[ImageJ-builds] Build failed in Jenkins: fiji-windows-full #349
Jenkins Daemon
jenkins at qa.nest-initiative.org
Mon Apr 1 12:26:28 CDT 2013
See <https://qa.nest-initiative.org/job/fiji-windows-full/349/changes>
Changes:
[Johannes Schindelin] Build checked-out modules by default again
------------------------------------------
[...truncated 457 lines...]
+ eval sh /c/jenkins/workspace/fiji-windows-full/bin/ImageJ.sh --mini-maven '-Dimagej.app.directory="/c/jenkins/workspace/fiji-windows-full" -Dminimaven.updateinterval=1' -DartifactId=-- install
++ sh /c/jenkins/workspace/fiji-windows-full/bin/ImageJ.sh --mini-maven -Dimagej.app.directory=/c/jenkins/workspace/fiji-windows-full -Dminimaven.updateinterval=1 -DartifactId=-- install
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\ImageJA's parent: sc.fiji != com.github.scijava
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\ImageJA's parent: pom-fiji-submodules != pom-scijava
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\ImageJA's parent: 2.0.0-SNAPSHOT != 1.4
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\TrakEM2's parent: sc.fiji != org.scijava
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\TrakEM2's parent: pom-fiji-submodules != pom-scijava
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\TrakEM2's parent: 2.0.0-SNAPSHOT != 1.24
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\clojure's parent: sc.fiji != org.sonatype.oss
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\clojure's parent: pom-fiji-submodules != oss-parent
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\clojure's parent: 2.0.0-SNAPSHOT != 5
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\commons-math's parent: sc.fiji != org.apache.commons
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\commons-math's parent: pom-fiji-submodules != commons-parent
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\commons-math's parent: 2.0.0-SNAPSHOT != 20
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\imagej2's parent: sc.fiji != org.scijava
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\imagej2's parent: pom-fiji-submodules != pom-scijava
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\imagej2's parent: 2.0.0-SNAPSHOT != 1.16
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\imglib's parent: sc.fiji != org.scijava
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\imglib's parent: pom-fiji-submodules != pom-scijava
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\imglib's parent: 2.0.0-SNAPSHOT != 1.13
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\mpicbg's parent: sc.fiji != org.scijava
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\mpicbg's parent: pom-fiji-submodules != pom-scijava
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\mpicbg's parent: 2.0.0-SNAPSHOT != 1.17
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\scijava-common's parent: sc.fiji != org.scijava
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\scijava-common's parent: pom-fiji-submodules != pom-scijava
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\scijava-common's parent: 2.0.0-SNAPSHOT != 1.28
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Compiling 312 files in C:\jenkins\workspace\fiji-windows-full\modules\ImageJA
C:\jenkins\workspace\fiji-windows-full\modules\ImageJA\src\main\java\MacClipboard.java:108: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class for a varargs call
cast to java.lang.Class[] for a non-varargs call and to suppress this warning
Method m = c.getMethod("isInitialized", null);
^
C:\jenkins\workspace\fiji-windows-full\modules\ImageJA\src\main\java\MacClipboard.java:109: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
Boolean b= (Boolean)m.invoke(null, null);
^
C:\jenkins\workspace\fiji-windows-full\modules\ImageJA\src\main\java\MacClipboard.java:111: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class for a varargs call
cast to java.lang.Class[] for a non-varargs call and to suppress this warning
m= c.getMethod("open", null);
^
C:\jenkins\workspace\fiji-windows-full\modules\ImageJA\src\main\java\MacClipboard.java:112: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
m.invoke(null, null);
^
C:\jenkins\workspace\fiji-windows-full\modules\ImageJA\src\main\java\MacClipboard.java:127: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class for a varargs call
cast to java.lang.Class[] for a non-varargs call and to suppress this warning
m = c.getMethod("getNaturalBounds", null);
^
C:\jenkins\workspace\fiji-windows-full\modules\ImageJA\src\main\java\MacClipboard.java:128: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
Object rect= m.invoke(importer, null);
^
C:\jenkins\workspace\fiji-windows-full\modules\ImageJA\src\main\java\MacClipboard.java:132: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class<?> for a varargs call
cast to java.lang.Class<?>[] for a non-varargs call and to suppress this warning
m = rect.getClass().getMethod("getWidth", null);
^
C:\jenkins\workspace\fiji-windows-full\modules\ImageJA\src\main\java\MacClipboard.java:133: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
Integer width= (Integer)m.invoke(rect, null);
^
C:\jenkins\workspace\fiji-windows-full\modules\ImageJA\src\main\java\MacClipboard.java:134: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Class<?> for a varargs call
cast to java.lang.Class<?>[] for a non-varargs call and to suppress this warning
m = rect.getClass().getMethod("getHeight", null);
^
