[ImageJ-builds] Build failed in Jenkins: fiji-windows-core #378
Jenkins Daemon
jenkins at qa.nest-initiative.org
Fri Apr 5 17:04:28 CDT 2013
See <https://qa.nest-initiative.org/job/fiji-windows-core/378/changes>
Changes:
[Johannes Schindelin] Do not hard-code the scijava-common version in Build.sh
[Johannes Schindelin] Bump ImageJ2 yet again
------------------------------------------
[...truncated 44 lines...]
++ test -d ''
++ test -n win64
++ test -d /c/jenkins/workspace/fiji-windows-core/java/win64
+++ ls -t /c/jenkins/workspace/fiji-windows-core/java/win64
+++ head -n 1
++ echo /c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre
+ JAVA_HOME=/c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre
+ test -z win64
+ test -f /c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre/lib/tools.jar
+ test -f /c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre/../lib/tools.jar
+ case "$JAVA_HOME" in
+ test -n /c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre
+ test -d /c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre
+ test -d /c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre
+ test -d /c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre/jre
+ export PATH=/c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre/bin:/bin:/mingw/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin
+ PATH=/c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre/bin:/bin:/mingw/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin
++ get_java_home
++ test -d /c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre
++ echo /c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre
++ get_java_home
++ test -d /c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre
++ echo /c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre
+ PATH=/c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre/bin:/bin:/mingw/bin:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0/:/usr/bin:/usr/mingw/bin:/c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre/bin:/c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre/../bin
+ export PATH
+ case "$UNAME_S" in
++ cd /c/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre
++ pwd -W
+ export JAVA_HOME=c:/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre
+ JAVA_HOME=c:/jenkins/workspace/fiji-windows-core/java/win64/jdk1.6.0_24/jre
++ uname -s
+ test Darwin = MINGW32_NT-6.1
+ case "$CWD" in
+ ARGV0=/c/jenkins/workspace/fiji-windows-core/./Build.sh
+ SCIJAVA_COMMON=/c/jenkins/workspace/fiji-windows-core/modules/scijava-common
+ MAVEN_DOWNLOAD=/c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh
+ VERSION=2.0.0-SNAPSHOT
+ maven_update sc.fiji:javac:2.0.0-SNAPSHOT net.imagej:ij-minimaven:2.0.0-SNAPSHOT net.imagej:ij-updater-ssh:2.0.0-SNAPSHOT
+ force_update=
+ uptodate /c/jenkins/workspace/fiji-windows-core/./Build.sh /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh
+ test -f /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh
+ test /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh -nt /c/jenkins/workspace/fiji-windows-core/./Build.sh
+ force_update=t
+ test -d /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/.git
+ cd /c/jenkins/workspace/fiji-windows-core/modules/scijava-common
+ git pull -k
>From git://github.com/scijava/scijava-common
4336758..aab7fb8 master -> origin/master
>From git://github.com/scijava/scijava-common
* [new tag] scijava-common-1.0.0 -> scijava-common-1.0.0
Updating 4336758..aab7fb8
Fast-forward
pom-scijava/pom.xml | 4 +-
pom.xml | 35 +++----
src/main/java/org/scijava/Context.java | 112 ++++----------------
src/main/java/org/scijava/app/AbstractApp.java | 97 +++++++++++++++++
src/main/java/org/scijava/app/App.java | 99 +++++++++++++++++
src/main/java/org/scijava/app/AppService.java | 59 ++++++++++
.../java/org/scijava/app/DefaultAppService.java | 108 +++++++++++++++++++
.../{event => app}/DefaultStatusService.java | 16 +++-
src/main/java/org/scijava/app/SciJavaApp.java | 66 ++++++++++++
.../org/scijava/{event => app}/StatusService.java | 13 ++-
.../org/scijava/{ => app}/event/StatusEvent.java | 4 +-
.../java/org/scijava/input/InputModifiers.java | 2 +-
src/main/java/org/scijava/plugin/Attr.java | 2 +-
.../org/scijava/plugin/DefaultPluginFinder.java | 43 ++++----
.../org/scijava/plugin/DefaultPluginService.java | 31 +++++-
src/main/java/org/scijava/plugin/PluginFinder.java | 12 ++-
