18 00:05:42 URL:http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-stable/lastSuccessfulBuild/artifact/artifacts/mdbtools-java.jar [86540/86540] -> "mdbtools-java.jar" [1]

--== jars/metakit ==--

2013-12-18 00:05:43 URL:http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-stable/lastSuccessfulBuild/artifact/artifacts/metakit.jar [9332/9332] -> "metakit.jar" [1]

--== jars/ome-xml ==--

2013-12-18 00:05:52 URL:http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-stable/lastSuccessfulBuild/artifact/artifacts/ome-xml.jar [423680/423680] -> "ome-xml.jar" [1]

--== jars/poi-loci ==--

2013-12-18 00:06:06 URL:http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-stable/lastSuccessfulBuild/artifact/artifacts/poi-loci.jar [932531/932531] -> "poi-loci.jar" [1]

--== jars/slf4j-api-1.7.2 ==--

2013-12-18 00:06:07 URL:http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-stable/lastSuccessfulBuild/artifact/artifacts/slf4j-api-1.7.2.jar [26083/26083] -> "slf4j-api-1.7.2.jar" [1]

--== plugins/loci_plugins ==--

2013-12-18 00:06:10 URL:http://hudson.openmicroscopy.org.uk/job/BIOFORMATS-stable/lastSuccessfulBuild/artifact/artifacts/loci_plugins.jar [227595/227595] -> "loci_plugins.jar" [1]
bin/upload-update-site.sh: 66: bin/upload-update-site.sh: ./ImageJ-linux64: not found
Build step 'Execute shell' marked build as failure



More information about the ImageJ-builds mailing list