[ImageJ-builds] Build failed in Jenkins: fiji-core #804
Jenkins Daemon
jenkins at qa.nest-initiative.org
Wed Aug 14 14:04:02 CDT 2013
See <https://qa.nest-initiative.org/job/fiji-core/804/changes>
Changes:
[saalfeld] increase mpicbg.version to 0.6.1-SNAPSHOT
[saalfeld] updated mpicbg to 0.6.1-SNAPSHOT, TrakEM2 to what's been sleeping in
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[...truncated 266 lines...]
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/SliceTransformableExtraction.java>:51: cannot find symbol
symbol : class InvertibleCoordinateTransform
location: class mpicbg.imglib.image.display.imagej.SliceTransformableExtraction<T>
final InvertibleCoordinateTransform transform;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/InverseTransformDescription.java>:42: cannot find symbol
symbol : class InvertibleBoundable
location: class mpicbg.imglib.image.display.imagej.InverseTransformDescription<T>
final InvertibleBoundable transform;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/InverseTransformDescription.java>:48: cannot find symbol
symbol : class InvertibleBoundable
location: class mpicbg.imglib.image.display.imagej.InverseTransformDescription<T>
public InverseTransformDescription( final InvertibleBoundable transform, final InterpolatorFactory<T> factory, final Image<T> image )
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/InverseTransformDescription.java>:57: cannot find symbol
symbol : class InvertibleBoundable
location: class mpicbg.imglib.image.display.imagej.InverseTransformDescription<T>
public InvertibleBoundable getTransform() { return transform; }
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/ImageJVirtualDisplay.java>:40: package mpicbg.models does not exist
import mpicbg.models.InvertibleCoordinateTransform;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/ImageJVirtualDisplay.java>:41: package mpicbg.models does not exist
import mpicbg.models.NoninvertibleModelException;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/fn/AbstractAffine3D.java>:41: package mpicbg.models does not exist
import mpicbg.models.AffineModel2D;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/fn/AbstractAffine3D.java>:42: package mpicbg.models does not exist
import mpicbg.models.AffineModel3D;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/SubpixelLocalization.java>:168: cannot find symbol
symbol : class Matrix
location: class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization<T>
Matrix A, B, X;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/SubpixelLocalization.java>:326: cannot find symbol
symbol : class Matrix
location: class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization<T>
final Matrix matrix = getMatrix( matrixImage );
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/SubpixelLocalization.java>:367: cannot find symbol
symbol : class Matrix
location: class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization<T>
final Matrix matrix;
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/SubpixelLocalization.java>:371: cannot find symbol
symbol : class Matrix
location: class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization<T>
matrix = new Matrix( maxtrixImage.getDimension( 0 ), 1 );
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/SubpixelLocalization.java>:386: cannot find symbol
symbol : class Matrix
location: class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization<T>
matrix = new Matrix( maxtrixImage.getDimension( 0 ), maxtrixImage.getDimension( 1 ) );
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/SubpixelLocalization.java>:411: cannot find symbol
symbol : class SingularValueDecomposition
location: class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization<T>
final SingularValueDecomposition svd = new SingularValueDecomposition( M );
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/SubpixelLocalization.java>:411: cannot find symbol
symbol : class SingularValueDecomposition
location: class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization<T>
final SingularValueDecomposition svd = new SingularValueDecomposition( M );
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/SubpixelLocalization.java>:413: cannot find symbol
symbol : class Matrix
location: class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization<T>
Matrix U = svd.getU(); // U Left Matrix
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/SubpixelLocalization.java>:414: cannot find symbol
symbol : class Matrix
location: class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization<T>
final Matrix S = svd.getS(); // W
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/scalespace/SubpixelLocalization.java>:415: cannot find symbol
symbol : class Matrix
location: class mpicbg.imglib.algorithm.scalespace.SubpixelLocalization<T>
final Matrix V = svd.getV(); // VT Right Matrix
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/math/NormalizeImageMinMax.java>:91: cannot find symbol
symbol : class RealSum
location: class mpicbg.imglib.algorithm.math.NormalizeImageMinMax<T>
final RealSum sum = new RealSum();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/math/NormalizeImageMinMax.java>:91: cannot find symbol
symbol : class RealSum
location: class mpicbg.imglib.algorithm.math.NormalizeImageMinMax<T>
final RealSum sum = new RealSum();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/math/NormalizeImageFloat.java>:56: cannot find symbol
symbol : class RealSum
location: class mpicbg.imglib.algorithm.math.NormalizeImageFloat<T>
final RealSum sum = new RealSum();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/math/NormalizeImageFloat.java>:56: cannot find symbol
symbol : class RealSum
location: class mpicbg.imglib.algorithm.math.NormalizeImageFloat<T>
final RealSum sum = new RealSum();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/peak/LevenbergMarquardtSolver.java>:120: cannot find symbol
symbol : class Matrix
location: class mpicbg.imglib.algorithm.peak.LevenbergMarquardtSolver
d = (new Matrix(H)).lu().solve(new Matrix(g, nparm)).getRowPackedCopy();
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<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/peak/LevenbergMarquardtSolver.java>:120: cannot find symbol
symbol : class Matrix
location: class mpicbg.imglib.algorithm.peak.LevenbergMarquardtSolver
d = (new Matrix(H)).lu().solve(new Matrix(g, nparm)).getRowPackedCopy();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/peak/LevenbergMarquardtSolver.java>:126: cannot find symbol