C:\jenkins\workspace\fiji-windows-full\modules\ImageJA\src\main\java\MacClipboard.java:135: warning: non-varargs call of varargs method with inexact argument type for last parameter;
cast to java.lang.Object for a varargs call
cast to java.lang.Object[] for a non-varargs call and to suppress this warning
Integer height= (Integer)m.invoke(rect, null);
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
10 warnings
Compiling 26 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\fiji-lib
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\fiji-lib\src\main\java\fiji\util\gui\JFrameCommandFinder.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 22 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\pal-optimization
Compiling 190 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\VIB-lib
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 251 files in C:\jenkins\workspace\fiji-windows-full\modules\imglib\imglib1\core
Compiling 121 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\3D_Viewer
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 35 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\level_sets
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 1 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\3D_Blob_Segmentation
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\3D_Blob_Segmentation\src\main\java\ij3d\segmentation\Blob_Segmentation_in_3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\3D_Blob_Segmentation\src\main\java\ij3d\segmentation\Blob_Segmentation_in_3D.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 4 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\3D_Objects_Counter
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\3D_Objects_Counter\src\main\java\Utilities\Counter3D.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 121 files in C:\jenkins\workspace\fiji-windows-full\modules\mpicbg\mpicbg
Note: C:\jenkins\workspace\fiji-windows-full\modules\mpicbg\mpicbg\src\main\java\mpicbg\ij\InteractiveInvertibleCoordinateTransform.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 87 files in C:\jenkins\workspace\fiji-windows-full\modules\imglib\imglib1\algorithms
Compiling 21 files in C:\jenkins\workspace\fiji-windows-full\modules\imglib\imglib1\ij
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 3 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Algorithm_Launcher
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\Algorithm_Launcher\src\main\java\AlgorithmInfo.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 6 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\AnalyzeSkeleton_
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\AnalyzeSkeleton_\src\main\java\skeleton_analysis\AnalyzeSkeleton_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Analyze_Reader_Writer
Compiling 1 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Anisotropic_Diffusion_2D
Compiling 3 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Arrow_
Compiling 2 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Auto_Threshold
Compiling 8 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\BalloonSegmentation_
Note: C:\jenkins\workspace\fiji-windows-full\src-plugins\BalloonSegmentation_\src\main\java\BalloonSegmentation_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Warning: <https://qa.nest-initiative.org/job/fiji-windows-full/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools
Warning: <https://qa.nest-initiative.org/job/fiji-windows-full/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools
Compiling 211 files in C:\jenkins\workspace\fiji-windows-full\modules\javassist
Compiling 26 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\fiji-compat
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 3 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\fiji-scripting
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\BeanShell_Interpreter
Compiling 218 files in C:\jenkins\workspace\fiji-windows-full\modules\imagej2\core\core
Note: imagej.event.DefaultEventService indexed under imagej.service.Service
Note: imagej.event.DefaultStatusService indexed under imagej.service.Service
Note: imagej.ext.display.DefaultDisplayService indexed under imagej.service.Service
Note: imagej.ext.menu.DefaultMenuService indexed under imagej.service.Service
Note: imagej.ext.module.DefaultModuleService indexed under imagej.service.Service
Note: imagej.ext.plugin.DefaultPluginService indexed under imagej.service.Service
Note: imagej.ext.tool.DefaultToolService indexed under imagej.service.Service
Note: imagej.log.DefaultLogService indexed under imagej.service.Service
Note: imagej.object.DefaultObjectService indexed under imagej.service.Service
Note: imagej.options.DefaultOptionsService indexed under imagej.service.Service
Note: imagej.thread.DefaultThreadService indexed under imagej.service.Service
Note: imagej.ext.display.ActiveDisplayPreprocessor indexed under imagej.ext.plugin.Plugin
Note: imagej.ext.display.DefaultDisplay indexed under imagej.ext.plugin.Plugin
Note: imagej.ext.display.DefaultTextDisplay indexed under imagej.ext.plugin.Plugin
Note: imagej.ext.display.DisplayPostprocessor indexed under imagej.ext.plugin.Plugin
Note: imagej.ext.plugin.debug.DebugPostprocessor indexed under imagej.ext.plugin.Plugin
Note: imagej.ext.plugin.debug.DebugPreprocessor indexed under imagej.ext.plugin.Plugin
Note: imagej.ext.plugin.InitPreprocessor indexed under imagej.ext.plugin.Plugin
Note: imagej.ext.plugin.ServicePreprocessor indexed under imagej.ext.plugin.Plugin
Note: imagej.ext.plugin.ValidityPreprocessor indexed under imagej.ext.plugin.Plugin
