[ImageJ-builds] Build failed in Jenkins: Fiji-daily #686
jenkins at imagej.net
jenkins at imagej.net
Tue Apr 2 00:02:00 CDT 2013
See <http://jenkins.imagej.net/job/Fiji-daily/686/>
------------------------------------------
Started by timer
Building on master
Checkout:workspace / <http://jenkins.imagej.net/job/Fiji-daily/ws/> - hudson.remoting.LocalChannel at 518d3b19
Using strategy: Default
Last Built Revision: Revision 3494166ce42b046d4758aab3fc13f570d5752a77 (origin/master)
Checkout:workspace / <http://jenkins.imagej.net/job/Fiji-daily/ws/> - hudson.remoting.LocalChannel at 518d3b19
GitAPI created
Fetching changes from the remote Git repository
Fetching upstream changes from git://github.com/fiji/fiji
[workspace] $ git fetch -t git://github.com/fiji/fiji +refs/heads/*:refs/remotes/origin/*
>From git://github.com/fiji/fiji
3494166..e7106ed master -> origin/master
Fetching submodule modules/ImageJA
>From git://github.com/fiji/ImageJA
c14ee4a..c6b7fb9 current -> origin/current
6db0f19..8cb07b0 ijplugins -> origin/ijplugins
ff123fa..dbb719b imagej -> origin/imagej
1b65770..abb5fcb master -> origin/master
335cb25..caf5fe0 tools -> origin/tools
Fetching submodule modules/ij-plugins
p11-kit: couldn't load module: /usr/lib/x86_64-linux-gnu/pkcs11/gnome-keyring-pkcs11.so: /usr/lib/x86_64-linux-gnu/pkcs11/gnome-keyring-pkcs11.so: cannot open shared object file: No such file or directory
warning: no common commits
>From http://fiji.sc/ij-plugins/
+ 25e9f08...1cb5ebe svn/trunk -> origin/svn/trunk (forced update)
Fetching submodule modules/imagej2
>From git://github.com/imagej/imagej
f742dab..a0e38dd HEAD -> origin/HEAD
* [new branch] axes -> origin/axes
* [new branch] display-refactor -> origin/display-refactor
* [new branch] drag-and-drop -> origin/drag-and-drop
* [new branch] fix-duplicate-blobs -> origin/fix-duplicate-blobs
* [new branch] for-ignacio -> origin/for-ignacio
* [new branch] for-jerome -> origin/for-jerome
* [new branch] hack-units -> origin/hack-units
* [new branch] ij-legacy-fiji-compat -> origin/ij-legacy-fiji-compat
* [new branch] ij-macro -> origin/ij-macro
* [new branch] invalid-command-test -> origin/invalid-command-test
* [new branch] legacy-delusions -> origin/legacy-delusions
* [new branch] legacy-in-rebase -> origin/legacy-in-rebase
error: Ref refs/remotes/origin/master is at a0e38ddec6b6cbc826270ada8fcaa633b31c8975 but expected f742dab7c8043a17921ae2532cfe16c95866f533
! f742dab..71270ab master -> origin/master (unable to update local ref)
* [new branch] measure-engine -> origin/measure-engine
* [new branch] minimaven -> origin/minimaven
* [new branch] new-image -> origin/new-image
* [new branch] r-scripting -> origin/r-scripting
* [new branch] script-editor-minimal -> origin/script-editor-minimal
* [new branch] simplify-axis-events -> origin/simplify-axis-events
* [new branch] undo -> origin/undo
* [new branch] undo-ctr -> origin/undo-ctr
* [new branch] windows -> origin/windows
Fetching submodule modules/imglib
>From git://github.com/imagej/imglib
39ce99d..a549a2c HEAD -> origin/HEAD
* [new branch] axes -> origin/axes
646023a..615c351 barcelona-tobias -> origin/barcelona-tobias