symbol : class Matrix
location: class mpicbg.imglib.algorithm.peak.LevenbergMarquardtSolver
double[] na = (new Matrix(a, nparm)).plus(new Matrix(d, nparm)).getRowPackedCopy();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/peak/LevenbergMarquardtSolver.java>:126: cannot find symbol
symbol : class Matrix
location: class mpicbg.imglib.algorithm.peak.LevenbergMarquardtSolver
double[] na = (new Matrix(a, nparm)).plus(new Matrix(d, nparm)).getRowPackedCopy();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/transformation/ImageTransform.java>:77: cannot find symbol
symbol : class AffineModel3D
location: class mpicbg.imglib.algorithm.transformation.ImageTransform<T>
if ( transform instanceof AffineModel3D ||
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/transformation/ImageTransform.java>:78: cannot find symbol
symbol : class AffineModel2D
location: class mpicbg.imglib.algorithm.transformation.ImageTransform<T>
transform instanceof AffineModel2D ||
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/transformation/ImageTransform.java>:79: cannot find symbol
symbol : class TranslationModel3D
location: class mpicbg.imglib.algorithm.transformation.ImageTransform<T>
transform instanceof TranslationModel3D ||
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/transformation/ImageTransform.java>:80: cannot find symbol
symbol : class TranslationModel2D
location: class mpicbg.imglib.algorithm.transformation.ImageTransform<T>
transform instanceof TranslationModel2D ||
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/transformation/ImageTransform.java>:81: cannot find symbol
symbol : class RigidModel2D
location: class mpicbg.imglib.algorithm.transformation.ImageTransform<T>
transform instanceof RigidModel2D )
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/algorithm/transformation/ImageTransform.java>:212: cannot find symbol
symbol : class NoninvertibleModelException
location: class mpicbg.imglib.algorithm.transformation.ImageTransform<T>
catch ( NoninvertibleModelException e )
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/SliceTransformableExtraction.java>:77: cannot find symbol
symbol : class AffineModel2D
location: class mpicbg.imglib.image.display.imagej.SliceTransformableExtraction<T>
if ( AffineModel2D.class.isInstance( desc.getTransform() ) ||
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/SliceTransformableExtraction.java>:78: cannot find symbol
symbol : class AffineModel3D
location: class mpicbg.imglib.image.display.imagej.SliceTransformableExtraction<T>
AffineModel3D.class.isInstance( desc.getTransform() ) ||
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/SliceTransformableExtraction.java>:79: cannot find symbol
symbol : class RigidModel2D
location: class mpicbg.imglib.image.display.imagej.SliceTransformableExtraction<T>
RigidModel2D.class.isInstance( desc.getTransform() ) ||
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/SliceTransformableExtraction.java>:80: cannot find symbol
symbol : class TranslationModel2D
location: class mpicbg.imglib.image.display.imagej.SliceTransformableExtraction<T>
TranslationModel2D.class.isInstance( desc.getTransform() ) ||
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/SliceTransformableExtraction.java>:81: cannot find symbol
symbol : class TranslationModel3D
location: class mpicbg.imglib.image.display.imagej.SliceTransformableExtraction<T>
TranslationModel3D.class.isInstance( desc.getTransform() ) )
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/SliceTransformableExtraction.java>:269: cannot find symbol
symbol : class NoninvertibleModelException
location: class mpicbg.imglib.image.display.imagej.SliceTransformableExtraction<T>
catch ( NoninvertibleModelException e )
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/ImageJVirtualDisplay.java>:172: cannot find symbol
symbol : class InvertibleCoordinateTransform
location: class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay<T>
final InvertibleCoordinateTransform transform = desc.getTransform();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/mpicbg/imglib/image/display/imagej/ImageJVirtualDisplay.java>:202: cannot find symbol
symbol : class NoninvertibleModelException
location: class mpicbg.imglib.image.display.imagej.ImageJVirtualDisplay<T>
catch ( NoninvertibleModelException e )
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/fn/AbstractAffine3D.java>:172: cannot find symbol
symbol : class AffineModel2D
location: class script.imglib.algorithm.fn.AbstractAffine3D<T>
AffineModel2D aff = new AffineModel2D();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/fn/AbstractAffine3D.java>:172: cannot find symbol
symbol : class AffineModel2D
location: class script.imglib.algorithm.fn.AbstractAffine3D<T>
AffineModel2D aff = new AffineModel2D();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/fn/AbstractAffine3D.java>:180: cannot find symbol
symbol : class AffineModel3D
location: class script.imglib.algorithm.fn.AbstractAffine3D<T>
AffineModel3D aff = new AffineModel3D();
^
<https://qa.nest-initiative.org/job/fiji-core/ws/src-plugins/legacy-imglib1/src/main/java/script/imglib/algorithm/fn/AbstractAffine3D.java>:180: cannot find symbol
symbol : class AffineModel3D
location: class script.imglib.algorithm.fn.AbstractAffine3D<T>
AffineModel3D aff = new AffineModel3D();
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
73 errors
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:83)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:446)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:377)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:400)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:377)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:400)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:334)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:329)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:290)
at imagej.build.MiniMaven.main(MiniMaven.java:144)
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 651 100 651 0 0 2048 0 --:--:-- --:--:-- --:--:-- 3969
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 16900 100 16900 0 0 33142 0 --:--:-- --:--:-- --:--:-- 49415
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 30341 100 30341 0 0 59651 0 --:--:-- --:--:-- --:--:-- 88457
++ uname -m
+ test i686 = x86_64
+ PLATFORM=linux
+ ./bin/make-app.py nojre linux
Error: Could not find or load main class org.python.util.jython
Build step 'Execute shell' marked build as failure
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