[ImageJ-builds] Build failed in Jenkins: Fiji-Maven #543

Wed Aug 14 23:23:26 CDT 2013

See <http://jenkins.imagej.net/job/Fiji-Maven/543/changes>

Changes:

[Stephan Saalfeld] increase mpicbg.version to 0.6.1-SNAPSHOT

[Stephan Saalfeld] updated mpicbg to 0.6.1-SNAPSHOT, TrakEM2 to what's been sleeping in

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[...truncated 545 lines...]
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [site:attach-descriptor {execution: default-attach-descriptor}]
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pom.xml to /var/lib/jenkins/.m2/repository/sc/fiji/pom-fiji-plugins/2.0.0-SNAPSHOT/pom-fiji-plugins-2.0.0-SNAPSHOT.pom
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:pom-fiji-plugins:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:pom-fiji-plugins:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:pom-fiji-plugins:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] ------------------------------------------------------------------------
[INFO] Building jars/fiji-lib.jar
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 27 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/surefire-reports

-------------------------------------------------------
 T E S T S
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Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT-sources.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/fiji-lib/2.0.0-SNAPSHOT/fiji-lib-2.0.0-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/fiji-lib/target/fiji-lib-2.0.0-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/fiji-lib/2.0.0-SNAPSHOT/fiji-lib-2.0.0-SNAPSHOT-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:fiji-lib:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:fiji-lib:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:fiji-lib:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] Copying fiji-lib-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Copying ij-1.48a.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] ------------------------------------------------------------------------
[INFO] Building jars/pal-optimization.jar
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/src/main/resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 22 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] No sources to compile
[INFO] [surefire:test {execution: default-test}]
[INFO] No tests to run.
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/surefire-reports

-------------------------------------------------------
 T E S T S
-------------------------------------------------------

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT-sources.jar
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/pal-optimization/2.0.0-SNAPSHOT/pal-optimization-2.0.0-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/pal-optimization/target/pal-optimization-2.0.0-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/pal-optimization/2.0.0-SNAPSHOT/pal-optimization-2.0.0-SNAPSHOT-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:pal-optimization:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:pal-optimization:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:pal-optimization:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] Copying pal-optimization-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] ------------------------------------------------------------------------
[INFO] Building jars/VIB-lib.jar
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 30 resources
[INFO] [compiler:compile {execution: default-compile}]
[INFO] Compiling 180 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/target/classes
[debug] execute contextualize
[INFO] [resources:testResources {execution: default-testResources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/src/test/resources
[INFO] [compiler:testCompile {execution: default-testCompile}]
[INFO] Compiling 10 source files to /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/target/test-classes
[INFO] [surefire:test {execution: default-test}]
[INFO] Surefire report directory: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/target/surefire-reports

-------------------------------------------------------
 T E S T S
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Running distance.TestEuclidean
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.031 sec
Running distance.TestCorrelation
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec
Running distance.TestMutualInformation
Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 sec
Running math3d.TestEigenvalueDecompositions
Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.494 sec
Running vib.TestRigidRegistration
Tests run: 3, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 0.011 sec
Running vib.TestFastMatrix
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec
Running util.TestPenalty
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec
Running util.TestFindConnectedRegions
Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.103 sec
Running landmarks.TestLoading
Tests run: 3, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 0.005 sec

Results :