9f38afc..5bf6580 catmaid -> origin/catmaid
+ 60128ad...a549a2c contrib -> origin/contrib (forced update)
* [new branch] fileimg -> origin/fileimg
c291dfb..e6a6dd7 gauss3 -> origin/gauss3
* [new branch] histogram-stuff -> origin/histogram-stuff
* [new branch] knip_algorithms -> origin/knip_algorithms
26d447a..e621c7a knip_deployment -> origin/knip_deployment
ffc39b1..30491f2 knip_io -> origin/knip_io
error: Ref refs/remotes/origin/master is at a549a2c790c76fd6a92b3e32d8620f19b99fac8e but expected 39ce99d96d39390a31641cb4ae00d17d9cd0c61e
! 39ce99d..58c6b1a master -> origin/master (unable to update local ref)
* [new branch] measure-engine -> origin/measure-engine
* [new branch] mpicbg-version -> origin/mpicbg-version
* [new branch] optimized-ops -> origin/optimized-ops
* [new branch] performance -> origin/performance
* [new branch] polygonroi-bug -> origin/polygonroi-bug
0c3b61a..faf78dd projectors -> origin/projectors
* [new branch] roi-experiments -> origin/roi-experiments
* [new branch] sandbox-sampling -> origin/sandbox-sampling
* [new branch] scalespace -> origin/scalespace
* [new branch] subinterval-cursor -> origin/subinterval-cursor
* [new branch] tobias-neighborhood-experiments -> origin/tobias-neighborhood-experiments
* [new branch] toy-file-backed-img -> origin/toy-file-backed-img
* [new branch] types-experiment -> origin/types-experiment
* [new branch] volatile -> origin/volatile
* [new tag] v2.0.0-beta2 -> v2.0.0-beta2
Fetching submodule modules/javassist
p11-kit: couldn't load module: /usr/lib/x86_64-linux-gnu/pkcs11/gnome-keyring-pkcs11.so: /usr/lib/x86_64-linux-gnu/pkcs11/gnome-keyring-pkcs11.so: cannot open shared object file: No such file or directory
>From http://fiji.sc/javassist/
* [new branch] svn/3_12_0_SP -> origin/svn/3_12_0_SP
* [new branch] svn/JBPAPP-9336 -> origin/svn/JBPAPP-9336
* [new branch] svn/rel_3_12_0_ga_JBPAPP-9257 -> origin/svn/rel_3_12_0_ga_JBPAPP-9257
* [new branch] svn/rel_3_12_0_sp -> origin/svn/rel_3_12_0_sp
3ad4da6..fba928e svn/trunk -> origin/svn/trunk
* [new tag] Javassist_2_5_1_0 -> Javassist_2_5_1_0
* [new tag] Javassist_2_5_1_1 -> Javassist_2_5_1_1
* [new tag] Javassist_2_6 -> Javassist_2_6
* [new tag] Javassist_3_2_0_CR2 -> Javassist_3_2_0_CR2
* [new tag] Javassist_3_2_final -> Javassist_3_2_final
* [new tag] Javassist_3_3_GA -> Javassist_3_3_GA
* [new tag] Javassist_3_5_0_GA -> Javassist_3_5_0_GA
* [new tag] Javassit_3_2_0_CR2 -> Javassit_3_2_0_CR2
* [new tag] bugfix988787 -> bugfix988787
* [new tag] javassist3_1_RC_10jan06 -> javassist3_1_RC_10jan06
* [new tag] javassist3_1_final -> javassist3_1_final
* [new tag] javassist_3_2_0_CR1 -> javassist_3_2_0_CR1
* [new tag] rel_2_5 -> rel_2_5
* [new tag] rel_2_7_beta2 -> rel_2_7_beta2
* [new tag] rel_2_7_beta_1 -> rel_2_7_beta_1
* [new tag] rel_3_0 -> rel_3_0
* [new tag] rel_3_0_beta -> rel_3_0_beta
* [new tag] rel_3_0_rc1 -> rel_3_0_rc1
* [new tag] rel_3_0_rc1_for_jbossaop -> rel_3_0_rc1_for_jbossaop
* [new tag] rel_3_10_0_ga -> rel_3_10_0_ga
* [new tag] rel_3_11_0_ga -> rel_3_11_0_ga
* [new tag] rel_3_12_0_ga -> rel_3_12_0_ga
* [new tag] rel_3_12_1_ga -> rel_3_12_1_ga