src/main/java/org/scijava/plugin/PluginIndex.java | 45 ++++++--
17 files changed, 598 insertions(+), 150 deletions(-)
create mode 100644 src/main/java/org/scijava/app/AbstractApp.java
create mode 100644 src/main/java/org/scijava/app/App.java
create mode 100644 src/main/java/org/scijava/app/AppService.java
create mode 100644 src/main/java/org/scijava/app/DefaultAppService.java
rename src/main/java/org/scijava/{event => app}/DefaultStatusService.java (88%)
create mode 100644 src/main/java/org/scijava/app/SciJavaApp.java
rename src/main/java/org/scijava/{event => app}/StatusService.java (86%)
rename src/main/java/org/scijava/{ => app}/event/StatusEvent.java (98%)
+ test '!' -f /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh
+ touch /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh
+ for gav in '"$@"'
+ artifactId=javac:2.0.0-SNAPSHOT
+ version=2.0.0-SNAPSHOT
+ artifactId=javac
+ path=jars/javac-2.0.0-SNAPSHOT.jar
+ test -z t
+ rm -f jars/javac-2.0.0-SNAPSHOT.jar
+ cd /c/jenkins/workspace/fiji-windows-core
+ test -f jars/javac.jar
+ for file in 'jars/"$artifactId"-[0-9]*.jar'
+ test 'ajars/javac-[0-9]*.jar' = ajars/javac-2.0.0-SNAPSHOT.jar
+ test -f 'jars/javac-[0-9]*.jar'
+ continue
+ uptodate /c/jenkins/workspace/fiji-windows-core/./Build.sh jars/javac-2.0.0-SNAPSHOT.jar
+ test -f jars/javac-2.0.0-SNAPSHOT.jar
+ echo 'Downloading sc.fiji:javac:2.0.0-SNAPSHOT'
Downloading sc.fiji:javac:2.0.0-SNAPSHOT
+ cd jars/
+ sh /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh install sc.fiji:javac:2.0.0-SNAPSHOT
+ test '!' -f jars/javac-2.0.0-SNAPSHOT.jar
+ for gav in '"$@"'
+ artifactId=ij-minimaven:2.0.0-SNAPSHOT
+ version=2.0.0-SNAPSHOT
+ artifactId=ij-minimaven
+ path=jars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ test -z t
+ rm -f jars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ cd /c/jenkins/workspace/fiji-windows-core
+ test -f jars/ij-minimaven.jar
+ for file in 'jars/"$artifactId"-[0-9]*.jar'
+ test 'ajars/ij-minimaven-[0-9]*.jar' = ajars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ test -f 'jars/ij-minimaven-[0-9]*.jar'
+ continue
+ uptodate /c/jenkins/workspace/fiji-windows-core/./Build.sh jars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ test -f jars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ echo 'Downloading net.imagej:ij-minimaven:2.0.0-SNAPSHOT'
Downloading net.imagej:ij-minimaven:2.0.0-SNAPSHOT
+ cd jars/
+ sh /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh install net.imagej:ij-minimaven:2.0.0-SNAPSHOT
+ test '!' -f jars/ij-minimaven-2.0.0-SNAPSHOT.jar
+ for gav in '"$@"'
+ artifactId=ij-updater-ssh:2.0.0-SNAPSHOT
+ version=2.0.0-SNAPSHOT
+ artifactId=ij-updater-ssh
+ path=jars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ test -z t
+ rm -f jars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ cd /c/jenkins/workspace/fiji-windows-core
+ test -f jars/ij-updater-ssh.jar
+ for file in 'jars/"$artifactId"-[0-9]*.jar'
+ test 'ajars/ij-updater-ssh-[0-9]*.jar' = ajars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ test -f 'jars/ij-updater-ssh-[0-9]*.jar'
+ continue
+ uptodate /c/jenkins/workspace/fiji-windows-core/./Build.sh jars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ test -f jars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ echo 'Downloading net.imagej:ij-updater-ssh:2.0.0-SNAPSHOT'
Downloading net.imagej:ij-updater-ssh:2.0.0-SNAPSHOT
+ cd jars/
+ sh /c/jenkins/workspace/fiji-windows-core/modules/scijava-common/bin/maven-helper.sh install net.imagej:ij-updater-ssh:2.0.0-SNAPSHOT
+ test '!' -f jars/ij-updater-ssh-2.0.0-SNAPSHOT.jar
+ OPTIONS='-Dimagej.app.directory="/c/jenkins/workspace/fiji-windows-core"'
+ test 3 -gt 0
+ case "$1" in
+ OPTIONS='-Dimagej.app.directory="/c/jenkins/workspace/fiji-windows-core" -Dminimaven.updateinterval=1'
+ shift
+ test 2 -gt 0
+ case "$1" in
+ break
+ test 2 = 0
+ for name in '"$@"'
+ case "$name" in
+ artifactId=--
+ artifactId=--
+ artifactId=--
+ case "$name" in
+ eval sh /c/jenkins/workspace/fiji-windows-core/bin/ImageJ.sh --mini-maven '-Dimagej.app.directory="/c/jenkins/workspace/fiji-windows-core" -Dminimaven.updateinterval=1' -DartifactId=-- install
++ sh /c/jenkins/workspace/fiji-windows-core/bin/ImageJ.sh --mini-maven -Dimagej.app.directory=/c/jenkins/workspace/fiji-windows-core -Dminimaven.updateinterval=1 -DartifactId=-- install
