[ImageJ-builds] Build failed in Jenkins: Fiji-minimal #984
jenkins at imagej.net
jenkins at imagej.net
Tue Oct 9 14:06:22 CDT 2012
See <http://jenkins.imagej.net/job/Fiji-minimal/984/>
------------------------------------------
Started by remote host 127.0.0.1
Building on master
[workspace] $ /bin/sh -xe /tmp/hudson212709135572264302.sh
+ test -d fiji
+ cd fiji
+ git pull -k
>From git://github.com/fiji/fiji
34bf3b5..6ff5823 track-mate -> origin/track-mate
Already up-to-date.
+ git clean -x -d -f
Removing ImageJ
Removing ImageJ-linux64
Removing fiji
Removing fiji-linux64
Removing jars/Jama-1.0.2.jar
Removing jars/VIB-lib-2.0.0-SNAPSHOT.jar
Removing jars/bsh-2.0b4.jar
Removing jars/clojure-1.3.0.jar
Removing jars/fake-2.0.0-SNAPSHOT.jar
Removing jars/fiji-compat-2.0.0-SNAPSHOT.jar
Removing jars/fiji-lib-2.0.0-SNAPSHOT.jar
Removing jars/fiji-scripting-2.0.0-SNAPSHOT.jar
Removing jars/ij-1.47d.jar
Removing jars/ij-launcher-2.0.0-SNAPSHOT.jar
Removing jars/imglib-2.0.0-SNAPSHOT.jar
Removing jars/imglib-algorithms-2.0.0-SNAPSHOT.jar
Removing jars/imglib-ij-2.0.0-SNAPSHOT.jar
Removing jars/imglib2-2.0.0-SNAPSHOT.jar
Removing jars/imglib2-algorithms-2.0.0-SNAPSHOT.jar
Removing jars/imglib2-ij-2.0.0-SNAPSHOT.jar
Removing jars/itextpdf-5.1.1.jar
Removing jars/j3d-core-1.5.2.jar
Removing jars/j3d-core-utils-1.5.2.jar
Removing jars/jama-1.0.2.jar
Removing jars/javac-2.0.0-SNAPSHOT.jar
Removing jars/javassist-3.14.0-GA.jar
Removing jars/jna-3.2.7.jar
Removing jars/js-1.7R2.jar
Removing jars/jsch-0.1.42.jar
Removing jars/junit-4.8.1.jar
Removing jars/jython-2.5.2.jar
Removing jars/jzlib-1.0.7.jar
Removing jars/mines-jtk-20100113.jar
Removing jars/mpicbg-20111128.jar
Removing jars/pal-optimization-2.0.0-SNAPSHOT.jar
Removing jars/vecmath-1.5.2.jar
Removing plugins/3D_Blob_Segmentation-2.0.0-SNAPSHOT.jar
Removing plugins/3D_Objects_Counter-2.0.0-SNAPSHOT.jar
Removing plugins/3D_Viewer-2.0.0-SNAPSHOT.jar
Removing plugins/Action_Bar-2.0.0-SNAPSHOT.jar
Removing plugins/Algorithm_Launcher-2.0.0-SNAPSHOT.jar
Removing plugins/AnalyzeSkeleton_-2.0.0-SNAPSHOT.jar
Removing plugins/Analyze_Reader_Writer-2.0.0-SNAPSHOT.jar
Removing plugins/Anisotropic_Diffusion_2D-2.0.0-SNAPSHOT.jar
Removing plugins/Arrow_-2.0.0-SNAPSHOT.jar
Removing plugins/Auto_Threshold-1.14.jar
Removing plugins/BalloonSegmentation_-2.0.0-SNAPSHOT.jar
Removing plugins/BeanShell_Interpreter-2.0.0-SNAPSHOT.jar
Removing plugins/Bug_Submitter-2.0.0-SNAPSHOT.jar
Removing plugins/CLI_-2.0.0-SNAPSHOT.jar
Removing plugins/CPU_Meter-2.0.0-SNAPSHOT.jar
Removing plugins/Calculator_Plus-2.0.0-SNAPSHOT.jar
Removing plugins/Clojure_Interpreter-2.0.0-SNAPSHOT.jar
Removing plugins/Colocalisation_Analysis-2.0.0-SNAPSHOT.jar
Removing plugins/Color_Histogram-2.0.5.jar
Removing plugins/Color_Inspector_3D-2.3.jar
Removing plugins/Colour_Deconvolution-2.0.0-SNAPSHOT.jar
Removing plugins/CorrectBleach_-2.0.0-SNAPSHOT.jar
Removing plugins/Fiji_Updater.jar
Removing plugins/level_sets-1.0.jar
Removing src-plugins/3D_Blob_Segmentation/target/
Removing src-plugins/3D_Objects_Counter/target/