* [new tag] rel_3_13_0_ga -> rel_3_13_0_ga
* [new tag] rel_3_14_0_ga -> rel_3_14_0_ga
* [new tag] rel_3_15_0_ga -> rel_3_15_0_ga
* [new tag] rel_3_1_rc1 -> rel_3_1_rc1
* [new tag] rel_3_1_rc2 -> rel_3_1_rc2
* [new tag] rel_3_3_GA -> rel_3_3_GA
* [new tag] rel_3_4_GA -> rel_3_4_GA
* [new tag] rel_3_5_CR1 -> rel_3_5_CR1
* [new tag] rel_3_5_GA -> rel_3_5_GA
* [new tag] rel_3_6_beta -> rel_3_6_beta
* [new tag] rel_3_6_cr1 -> rel_3_6_cr1
* [new tag] rel_3_6_cr2 -> rel_3_6_cr2
* [new tag] rel_3_6_ga -> rel_3_6_ga
* [new tag] rel_3_7_1_ga -> rel_3_7_1_ga
* [new tag] rel_3_8_0_ga -> rel_3_8_0_ga
* [new tag] rel_3_8_1_ga -> rel_3_8_1_ga
* [new tag] rel_3_9_0_ga -> rel_3_9_0_ga
* [new tag] snapshot2003 -> snapshot2003
* [new tag] start -> start
* [new tag] without_pruning -> without_pruning
ERROR: Problem fetching from origin / origin - could be unavailable. Continuing anyway
[workspace] $ git tag -l master
[workspace] $ git rev-parse origin/master
Commencing build of Revision e7106ed9f34346e215859ea384162aaa662292b3 (origin/master)
GitAPI created
Checking out Revision e7106ed9f34346e215859ea384162aaa662292b3 (origin/master)
[workspace] $ git checkout -f e7106ed9f34346e215859ea384162aaa662292b3
[workspace] $ git submodule init
[workspace] $ git submodule sync
Fetching upstream changes from git://github.com/fiji/fiji
[workspace] $ git fetch -t git://github.com/fiji/fiji +refs/heads/*:refs/remotes/origin/*
[workspace] $ git ls-tree HEAD
[workspace] $ git submodule update
FATAL: Error performing git submodule update
hudson.plugins.git.GitException: Error performing git submodule update
at hudson.plugins.git.GitAPI.launchCommandIn(GitAPI.java:330)
at hudson.plugins.git.GitAPI.launchCommand(GitAPI.java:295)
at hudson.plugins.git.GitAPI.launchCommand(GitAPI.java:305)
at hudson.plugins.git.GitAPI.submoduleUpdate(GitAPI.java:276)
at hudson.plugins.git.GitSCM$4.invoke(GitSCM.java:742)
at hudson.plugins.git.GitSCM$4.invoke(GitSCM.java:707)
at hudson.FilePath.act(FilePath.java:758)
at hudson.FilePath.act(FilePath.java:740)
at hudson.plugins.git.GitSCM.checkout(GitSCM.java:707)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1193)
at hudson.model.AbstractBuild$AbstractRunner.checkout(AbstractBuild.java:565)
at hudson.model.AbstractBuild$AbstractRunner.run(AbstractBuild.java:453)
at hudson.model.Run.run(Run.java:1376)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:175)
Caused by: hudson.plugins.git.GitException: Command returned status code 1: fatal: reference is not a tree: 740c72e2e4ca40f0a2041933c25a453930039ac3
Submodule path 'modules/ij-plugins': checked out '737d659c72357b94b8aaee3ae21e209402ebe7c8'
>From git://github.com/imagej/imagej
a0e38dd..71270ab master -> origin/master
Submodule path 'modules/imagej2': checked out 'fffbc2008553f6883ec1d715cd26da4a597445ec'
Submodule path 'modules/imglib': checked out '58c6b1a0104a44d1c4d73d413b688e2a2476c686'
Unable to checkout '740c72e2e4ca40f0a2041933c25a453930039ac3' in submodule path 'modules/ImageJA'
at hudson.plugins.git.GitAPI.launchCommandIn(GitAPI.java:325)
... 15 more
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