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Compiling 26 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 22 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization
Compiling 190 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 121 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 35 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\level_sets
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Blob_Segmentation
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Blob_Segmentation\src\main\java\ij3d\segmentation\Blob_Segmentation_in_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Blob_Segmentation\src\main\java\ij3d\segmentation\Blob_Segmentation_in_3D.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 4 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Objects_Counter
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Objects_Counter\src\main\java\Utilities\Counter3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 3 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Algorithm_Launcher
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Algorithm_Launcher\src\main\java\AlgorithmInfo.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 6 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\AnalyzeSkeleton_
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\AnalyzeSkeleton_\src\main\java\skeleton_analysis\AnalyzeSkeleton_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Analyze_Reader_Writer
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Anisotropic_Diffusion_2D
Compiling 3 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Arrow_
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Auto_Threshold
Compiling 8 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\BalloonSegmentation_\src\main\java\BalloonSegmentation_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 26 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 3 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Skipping invalid dependency (version unset): com.miglayout/miglayout-null-swing
Exception in thread "main" java.lang.NullPointerException
at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:907)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:716)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:747)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:747)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:704)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:394)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:330)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:325)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:325)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:287)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
+ for name in '"$@"'
+ case "$name" in
+ artifactId=verbose=true
+ artifactId=verbose=true
+ artifactId=verbose=true
+ case "$name" in
+ eval sh /c/jenkins/workspace/fiji-windows-core/bin/ImageJ.sh --mini-maven '-Dimagej.app.directory="/c/jenkins/workspace/fiji-windows-core" -Dminimaven.updateinterval=1' -DartifactId=verbose=true install
++ sh /c/jenkins/workspace/fiji-windows-core/bin/ImageJ.sh --mini-maven -Dimagej.app.directory=/c/jenkins/workspace/fiji-windows-core -Dminimaven.updateinterval=1 -DartifactId=verbose=true install
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Exception in thread "main" java.lang.NullPointerException
at imagej.build.minimaven.MavenProject.findPOM(MavenProject.java:907)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:716)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:747)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:747)
at imagej.build.minimaven.MavenProject.getDependencies(MavenProject.java:704)
at imagej.build.minimaven.MavenProject.checkUpToDate(MavenProject.java:194)
at imagej.build.minimaven.MavenProject.upToDate(MavenProject.java:179)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:388)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:330)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:325)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:325)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:287)
at imagej.build.MiniMaven.main(MiniMaven.java:138)
Build step 'Execute shell' marked build as failure
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