Tests run: 28, Failures: 0, Errors: 0, Skipped: 6

[INFO] [jar:jar {execution: default-jar}]
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar
[INFO] Preparing source:jar
[WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation.
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[INFO] [source:jar {execution: default}]
[INFO] stacks already added, skipping
[INFO] vib already added, skipping
[INFO] vib/segment already added, skipping
[INFO] Building jar: /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT-sources.jar
[INFO] stacks already added, skipping
[INFO] vib already added, skipping
[INFO] vib/segment already added, skipping
[INFO] [install:install {execution: default-install}]
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT.jar to /var/lib/jenkins/.m2/repository/sc/fiji/VIB-lib/2.0.0-SNAPSHOT/VIB-lib-2.0.0-SNAPSHOT.jar
[INFO] Installing /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/VIB-lib/target/VIB-lib-2.0.0-SNAPSHOT-sources.jar to /var/lib/jenkins/.m2/repository/sc/fiji/VIB-lib/2.0.0-SNAPSHOT/VIB-lib-2.0.0-SNAPSHOT-sources.jar
[INFO] [imagej:copy-jars {execution: copy-jars}]
[INFO] snapshot sc.fiji:VIB-lib:2.0.0-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot sc.fiji:VIB-lib:2.0.0-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot sc.fiji:VIB-lib:2.0.0-SNAPSHOT: checking for updates from imagej.thirdparty
[INFO] Copying VIB-lib-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Copying jama-1.0.2.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Copying fiji-lib-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Dependency ij-1.48a.jar is already there; skipping
[INFO] Copying jzlib-1.0.7.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] Copying pal-optimization-2.0.0-SNAPSHOT.jar to /data/devel/jenkins/jobs/Fiji-Maven/workspace/jars
[INFO] ------------------------------------------------------------------------
[INFO] Building Legacy ImgLib1
[INFO]    task-segment: [install]
[INFO] ------------------------------------------------------------------------
[INFO] [buildnumber:create {execution: default}]
[INFO] [imagej:set-rootdir {execution: set-rootdir}]
[debug] execute contextualize
[INFO] [resources:resources {execution: default-resources}]
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /data/devel/jenkins/jobs/Fiji-Maven/workspace/src-plugins/legacy-imglib1/src/main/resources
[INFO] snapshot mpicbg:mpicbg:0.6.1-SNAPSHOT: checking for updates from imagej.releases
[INFO] snapshot mpicbg:mpicbg:0.6.1-SNAPSHOT: checking for updates from imagej.snapshots
[INFO] snapshot mpicbg:mpicbg:0.6.1-SNAPSHOT: checking for updates from imagej.thirdparty
Downloading: http://maven.imagej.net/content/repositories/releases/mpicbg/mpicbg/0.6.1-SNAPSHOT/mpicbg-0.6.1-SNAPSHOT.pom
[INFO] Unable to find resource 'mpicbg:mpicbg:pom:0.6.1-SNAPSHOT' in repository imagej.releases (http://maven.imagej.net/content/repositories/releases)
Downloading: http://maven.imagej.net/content/repositories/snapshots/mpicbg/mpicbg/0.6.1-SNAPSHOT/mpicbg-0.6.1-SNAPSHOT.pom
[INFO] Unable to find resource 'mpicbg:mpicbg:pom:0.6.1-SNAPSHOT' in repository imagej.snapshots (http://maven.imagej.net/content/repositories/snapshots)
Downloading: http://maven.imagej.net/content/repositories/thirdparty/mpicbg/mpicbg/0.6.1-SNAPSHOT/mpicbg-0.6.1-SNAPSHOT.pom
[INFO] Unable to find resource 'mpicbg:mpicbg:pom:0.6.1-SNAPSHOT' in repository imagej.thirdparty (http://maven.imagej.net/content/repositories/thirdparty)
Downloading: http://maven.imagej.net/content/repositories/releases/mpicbg/mpicbg/0.6.1-SNAPSHOT/mpicbg-0.6.1-SNAPSHOT.jar
[INFO] Unable to find resource 'mpicbg:mpicbg:jar:0.6.1-SNAPSHOT' in repository imagej.releases (http://maven.imagej.net/content/repositories/releases)
Downloading: http://maven.imagej.net/content/repositories/snapshots/mpicbg/mpicbg/0.6.1-SNAPSHOT/mpicbg-0.6.1-SNAPSHOT.jar
[INFO] Unable to find resource 'mpicbg:mpicbg:jar:0.6.1-SNAPSHOT' in repository imagej.snapshots (http://maven.imagej.net/content/repositories/snapshots)
Downloading: http://maven.imagej.net/content/repositories/thirdparty/mpicbg/mpicbg/0.6.1-SNAPSHOT/mpicbg-0.6.1-SNAPSHOT.jar
[INFO] Unable to find resource 'mpicbg:mpicbg:jar:0.6.1-SNAPSHOT' in repository imagej.thirdparty (http://maven.imagej.net/content/repositories/thirdparty)
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] Failed to resolve artifact.

Missing:
----------
1) mpicbg:mpicbg:jar:0.6.1-SNAPSHOT

  Try downloading the file manually from the project website.

  Then, install it using the command: 
      mvn install:install-file -DgroupId=mpicbg -DartifactId=mpicbg -Dversion=0.6.1-SNAPSHOT -Dpackaging=jar -Dfile=/path/to/file

  Alternatively, if you host your own repository you can deploy the file there: 
      mvn deploy:deploy-file -DgroupId=mpicbg -DartifactId=mpicbg -Dversion=0.6.1-SNAPSHOT -Dpackaging=jar -Dfile=/path/to/file -Durl=[url] -DrepositoryId=[id]

  Path to dependency: 
  	1) sc.fiji:legacy-imglib1:jar:2.0.0-SNAPSHOT
  	2) mpicbg:mpicbg:jar:0.6.1-SNAPSHOT

----------
1 required artifact is missing.

for artifact: 
  sc.fiji:legacy-imglib1:jar:2.0.0-SNAPSHOT

from the specified remote repositories:
  imagej.releases (http://maven.imagej.net/content/repositories/releases),
  central (http://repo1.maven.org/maven2),
  imagej.snapshots (http://maven.imagej.net/content/repositories/snapshots),
  imagej.thirdparty (http://maven.imagej.net/content/repositories/thirdparty)

[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 23 seconds
[INFO] Finished at: Wed Aug 14 23:23:26 CDT 2013
[INFO] Final Memory: 90M/395M
[INFO] ------------------------------------------------------------------------
Build step 'Invoke top-level Maven targets' marked build as failure