Note: imagej.ext.script.ScriptEngineList indexed under imagej.ext.plugin.Plugin
Note: imagej.ext.script.ScriptPlugin indexed under imagej.ext.plugin.Plugin
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 37 files in C:\jenkins\workspace\fiji-windows-full\modules\imagej2\core\updater\core
Note: imagej.updater.core.FileUploader indexed under imagej.updater.core.Uploader
Note: imagej.updater.ui.UpdatesAvailable indexed under imagej.ext.plugin.Plugin
Compiling 13 files in C:\jenkins\workspace\fiji-windows-full\modules\imagej2\ui\swing\updater
Note: imagej.updater.gui.ImageJUpdater indexed under imagej.ext.plugin.Plugin
Compiling 3 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Bug_Submitter
C:\jenkins\workspace\fiji-windows-full\src-plugins\Bug_Submitter\src\main\java\Bug_Submitter\Bug_Submitter.java:374: cannot find symbol
symbol : method getInstalledVersions(java.io.File,imagej.updater.util.Progress)
location: class imagej.updater.core.FilesCollection
FilesCollection.getInstalledVersions(new File(System.getProperty("ij.dir")), progress);
^
1 error
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:84)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
at imagej.build.MiniMaven.main(MiniMaven.java:133)
+ for name in '"$@"'
+ case "$name" in
+ artifactId=verbose=true
+ artifactId=verbose=true
+ artifactId=verbose=true
+ case "$name" in
+ eval sh /c/jenkins/workspace/fiji-windows-full/bin/ImageJ.sh --mini-maven '-Dimagej.app.directory="/c/jenkins/workspace/fiji-windows-full" -Dminimaven.updateinterval=1' -DartifactId=verbose=true install
++ sh /c/jenkins/workspace/fiji-windows-full/bin/ImageJ.sh --mini-maven -Dimagej.app.directory=/c/jenkins/workspace/fiji-windows-full -Dminimaven.updateinterval=1 -DartifactId=verbose=true install
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\ImageJA's parent: sc.fiji != com.github.scijava
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\ImageJA's parent: pom-fiji-submodules != pom-scijava
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\ImageJA's parent: 2.0.0-SNAPSHOT != 1.4
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\TrakEM2's parent: sc.fiji != org.scijava
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\TrakEM2's parent: pom-fiji-submodules != pom-scijava
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\TrakEM2's parent: 2.0.0-SNAPSHOT != 1.24
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\clojure's parent: sc.fiji != org.sonatype.oss
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\clojure's parent: pom-fiji-submodules != oss-parent
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\clojure's parent: 2.0.0-SNAPSHOT != 5
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\commons-math's parent: sc.fiji != org.apache.commons
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\commons-math's parent: pom-fiji-submodules != commons-parent
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\commons-math's parent: 2.0.0-SNAPSHOT != 20
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\imagej2's parent: sc.fiji != org.scijava
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\imagej2's parent: pom-fiji-submodules != pom-scijava
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\imagej2's parent: 2.0.0-SNAPSHOT != 1.16
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\imglib's parent: sc.fiji != org.scijava
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\imglib's parent: pom-fiji-submodules != pom-scijava
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\imglib's parent: 2.0.0-SNAPSHOT != 1.13
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\mpicbg's parent: sc.fiji != org.scijava
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\mpicbg's parent: pom-fiji-submodules != pom-scijava
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\mpicbg's parent: 2.0.0-SNAPSHOT != 1.17
Warning: groupId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\scijava-common's parent: sc.fiji != org.scijava
Warning: artifactId mismatch in C:\jenkins\workspace\fiji-windows-full\modules\scijava-common's parent: pom-fiji-submodules != pom-scijava
Warning: version mismatch in C:\jenkins\workspace\fiji-windows-full\modules\scijava-common's parent: 2.0.0-SNAPSHOT != 1.28
Looking at children of pom-fiji
Looking at children of pom-fiji-plugins
Warning: <https://qa.nest-initiative.org/job/fiji-windows-full/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools
Warning: <https://qa.nest-initiative.org/job/fiji-windows-full/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools
Compiling 3 files in C:\jenkins\workspace\fiji-windows-full\src-plugins\Bug_Submitter
C:\jenkins\workspace\fiji-windows-full\src-plugins\Bug_Submitter\src\main\java\Bug_Submitter\Bug_Submitter.java:374: cannot find symbol
symbol : method getInstalledVersions(java.io.File,imagej.updater.util.Progress)
location: class imagej.updater.core.FilesCollection
FilesCollection.getInstalledVersions(new File(System.getProperty("ij.dir")), progress);
^
1 error
Exception in thread "main" imagej.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at imagej.build.minimaven.JavaCompiler.call(JavaCompiler.java:84)
at imagej.build.minimaven.MavenProject.build(MavenProject.java:443)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:331)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:326)
at imagej.build.minimaven.MavenProject.buildAndInstall(MavenProject.java:288)
at imagej.build.MiniMaven.main(MiniMaven.java:133)
Build step 'Execute shell' marked build as failure
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