Removing src-plugins/3D_Viewer/target/
Removing src-plugins/Action_Bar/target/
Removing src-plugins/Algorithm_Launcher/target/
Removing src-plugins/AnalyzeSkeleton_/target/
Removing src-plugins/Analyze_Reader_Writer/target/
Removing src-plugins/Anisotropic_Diffusion_2D/target/
Removing src-plugins/Arrow_/target/
Removing src-plugins/Auto_Threshold/target/
Removing src-plugins/BalloonSegmentation_/target/
Removing src-plugins/BeanShell_Interpreter/target/
Removing src-plugins/Bug_Submitter/target/
Removing src-plugins/CLI_/target/
Removing src-plugins/CPU_Meter/target/
Removing src-plugins/Calculator_Plus/target/
Removing src-plugins/Clojure_Interpreter/target/
Removing src-plugins/Colocalisation_Analysis/target/
Removing src-plugins/Color_Histogram/target/
Removing src-plugins/Color_Inspector_3D/target/
Removing src-plugins/Colour_Deconvolution/target/
Removing src-plugins/CorrectBleach_/target/
Removing src-plugins/Fiji_Updater/target/
Removing src-plugins/Jama/target/
Removing src-plugins/VIB-lib/target/
Removing src-plugins/fake/target/
Removing src-plugins/fiji-compat/target/
Removing src-plugins/fiji-lib/target/
Removing src-plugins/fiji-scripting/target/
Removing src-plugins/javac/target/
Removing src-plugins/level_sets/target/
Removing src-plugins/pal-optimization/target/
+ cd fiji
+ sh -x ./Build.sh -Dminimaven.updateinterval=1 --
+ set -a
+ dirname ./Build.sh
+ CWD=.
+ sed -n s/^.<version>\(.*\)<\/version>.*/\1/p
+ VERSION=2.0.0-SNAPSHOT
+ FAKE_JAR=jars/fake-2.0.0-SNAPSHOT.jar
+ PATHSEP=:
+ uname -s
+ UNAME_S=Linux
+ uname -m
+ platform=linux64
+ java_submodule=linux-amd64
+ look_for_tools_jar /usr/lib64/jvm /usr/lib/jvm
+ test -d /usr/lib64/jvm
+ continue
+ test -d /usr/lib/jvm
+ test -f /usr/lib/jvm/java/lib/tools.jar
+ continue
+ test -f /usr/lib/jvm/default-java/lib/tools.jar
+ export TOOLS_JAR=/usr/lib/jvm/default-java/lib/tools.jar
+ return
+ exe=
+ test -n linux64
+ test -z
+ get_java_home
+ test -d
+ test -n linux-amd64
+ test -d ./java/linux-amd64
+ + head -n 1
ls -t ./java/linux-amd64
+ echo ./java/linux-amd64/jdk1.6.0_24/jre
+ JAVA_HOME=./java/linux-amd64/jdk1.6.0_24/jre
+ test -z linux64
+ test -f ./java/linux-amd64/jdk1.6.0_24/jre/lib/tools.jar
+ test -f ./java/linux-amd64/jdk1.6.0_24/jre/../lib/tools.jar
+ test -n ./java/linux-amd64/jdk1.6.0_24/jre
+ test -d ./java/linux-amd64/jdk1.6.0_24/jre
+ test -d ./java/linux-amd64/jdk1.6.0_24/jre
+ test -d ./java/linux-amd64/jdk1.6.0_24/jre/jre
+ export PATH=./java/linux-amd64/jdk1.6.0_24/jre/bin:/usr/local/sbin:/usr/local/bin:/usr/bin:/usr/sbin:/sbin:/bin
+ : build fake.jar, making sure javac is in the PATH
+ get_java_home
+ test -d ./java/linux-amd64/jdk1.6.0_24/jre
+ echo ./java/linux-amd64/jdk1.6.0_24/jre
+ get_java_home
+ test -d ./java/linux-amd64/jdk1.6.0_24/jre
+ echo ./java/linux-amd64/jdk1.6.0_24/jre
+ PATH=./java/linux-amd64/jdk1.6.0_24/jre/bin:/usr/local/sbin:/usr/local/bin:/usr/bin:/usr/sbin:/sbin:/bin:./java/linux-amd64/jdk1.6.0_24/jre/bin:./java/linux-amd64/jdk1.6.0_24/jre/../bin ensure_fake_is_built
+ need_to_build_fake
+ cd .
+ test -f jars/fake-2.0.0-SNAPSHOT.jar
+ echo YesPlease
+ return
+ return
+ test -z YesPlease
+ cd .
+ : blow previous builds away
+ rm -f jars/fake.jar
+ rm -rf src-plugins/fake/target/classes
+ mkdir -p src-plugins/fake/target/classes
+ : compile classes
+ find src-plugins/fake/ -name *.java
+ java -jar precompiled/javac.jar -source 1.5 -target 1.5 -classpath precompiled/javac.jar -d src-plugins/fake/target/classes src-plugins/fake/src/main/java/fiji/build/CompileCProgram.java src-plugins/fake/src/main/java/fiji/build/StreamDumper.java src-plugins/fake/src/main/java/fiji/build/SubFake.java src-plugins/fake/src/main/java/fiji/build/Special.java src-plugins/fake/src/main/java/fiji/build/MultiIterable.java src-plugins/fake/src/main/java/fiji/build/CompileClass.java src-plugins/fake/src/main/java/fiji/build/Fake.java src-plugins/fake/src/main/java/fiji/build/CompileNativeLibrary.java src-plugins/fake/src/main/java/fiji/build/ExecuteProgram.java src-plugins/fake/src/main/java/fiji/build/ByteCodeAnalyzer.java src-plugins/fake/src/main/java/fiji/build/Rule.java src-plugins/fake/src/main/java/fiji/build/MiniMaven.java src-plugins/fake/src/main/java/fiji/build/FakeException.java src-plugins/fake/src/main/java/fiji/build/GlobFilter.java src-plugins/fake/src/main/java/fiji/build/Util.java src-plugins/fake/src/main/java/fiji/build/ObsoleteClassFiles.java src-plugins/fake/src/main/java/fiji/build/Parser.java src-plugins/fake/src/main/java/fiji/build/minimaven/ReadInto.java src-plugins/fake/src/main/java/fiji/build/minimaven/BuildEnvironment.java src-plugins/fake/src/main/java/fiji/build/minimaven/POM.java src-plugins/fake/src/main/java/fiji/build/minimaven/Coordinate.java src-plugins/fake/src/main/java/fiji/build/minimaven/VersionPOMHandler.java src-plugins/fake/src/main/java/fiji/build/minimaven/SnapshotPOMHandler.java src-plugins/fake/src/main/java/fiji/build/minimaven/JavaCompiler.java src-plugins/fake/src/main/java/fiji/build/minimaven/JarClassLoader.java src-plugins/fake/src/main/java/fiji/build/All.java src-plugins/fake/src/main/java/fiji/build/ParallelMaker.java src-plugins/fake/src/main/java/fiji/build/CopyJar.java src-plugins/fake/src/main/java/fiji/build/CompileJar.java
+ : compile .jar using MiniMaven
+ cd src-plugins
+ java -Dij.dir=.. -classpath fake/target/classes:../precompiled/javac.jar -DartifactId=fake fiji.build.MiniMaven jar
Compiling 29 files in /data/devel/jenkins/jobs/Fiji-minimal/workspace/fiji/src-plugins/fake
+ cp fake/target/fake-2.0.0-SNAPSHOT.jar ../jars/
+ sh ./bin/ImageJ.sh --build -Dminimaven.updateinterval=1 --
Building plugins/Fiji_Updater.jar <- /data/devel/jenkins/jobs/Fiji...
[Fatal Error] :1:1: Premature end of file.
org.xml.sax.SAXParseException: Premature end of file.
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1231)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:522)
at fiji.build.minimaven.VersionPOMHandler.parse(VersionPOMHandler.java:45)
at fiji.build.minimaven.VersionPOMHandler.parse(VersionPOMHandler.java:38)
at fiji.build.minimaven.POM.findPOM(POM.java:592)
at fiji.build.minimaven.POM.getDependencies(POM.java:434)
at fiji.build.minimaven.POM.getDependencies(POM.java:422)
at fiji.build.minimaven.POM.upToDate(POM.java:116)
at fiji.build.SubFake.buildPOM(SubFake.java:267)
at fiji.build.SubFake.action(SubFake.java:223)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:245)
at fiji.build.Fake.main(Fake.java:60)
Premature end of file.
in rule plugins/Fiji_Updater.jar <- /data/devel/jenkins/jobs/Fiji...
in rule ImageJ <- plugins/Fiji_Updater.jar jars/ij.jar jars/jsch.jar
in rule fiji <- ImageJ
in rule all <- ImageJ fiji pom-fiji-plugins
Build step 'Execute shell' marked build as failure
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